Rh4CG163300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000267
Physical Location & Seq
Reverse (-)
35855546 .. 35855911
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG163300.1

Sequence Viewer

Length: 366 bp
ATGCCGGCAACGGCATCGGCTGATGAAGATCGCCCGGCCTGTTGGTTGGTAGCTGATCACCGATGCGTGGGTTCGTGGACGCCGGTAGGGCAGTCTGCTGCAACGTTCTCTCTCGTTGTGACAAGGGATTCATGGAGTTCTGACGGAAGATCGATATATCGACCTGTGGTACGATCTGGATCCGCTTTGGATCTGGTGTGCTTCGTGGTCAAGTCGTCGTCGTCGTCAGCTAGAGTTATAAGCAGGTCGCAGCAGGGTGATATGGCGGTGGTTCCGATCTGGTGGCACTCGGGATGGCTGTTGCCTGTCGTTGTCGGCAGTTTGTGTTGGGCCTATGTGGTTGGGCCCTTGCTACAGGGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.0

Weight (kDa)

7.65

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 234
AciI CCGC 2 cut(s) 183, 266
AclI AACGTT 1 cut(s) 104
AclWI GGATC 3 cut(s) 174, 187, 198
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 53, 230
AluI AGCT 2 cut(s) 53, 230
AlwI GGATC 3 cut(s) 174, 187, 198
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 3 cut(s) 36, 330, 344
ApaI GGGCCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 98, 250
AspS9I GGNCC 3 cut(s) 330, 344, 345
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 50, 269
AvaI CYCGRG 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 348
BamHI GGATCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 85, 262
BccI CCATC 1 cut(s) 288
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 1 cut(s) 31
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 35
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 234
BglI GCCNNNNNGGC 1 cut(s) 88
BisI GCNGC 2 cut(s) 99, 251
BlsI GCNGC 2 cut(s) 100, 252
Bme1390I CCNGG 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 330, 344, 345
BmiI GGNNCC 3 cut(s) 181, 273, 346
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 2 cut(s) 23, 53
BpuMI CCSGG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 152
BsaBI GATNNNNATC 2 cut(s) 27, 178
BsaHI GRCGYC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 2 cut(s) 4, 82
Bse8I GATNNNNATC 2 cut(s) 27, 178
BseCI ATCGAT 1 cut(s) 152
BseGI GGATG 2 cut(s) 299, 365
BseJI GATNNNNATC 2 cut(s) 27, 178
BseLI CCNNNNNNNGG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 2 cut(s) 85, 262
BshFI GGCC 3 cut(s) 38, 332, 346
BshVI ATCGAT 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 3 cut(s) 5, 35, 83
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 3 cut(s) 38, 332, 346
BsoBI CYCGRG 1 cut(s) 289
Bsp120I GGGCCC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
BspACI CCGC 2 cut(s) 183, 266
BspANI GGCC 3 cut(s) 38, 332, 346
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 3 cut(s) 181, 273, 346
BspMI ACCTGC 1 cut(s) 234
BspPI GGATC 3 cut(s) 174, 187, 198
BsrFI RCCGGY 2 cut(s) 4, 82
BssAI RCCGGY 2 cut(s) 4, 82
BssMI GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
BssNI GRCGYC 1 cut(s) 80
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 2 cut(s) 299, 365
BstKTI GATC 7 cut(s) 31, 58, 152, 176, 182, 193, 279
BstMBI GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 353
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 85, 262
BstX2I RGATCY 2 cut(s) 179, 190
BstYI RGATCY 2 cut(s) 179, 190
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 3 cut(s) 38, 332, 346
BsuTUI ATCGAT 1 cut(s) 152
BtsCI GGATG 2 cut(s) 299, 365
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 2 cut(s) 4, 82
Cfr13I GGNCC 3 cut(s) 330, 344, 345
ClaI ATCGAT 1 cut(s) 152
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 132
CviJI RGCY 7 cut(s) 20, 38, 53, 230, 298, 332, 346
CviKI_1 RGCY 7 cut(s) 20, 38, 53, 230, 298, 332, 346
CviQI GTAC 1 cut(s) 170
DpnI GATC 7 cut(s) 30, 57, 151, 175, 181, 192, 278
DpnII GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
Eco24I GRGCYC 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 1 cut(s) 135
FaiI YATR 5 cut(s) 133, 157, 239, 263, 336
FatI CATG 1 cut(s) 131
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 99, 251
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 99, 251
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 99, 251
HaeIII GGCC 3 cut(s) 38, 332, 346
HapII CCGG 3 cut(s) 5, 35, 83
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 1 cut(s) 135
HinfI GANTC 1 cut(s) 128
HpaII CCGG 3 cut(s) 5, 35, 83
HphI GGTGA 2 cut(s) 50, 269
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 2 cut(s) 142, 276
Hpy188III TCNNGA 2 cut(s) 177, 291
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 3 cut(s) 220, 223, 226
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpySE526I ACGT 1 cut(s) 104
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 135
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
Lsp1109I GCAGC 2 cut(s) 85, 262
LweI GCATC 2 cut(s) 23, 53
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 118
MalI GATC 7 cut(s) 30, 57, 151, 175, 181, 192, 278
MboI GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
MboII GAAGA 2 cut(s) 38, 159
MflI RGATCY 2 cut(s) 179, 190
MhlI GDGCHC 1 cut(s) 348
MroNI GCCGGC 1 cut(s) 4
MspI CCGG 3 cut(s) 5, 35, 83
MspR9I CCNGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 88
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 35
NdeII GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 135
NlaIV GGNNCC 3 cut(s) 181, 273, 346
NmuCI GTSAC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 100, 252
PsiI TTATAA 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 181, 273, 346
PspOMI GGGCCC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 330, 344, 345
PsuI RGATCY 2 cut(s) 179, 190
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SatI GCNGC 2 cut(s) 99, 251
Sau3AI GATC 7 cut(s) 28, 55, 149, 173, 179, 190, 276
Sau96I GGNCC 3 cut(s) 330, 344, 345
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 348
SetI ASST 5 cut(s) 55, 107, 166, 232, 248
SfaNI GCATC 2 cut(s) 23, 53
SfcI CTRYAG 1 cut(s) 353
SsiI CCGC 2 cut(s) 183, 266
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 33
TaiI ACGT 1 cut(s) 107
TaqI TCGA 2 cut(s) 152, 160
TfiI GAWTC 1 cut(s) 128
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 98, 250
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 39, 120
TspGWI ACGGA 1 cut(s) 159
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.