Rorug02G0073300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000267
Physical Location & Seq
Reverse (-)
5857713 .. 5860100
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0073300.1

Sequence Viewer

Length: 921 bp
ATGGCGAAAGTGAGGCCAATTCAAGTTTGGATATTTACAGTGGTGGTGATCTCGGCATTGGTATCGATCTCCGAGTGTGCGAAGAAGCCAGTGACTGTGGCGAGGAAGGAAGACATTCCTTTCATCAAATGCCAGGTCTGTGAGAAGCTCGCAGCTCAGTTGCACCACCAAGTTGAGAAGAAGAGAGCTGAGGTCGAACCCAAGAAGATCTCGGAGTATCAGATTATTGAGATTACGGAGAATGTTTGTAATCTGAAGAAGGCGGAGGCGGATTGGATTTTGCTGATTGACATAGTTGAACAAGGAGATAAGTTGCAGCTGGTGGAACAAGAATCTGAAGGACAATGCAATTCCGAATGCAAGACGATCGAGCGAGCCTGTCAGGAGGTTCTGGGGTATTCTGATACTGATGTCGCTGAATATCTATACAAATCCAAACCTGACATTGATTCCTTGGTTAATTATCTATGCAAAGACCTTACTACAGCATGCAGTGCCAAGCCTCCCCCAGTTCCTAAGGGTAGGACTCCTGGAGAAGTTTTTGTGCCCAAGTCATCAAAAGAGGCTGAAATGGAAAAAATATTGAAATCTATGGAGGGTATGCCAGGAGCCCCAGGCATGAAAATGTACTCGAGAGATGATTTAATGAACATGAAAAACTTTGGCGGCGAAGATGGTGATGACGAAGATGATGATGACGAAGACGACACTCAATTTTCCTCAAAATTGGGAAGGGCTTTGAGAGACAAAGAAAATACAAAGAGTGATTTGAAACAGAAGATCACCCATGGAATTATAAAGACCAAGGACACACTAAAGAAGCATGCAAACAAGGTCTCTAACTGGTTACGGCAAAGGTGGAGGGGACTCAAAAAGACAGCTTCAAAGAAGAGTACAAAGGCCGGCAAGGCAGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

34.45

Weight (kDa)

