RchiOBHm_Chr4g0412841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Reverse (-)
36811429 .. 36811698
270 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38346

Sequence Viewer

Length: 270 bp
ATGAAACTAAGCATCACTAGTAATACTTTTCGGTGCCAACATAGTGGGAAAGTTGATCTTAGTGGATTATGGCTCCGTGTGAGCATTATCTTTCGGGTATGTCGCCAAAATTGTAAAGCAAATGTTGCACTCTTTGCTAAATGGTGCTTGTTAGAGTACGTAGGTTATGTCGAGACTCTTGATATTATTTCTGGAGGTTCTTGCACTATGGGCTTTAGGCACAATGTTCCCTCCTTGTATTCTACAGTTTCATTAATAGTAACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.95

Weight (kDa)

9.19

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 33
AfaI GTAC 1 cut(s) 158
AhlI ACTAGT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 167
AseI ATTAAT 1 cut(s) 254
BanI GGYRCC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 167
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 35, 74
BmsI GCATC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 35, 74
BspT107I GGYRCC 1 cut(s) 33
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 2 cut(s) 247, 265
BstAPI GCANNNNNTGC 2 cut(s) 125, 134
BstBAI YACGTR 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 8, 59
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 125, 134, 210
BstSFI CTRYAG 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 44
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 2 cut(s) 73, 213
CviKI_1 RGCY 2 cut(s) 73, 213
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 8, 59
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 160
FaiI YATR 5 cut(s) 42, 70, 100, 168, 209
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FspBI CTAG 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 213
HinfI GANTC 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 172, 179, 192
HpyCH4III ACNGT 2 cut(s) 247, 265
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 128, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 134, 210
HpyF3I CTNAG 2 cut(s) 8, 59
HpySE526I ACGT 1 cut(s) 159
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 1 cut(s) 177
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 2 cut(s) 188, 241
MseI TTAA 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 125, 134, 210
NdeII GATC 1 cut(s) 55
NlaIV GGNNCC 2 cut(s) 35, 74
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 35, 74
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 169
SetI ASST 3 cut(s) 162, 166, 199
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 243
SgeI CNNG 9 cut(s) 30, 89, 107, 160, 184, 191, 204, 213, 247
SnaBI TACGTA 1 cut(s) 160
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 247, 265
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 109
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 17, 240
TspGWI ACGGA 1 cut(s) 65
VspI ATTAAT 1 cut(s) 254
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.