RLG00000004867

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000267
Physical Location & Seq
Reverse (-)
63209220 .. 63212536
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004867

Sequence Viewer

Length: 642 bp
ATGCCCCGTCAAGCGGCGTGTGCATGGGACGTTGTCATCAGACGGGTGTTCTGCGGGTCTACCGGTGAGGGACAATTGGTTCGAGGCCAGAGCAGGTTTCTCAGAAAGCTTTTGTCACATTCGGAGAGGGTAAGGCAAGCGGAAGTGCGCTTGTTCCTTGTTCCTTGTCGACTTGCACAGAGGCGAAGAATCCAAGCAAGGGCCGAGCGGCGAAGGATTTCTGATTTTCGGTGGGGGCAATCTCAGTTTTCAAGGTGGACTACCGGCGCTGGTGCCCCTACATTGGGGTTGAGCAAAGCTGACGGAGGTCGTCATGATCAACCTGGTATTGGATCTGATTTTGGTCTGAGATTGGCATCCATGGCGATCAGGCAGACTGTGCAATGGGATGGAAGTGTTGGGCTATTGGCGATGGGAGATGCAGATCGCTCTAGATTTGGGCTCGGGTCGCAGTTGAGCTTTTGCAAGGATGGTTGGTTGGTGGTTGATCACCGGCACGGGGGTTGGTTGCCTCTGGTATGGAGTTTTGCTGCAATCTCCTTTCTCACTGTTAGGAGGGATCCATGGAGTTCTGACGAGTGGTCGACATATCGACCTGTGGATCTATTAGTGGTCGACATATCGACTTGTGGATCGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.92

Weight (kDa)