7.48

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 797
AciI CCGC 3 cut(s) 263, 269, 666
AcuI CTGAAG 2 cut(s) 275, 357
AfaI GTAC 2 cut(s) 629, 895
AgsI TTSAA 5 cut(s) 23, 299, 586, 772, 885
AjnI CCWGG 4 cut(s) 132, 529, 604, 613
AluBI AGCT 6 cut(s) 148, 155, 188, 319, 881, 916
AluI AGCT 6 cut(s) 148, 155, 188, 319, 881, 916
Alw26I GTCTC 2 cut(s) 738, 841
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 631
AoxI GGCC 2 cut(s) 14, 900
ApeKI GCWGC 2 cut(s) 152, 316
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 58, 689, 775
AvaI CYCGRG 1 cut(s) 631
AxyI CCTNAGG 1 cut(s) 516
BaeGI GKGCMC 1 cut(s) 549
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 117, 708
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 164, 328
BccI CCATC 1 cut(s) 668
BceAI ACGGC 1 cut(s) 866
BcgI CGANNNNNNTGC 4 cut(s) 45, 79, 349, 383
BciT130I CCWGG 4 cut(s) 134, 531, 606, 615
BcoDI GTCTC 2 cut(s) 738, 841
BfmI CTRYAG 1 cut(s) 483
BglI GCCNNNNNGGC 1 cut(s) 908
BglII AGATCT 1 cut(s) 207
BisI GCNGC 3 cut(s) 153, 317, 667
BlsI GCNGC 3 cut(s) 154, 318, 668
Bme1390I CCNGG 4 cut(s) 134, 531, 606, 615
BmeT110I CYCGRG 1 cut(s) 631
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 4 cut(s) 134, 531, 606, 615
BmrI ACTGGG 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 503
BpiI GAAGAC 2 cut(s) 117, 708
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 841
BsaJI CCNNGG 4 cut(s) 453, 613, 787, 804
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 3 cut(s) 89, 509, 848
Bse21I CCTNAGG 1 cut(s) 516
BseBI CCWGG 4 cut(s) 134, 531, 606, 615
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 4 cut(s) 453, 613, 787, 804
BseMII CTCAG 2 cut(s) 170, 180
BseNI ACTGG 3 cut(s) 89, 509, 848
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 2 cut(s) 164, 328
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 16, 902
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 631
BsiSI CCGG 1 cut(s) 903
BslFI GGGAC 1 cut(s) 879
BsmAI GTCTC 2 cut(s) 738, 841
BsmFI GGGAC 1 cut(s) 879
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 2 cut(s) 16, 902
Bso31I GGTCTC 1 cut(s) 841
BsoBI CYCGRG 1 cut(s) 631
Bsp1286I GDGCHC 2 cut(s) 549, 613
Bsp143I GATC 5 cut(s) 48, 66, 207, 366, 780
Bsp19I CCATGG 1 cut(s) 787
BspACI CCGC 3 cut(s) 263, 269, 666
BspANI GGCC 2 cut(s) 16, 902
BspCNI CTCAG 2 cut(s) 169, 181
BspDI ATCGAT 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 841
BsrFI RCCGGY 1 cut(s) 902
BsrI ACTGG 3 cut(s) 89, 509, 848
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 4 cut(s) 453, 613, 787, 804
BssMI GATC 5 cut(s) 48, 66, 207, 366, 780
BssT1I CCWWGG 3 cut(s) 453, 787, 804
Bst2UI CCWGG 4 cut(s) 134, 531, 606, 615
Bst4CI ACNGT 2 cut(s) 40, 97
Bst6I CTCTTC 2 cut(s) 176, 884
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 5 cut(s) 150, 375, 490, 825, 904
BstDEI CTNAG 3 cut(s) 156, 189, 516
BstDSI CCRYGG 1 cut(s) 787
BstKTI GATC 5 cut(s) 51, 69, 210, 369, 783
BstMAI GTCTC 2 cut(s) 738, 841
BstMBI GATC 5 cut(s) 48, 66, 207, 366, 780
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 2 cut(s) 494, 908
BstNI CCWGG 4 cut(s) 134, 531, 606, 615
BstNSI RCATGY 2 cut(s) 492, 827
BstSCI CCNGG 4 cut(s) 132, 529, 604, 613
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 164, 328
BstV2I GAAGAC 2 cut(s) 117, 708
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
Bsu15I ATCGAT 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 2 cut(s) 16, 902
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 787
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 3 cut(s) 45, 96, 499
Cac8I GCNNGC 5 cut(s) 150, 375, 490, 825, 904
CaiI CAGNNNCTG 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 902
ClaI ATCGAT 1 cut(s) 65
Csp6I GTAC 2 cut(s) 628, 894
CviAII CATG 5 cut(s) 489, 619, 652, 788, 824
CviQI GTAC 2 cut(s) 628, 894
DdeI CTNAG 3 cut(s) 156, 189, 516
DpnI GATC 5 cut(s) 50, 68, 209, 368, 782
DpnII GATC 5 cut(s) 48, 66, 207, 366, 780
Eam1104I CTCTTC 2 cut(s) 176, 884
EarI CTCTTC 2 cut(s) 176, 884
EciI GGCGGA 2 cut(s) 278, 284
Eco130I CCWWGG 3 cut(s) 453, 787, 804
