Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000267

Physical Location & Seq

Genomic Coordinates Reverse (-)

35161910 .. 35163838

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0322700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAACATGTTGGGTCTGCTGAGAATTCATATCCAAAGAGGAGTGAACCTTGCCGTCAGAGACATGAGAAGCAGCGACCCTTATCTCATTGTCAGAATGGGCAAGCAGAAGCTAAAGACTCGTGTAGTGAAGAAGAGCGTGAATCCTGAGTGGAATGAACAATTGACTCTTTCAATTGCTGATCCAAATCTTCCAATCCTGGTCTCTGTGTATGACAAGGATACATTTAGTTTTGATGACAAAATGGGGGATGCAGAGTTTGAGATTGGTCCATTCATTAAAGCCTTGAAGATGGGTTTCCAAGGCCTTGAAGATGGAGCCATAATTTCTAAAGTGCAGATGAACAAGCAAAACTGTCTAGCTGAAGAGAGCTGCATTATTTACTCCGAAGGCAAACTTGTACAGAACATGGTTCTCAGACTCAGAAATGTCGAGTGCGGGGAAGTGGAACTCCAATTGCAGTGGATTGATGTACCTAGTTCTAGGGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016787 GO:0017171 GO:0019538 GO:0022607 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0070008 GO:0070009 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PD40 Peptidase_S9

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

5.91

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 92	2.9e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis	RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata	RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora	Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa	Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha	Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana	Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	405, 477
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	177, 292, 314
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	115, 365, 375
AluI	AGCT	3 cut(s)	115, 365, 375
Alw26I	GTCTC	2 cut(s)	57, 211
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	75, 375
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	272
BauI	CACGAG	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	87, 362
BccI	CCATC	2 cut(s)	289, 311
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	57, 211
BfaI	CTAG	3 cut(s)	362, 480, 486
BfmI	CTRYAG	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	76, 376
BlsI	GCNGC	2 cut(s)	77, 377
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	304
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	4 cut(s)	14, 141, 433, 439
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	87, 362
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	57, 211
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	4 cut(s)	15, 142, 432, 438
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	211
BsrGI	TGTACA	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	131, 363
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	4 cut(s)	23, 150, 419, 425
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	57, 211
BstMBI	GATC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	87, 362
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	404, 476
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	3 cut(s)	10, 67, 412
CviJI	RGCY	6 cut(s)	115, 287, 309, 323, 365, 375
CviKI_1	RGCY	6 cut(s)	115, 287, 309, 323, 365, 375
CviQI	GTAC	2 cut(s)	404, 476
DdeI	CTNAG	4 cut(s)	23, 150, 419, 425
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	131, 363
EarI	CTCTTC	2 cut(s)	131, 363
Eco130I	CCWWGG	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	13, 70, 415
FaiI	YATR	6 cut(s)	11, 33, 68, 216, 326, 413
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	3 cut(s)	9, 66, 411
FauI	CCCGC	1 cut(s)	434
Fnu4HI	GCNGC	2 cut(s)	76, 376
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	76, 376
FspBI	CTAG	3 cut(s)	362, 480, 486
GluI	GCNGC	2 cut(s)	76, 376
HaeIII	GGCC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	13, 70, 415
HinfI	GANTC	4 cut(s)	121, 145, 169, 423
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	5 cut(s)	62, 98, 391, 422, 428
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	257, 340, 378, 463
HpyF3I	CTNAG	4 cut(s)	23, 150, 419, 425
Hsp92II	CATG	3 cut(s)	13, 70, 415
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	3 cut(s)	162, 188, 215
Lsp1109I	GCAGC	2 cut(s)	87, 362
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	3 cut(s)	362, 480, 486
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	6 cut(s)	145, 148, 185, 304, 326, 380
MfeI	CAATTG	3 cut(s)	164, 177, 458
MluCI	AATT	5 cut(s)	27, 164, 177, 327, 458
MlyI	GAGTC	3 cut(s)	115, 163, 417
MnlI	CCTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	3 cut(s)	164, 177, 458
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	13, 70, 415
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	309
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	77, 377
PleI	GAGTC	3 cut(s)	115, 163, 417
PpsI	GAGTC	3 cut(s)	115, 163, 417
PscI	ACATGT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	2 cut(s)	405, 477
RsaNI	GTAC	2 cut(s)	404, 476
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	76, 376
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	3 cut(s)	115, 163, 417
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	54, 117, 367, 377, 481
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	5 cut(s)	27, 164, 177, 327, 458
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	3 cut(s)	362, 480, 486
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	435
TasI	AATT	5 cut(s)	27, 164, 177, 327, 458
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	2 cut(s)	75, 375
TspDTI	ATGAA	4 cut(s)	20, 174, 268, 359
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	3 cut(s)	362, 480, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.