10.98

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 208
AccI GTMKAC 4 cut(s) 59, 169, 584, 615
AciI CCGC 4 cut(s) 14, 54, 140, 208
AclWI GGATC 5 cut(s) 340, 554, 567, 609, 640
AfiI CCNNNNNNNGG 6 cut(s) 13, 199, 283, 284, 329, 499
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 1 cut(s) 252
AhdI GACNNNNNGTC 1 cut(s) 580
AjnI CCWGG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 3 cut(s) 109, 299, 459
AluI AGCT 3 cut(s) 109, 299, 459
AlwI GGATC 5 cut(s) 340, 554, 567, 609, 640
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 2 cut(s) 85, 201
ApeKI GCWGC 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AsiGI ACCGGT 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 217
AspLEI GCGC 2 cut(s) 150, 269
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 77, 482
AvaI CYCGRG 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 277
BamHI GGATCC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 517
BccI CCATC 3 cut(s) 383, 406, 464
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 2 cut(s) 316, 487
BfaI CTAG 2 cut(s) 432, 640
BfoI RGCGCY 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 84
BisI GCNGC 3 cut(s) 15, 209, 531
BlsI GCNGC 3 cut(s) 16, 210, 532
Bme1390I CCNGG 1 cut(s) 324
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 274, 561
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 365, 409
BoxI GACNNNNGTC 1 cut(s) 306
Bsa29I ATCGAT 1 cut(s) 635
BsaBI GATNNNNATC 2 cut(s) 355, 423
BsaJI CCNNGG 2 cut(s) 360, 563
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 199, 283, 284, 329, 499
Bse118I RCCGGY 3 cut(s) 62, 263, 492
Bse3DI GCAATG 1 cut(s) 389
Bse8I GATNNNNATC 2 cut(s) 355, 423
BseBI CCWGG 1 cut(s) 324
BseCI ATCGAT 1 cut(s) 635
BseDI CCNNGG 2 cut(s) 360, 563
BseGI GGATG 3 cut(s) 356, 394, 475
BseJI GATNNNNATC 2 cut(s) 355, 423
BseLI CCNNNNNNNGG 6 cut(s) 13, 199, 283, 284, 329, 499
BseMI GCAATG 1 cut(s) 389
BseMII CTCAG 3 cut(s) 115, 257, 338
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 517
BshFI GGCC 2 cut(s) 87, 203
BshNI GGYRCC 1 cut(s) 272
BshTI ACCGGT 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 3 cut(s) 63, 264, 493
BslFI GGGAC 2 cut(s) 41, 84
BslI CCNNNNNNNGG 6 cut(s) 13, 199, 283, 284, 329, 499
BsmFI GGGAC 2 cut(s) 41, 84
BsnI GGCC 2 cut(s) 87, 203
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 277, 444
Bsp143I GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
Bsp19I CCATGG 2 cut(s) 360, 563
BspACI CCGC 4 cut(s) 14, 54, 140, 208
BspANI GGCC 2 cut(s) 87, 203
BspCNI CTCAG 3 cut(s) 114, 256, 339
BspDI ATCGAT 1 cut(s) 635
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 274, 561
BspMI ACCTGC 1 cut(s) 84
BspPI GGATC 5 cut(s) 340, 554, 567, 609, 640
BspT107I GGYRCC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 389
BsrFI RCCGGY 3 cut(s) 62, 263, 492
BssAI RCCGGY 3 cut(s) 62, 263, 492
BssECI CCNNGG 2 cut(s) 360, 563
BssMI GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
BssT1I CCWWGG 2 cut(s) 360, 563
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 379, 550
BstAPI GCANNNNNTGC 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 101, 243, 347
BstDSI CCRYGG 2 cut(s) 360, 563
BstF5I GGATG 3 cut(s) 356, 394, 475
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 150, 269
BstKTI GATC 9 cut(s) 319, 335, 369, 427, 490, 562, 604, 635, 639
BstMBI GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
BstMWI GCNNNNNNNGC 4 cut(s) 20, 362, 379, 448
BstNI CCWGG 1 cut(s) 324
BstPAI GACNNNNGTC 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 517
BstX2I RGATCY 3 cut(s) 332, 559, 601
BstYI RGATCY 3 cut(s) 332, 559, 601
Bsu15I ATCGAT 1 cut(s) 635
BsuRI GGCC 2 cut(s) 87, 203
BsuTUI ATCGAT 1 cut(s) 635
BtgI CCRYGG 2 cut(s) 360, 563
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 3 cut(s) 356, 394, 475
BtsIMutI CAGTG 1 cut(s) 546
BveI ACCTGC 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 313
CfoI GCGC 2 cut(s) 150, 269
Cfr10I RCCGGY 3 cut(s) 62, 263, 492
Cfr13I GGNCC 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 635
CsiI ACCWGGT 1 cut(s) 322
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 4 cut(s) 24, 314, 361, 564
CviJI RGCY 7 cut(s) 87, 109, 203, 299, 403, 442, 459