Eco24I GRGCYC 1 cut(s) 613
Eco31I GGTCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 275, 357
Eco81I CCTNAGG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 631
EcoRII CCWGG 4 cut(s) 132, 529, 604, 613
EcoT14I CCWWGG 3 cut(s) 453, 787, 804
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 3 cut(s) 453, 787, 804
FaeI CATG 5 cut(s) 492, 622, 655, 791, 827
FaqI GGGAC 1 cut(s) 879
FatI CATG 5 cut(s) 488, 618, 651, 787, 823
Fnu4HI GCNGC 3 cut(s) 153, 317, 667
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 3 cut(s) 153, 317, 667
GluI GCNGC 3 cut(s) 153, 317, 667
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 2 cut(s) 16, 902
HapII CCGG 1 cut(s) 903
Hin1II CATG 5 cut(s) 492, 622, 655, 791, 827
HinfI GANTC 4 cut(s) 332, 449, 526, 867
HpaII CCGG 1 cut(s) 903
HphI GGTGA 3 cut(s) 58, 689, 775
Hpy188I TCNGA 7 cut(s) 73, 214, 222, 255, 337, 355, 403
Hpy188III TCNNGA 2 cut(s) 383, 633
HpyAV CCTTC 4 cut(s) 100, 253, 332, 726
HpyCH4III ACNGT 2 cut(s) 40, 97
HpyCH4V TGCA 7 cut(s) 163, 316, 348, 360, 471, 492, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 908
HpyF3I CTNAG 3 cut(s) 156, 189, 516
Hsp92II CATG 5 cut(s) 492, 622, 655, 791, 827
KroI GCCGGC 1 cut(s) 902
KroNI GCCGGC 1 cut(s) 904
Kzo9I GATC 5 cut(s) 48, 66, 207, 366, 780
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 2 cut(s) 164, 328
MaeIII GTNAC 2 cut(s) 91, 846
MalI GATC 5 cut(s) 50, 68, 209, 368, 782
MboI GATC 5 cut(s) 48, 66, 207, 366, 780
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 2 cut(s) 549, 613
MluCI AATT 6 cut(s) 18, 349, 460, 713, 725, 792
MlyI GAGTC 2 cut(s) 520, 861
MroNI GCCGGC 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 459, 644
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 1 cut(s) 903
MspR9I CCNGG 4 cut(s) 134, 531, 606, 615
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 4 cut(s) 134, 531, 606, 615
MwoI GCNNNNNNNGC 2 cut(s) 494, 908
NaeI GCCGGC 1 cut(s) 904
NcoI CCATGG 1 cut(s) 787
NdeII GATC 5 cut(s) 48, 66, 207, 366, 780
NgoMIV GCCGGC 1 cut(s) 902
NlaIII CATG 5 cut(s) 492, 622, 655, 791, 827
NlaIV GGNNCC 1 cut(s) 610
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 2 cut(s) 492, 827
PaeI GCATGC 2 cut(s) 492, 827
PaeR7I CTCGAG 1 cut(s) 631
PctI GAATGC 1 cut(s) 362
PdiI GCCGGC 1 cut(s) 904
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 332, 449
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 3 cut(s) 154, 318, 668
Ple19I CGATCG 1 cut(s) 369
PleI GAGTC 2 cut(s) 520, 861
PpsI GAGTC 2 cut(s) 520, 861
PsiI TTATAA 1 cut(s) 797
Psp6I CCWGG 4 cut(s) 132, 529, 604, 613
PspGI CCWGG 4 cut(s) 132, 529, 604, 613
PspN4I GGNNCC 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 207
PvuI CGATCG 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 2 cut(s) 629, 895
RsaNI GTAC 2 cut(s) 628, 894
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 2 cut(s) 459, 644
SatI GCNGC 3 cut(s) 153, 317, 667
Sau3AI GATC 5 cut(s) 48, 66, 207, 366, 780
SchI GAGTC 2 cut(s) 520, 861
ScrFI CCNGG 4 cut(s) 134, 531, 606, 615
SduI GDGCHC 2 cut(s) 549, 613
SfcI CTRYAG 1 cut(s) 483
Sfr274I CTCGAG 1 cut(s) 631
SlaI CTCGAG 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SphI GCATGC 2 cut(s) 492, 827
Sse9I AATT 6 cut(s) 18, 349, 460, 713, 725, 792
SsiI CCGC 3 cut(s) 263, 269, 666
SspI AATATT 1 cut(s) 582
StyD4I CCNGG 4 cut(s) 132, 529, 604, 613
StyI CCWWGG 3 cut(s) 453, 787, 804
TaaI ACNGT 2 cut(s) 40, 97
TaqI TCGA 4 cut(s) 65, 195, 369, 632
TasI AATT 6 cut(s) 18, 349, 460, 713, 725, 792
TatI WGTACW 2 cut(s) 627, 893
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 2 cut(s) 332, 449
Tru1I TTAA 2 cut(s) 459, 644
Tru9I TTAA 2 cut(s) 459, 644
TscAI CASTG 3 cut(s) 45, 96, 499
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 152, 316
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 112, 635, 662, 668
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 3 cut(s) 45, 96, 499
XceI RCATGY 2 cut(s) 492, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
XhoI CTCGAG 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.