CviKI_1 RGCY 7 cut(s) 87, 109, 203, 299, 403, 442, 459
DdeI CTNAG 3 cut(s) 101, 243, 347
DpnI GATC 9 cut(s) 318, 334, 368, 426, 489, 561, 603, 634, 638
DpnII GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
DriI GACNNNNNGTC 1 cut(s) 580
Eam1105I GACNNNNNGTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 360, 563
Eco24I GRGCYC 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 360, 563
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 2 cut(s) 360, 563
FaeI CATG 4 cut(s) 27, 317, 364, 567
FaiI YATR 7 cut(s) 25, 315, 362, 520, 565, 589, 620
FaqI GGGAC 2 cut(s) 41, 84
FatI CATG 4 cut(s) 23, 313, 360, 563
FauI CCCGC 1 cut(s) 47
FbaI TGATCA 2 cut(s) 316, 487
FblI GTMKAC 4 cut(s) 59, 169, 584, 615
Fnu4HI GCNGC 3 cut(s) 15, 209, 531
FokI GGATG 3 cut(s) 343, 401, 482
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 3 cut(s) 15, 209, 531
FspBI CTAG 2 cut(s) 432, 640
GlaI GCGC 2 cut(s) 149, 268
GluI GCNGC 3 cut(s) 15, 209, 531
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 87, 203
HapII CCGG 3 cut(s) 63, 264, 493
HhaI GCGC 2 cut(s) 150, 269
Hin1II CATG 4 cut(s) 27, 317, 364, 567
Hin6I GCGC 2 cut(s) 148, 267
HinP1I GCGC 2 cut(s) 148, 267
HincII GTYRAC 3 cut(s) 170, 585, 616
HindII GTYRAC 3 cut(s) 170, 585, 616
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 189
HpaII CCGG 3 cut(s) 63, 264, 493
HphI GGTGA 2 cut(s) 77, 482
Hpy166II GTNNAC 5 cut(s) 60, 170, 258, 585, 616
Hpy188I TCNGA 7 cut(s) 41, 104, 124, 223, 337, 348, 574
Hpy188III TCNNGA 2 cut(s) 314, 432
Hpy8I GTNNAC 5 cut(s) 60, 170, 258, 585, 616
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 379, 550
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 6 cut(s) 23, 176, 382, 422, 465, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 362, 379, 448
HpyF3I CTNAG 3 cut(s) 101, 243, 347
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 4 cut(s) 27, 317, 364, 567
HspAI GCGC 2 cut(s) 148, 267
Ksp22I TGATCA 2 cut(s) 316, 487
Kzo9I GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 2 cut(s) 365, 409
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 2 cut(s) 432, 640
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 114
MalI GATC 9 cut(s) 318, 334, 368, 426, 489, 561, 603, 634, 638
MbiI CCGCTC 1 cut(s) 208
MboI GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
MboII GAAGA 1 cut(s) 198
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 3 cut(s) 332, 559, 601
MhlI GDGCHC 2 cut(s) 277, 444
MluCI AATT 1 cut(s) 74
MnlI CCTC 7 cut(s) 61, 77, 120, 174, 299, 522, 549
MroXI GAANNNNTTC 1 cut(s) 217
MspI CCGG 3 cut(s) 63, 264, 493
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 4 cut(s) 20, 362, 379, 448
NcoI CCATGG 2 cut(s) 360, 563
NdeII GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
NlaIII CATG 4 cut(s) 27, 317, 364, 567
NlaIV GGNNCC 2 cut(s) 274, 561
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 114
PagI TCATGA 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 32
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 3 cut(s) 16, 210, 532
PshAI GACNNNNGTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 274, 561
PspPI GGNCC 1 cut(s) 201
PsuI RGATCY 3 cut(s) 332, 559, 601
PsyI GACNNNGTC 1 cut(s) 32
SalI GTCGAC 3 cut(s) 168, 583, 614
SatI GCNGC 3 cut(s) 15, 209, 531
Sau3AI GATC 9 cut(s) 316, 332, 366, 424, 487, 559, 601, 632, 636
Sau96I GGNCC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 277, 444
SetI ASST 9 cut(s) 33, 98, 111, 257, 301, 310, 325, 461, 598
SexAI ACCWGGT 1 cut(s) 322
SfaNI GCATC 2 cut(s) 365, 409
Sse9I AATT 1 cut(s) 74
SsiI CCGC 4 cut(s) 14, 54, 140, 208
SspMI CTAG 2 cut(s) 432, 640
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 2 cut(s) 360, 563
TaaI ACNGT 2 cut(s) 379, 550
TaiI ACGT 1 cut(s) 33
TaqI TCGA 7 cut(s) 82, 169, 584, 592, 615, 623, 635
TasI AATT 1 cut(s) 74
TauI GCSGC 2 cut(s) 17, 211
TfiI GAWTC 1 cut(s) 189
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 553
Tth111I GACNNNGTC 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 431
XmiI GTMKAC 4 cut(s) 59, 169, 584, 615
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 2 cut(s) 432, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.