RchiOBHm_Chr4g0427731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Reverse (-)
52913879 .. 52914565
687 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39664

Sequence Viewer

Length: 687 bp
ATGGCATGGGCGGCTCAGGCGGGATGGTGGTGTCGTGGAGTCTGCAACCTGACTTTTTGGCTTGGGCCTGATGGTTTGTGGGTCTGGGCTTTGGCTTTGGACCTTTGCTATTTTCTAATTTTAATTTCCTGCTTTTTAATTTTATATTTAGTAAGATGTGGCTTAATGCCGGTAATAAGTCTCTACCACTATTGGGTAGGGCGGCGTGGGTTTTGTCCCGGTATGCATACTCAGTGTGCCTTGTCTGGTTTAACGAGGCAGCAAGCTATTTGCATGATCAAATGGACGCAATCTCCTAGTGGCAGGATGAAACGAAGTGTCGCCAGATTTACTTCCATGCGGCAACATAGTGGGAAAGCTGTGCTATTTGTAATGATGTTTTTTTGTGATAGAGTTATCTTTCCGGTATGTCACCGCTATGTCAAAGCAAATAGAGTAGCCATTGGTGCACTCTTTGCTAATTGGTGCTTGTTAGAATATATAGATTTTGTGGGGGCTTTTGGTATTATTTCAAGAGATTCTCTCGATATTTATTGTAATTTGGGGTTCAAGCTTCACGTCCCCCCCCCTTTATTCTGCAGTTTCATTAATCAAGGTTTGAGGGCAGCCGCACCAGCCCCCTTTCAAAAAAAAAAACTTGCTTATTTGCTAGAGATTAGAAATCAAGTCCAAACATATGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.09

Weight (kDa)

9.42

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 11, 20, 202, 340, 415, 609
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 3 cut(s) 513, 550, 626
AjiI CACGTC 1 cut(s) 559
AluBI AGCT 3 cut(s) 266, 359, 553
AluI AGCT 3 cut(s) 266, 359, 553
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 185
Alw44I GTGCAC 1 cut(s) 447
AoxI GGCC 1 cut(s) 65
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 259, 605
AseI ATTAAT 1 cut(s) 588
AspS9I GGNCC 2 cut(s) 65, 100
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 271, 617
BccI CCATC 2 cut(s) 18, 65
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 297, 650
BfmI CTRYAG 1 cut(s) 577
BisI GCNGC 6 cut(s) 12, 203, 260, 341, 606, 609
BlsI GCNGC 6 cut(s) 13, 204, 261, 342, 607, 610
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 2 cut(s) 65, 100
BmrFI CCNGG 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 507, 539
Bpu10I CCTNAGC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 169
BseGI GGATG 2 cut(s) 29, 312
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 29, 245
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 2 cut(s) 271, 617
BshFI GGCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 3 cut(s) 170, 219, 404
BslFI GGGAC 2 cut(s) 201, 545
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 2 cut(s) 201, 545
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 6 cut(s) 11, 20, 202, 340, 415, 609
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 2 cut(s) 28, 244
BspMAI CTGCAG 1 cut(s) 581
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssMI GATC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 2 cut(s) 15, 231
BstF5I GGATG 2 cut(s) 29, 312
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 5 cut(s) 11, 17, 446, 455, 614
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 577
BstSLI GKGCMC 1 cut(s) 451
BstV1I GCAGC 2 cut(s) 271, 617
BsuRI GGCC 1 cut(s) 67
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 2 cut(s) 29, 312
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 65, 100
CseI GACGC 1 cut(s) 295
CviAII CATG 3 cut(s) 6, 274, 337
DdeI CTNAG 2 cut(s) 15, 231
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 228
FaeI CATG 3 cut(s) 9, 277, 340
FaqI GGGAC 2 cut(s) 201, 545
FatI CATG 3 cut(s) 5, 273, 336
FauI CCCGC 1 cut(s) 13
FauNDI CATATG 1 cut(s) 676
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 6 cut(s) 12, 203, 260, 341, 606, 609
FokI GGATG 2 cut(s) 36, 319
Fsp4HI GCNGC 6 cut(s) 12, 203, 260, 341, 606, 609
FspBI CTAG 2 cut(s) 297, 650
GluI GCNGC 6 cut(s) 12, 203, 260, 341, 606, 609
HaeIII GGCC 1 cut(s) 67
HapII CCGG 3 cut(s) 170, 219, 404
HgaI GACGC 1 cut(s) 295
Hin1II CATG 3 cut(s) 9, 277, 340
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 2 cut(s) 39, 518
HpaII CCGG 3 cut(s) 170, 219, 404
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 449
Hpy188III TCNNGA 2 cut(s) 513, 524
Hpy8I GTNNAC 1 cut(s) 449
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 5 cut(s) 45, 226, 273, 449, 579
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 17, 446, 455, 614
HpyF3I CTNAG 2 cut(s) 15, 231
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 3 cut(s) 9, 277, 340
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 1 cut(s) 276
Lsp1109I GCAGC 2 cut(s) 271, 617
MaeI CTAG 2 cut(s) 297, 650
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 5 cut(s) 117, 123, 138, 460, 538
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 2 cut(s) 249, 594
Mph1103I ATGCAT 1 cut(s) 228
MseI TTAA 5 cut(s) 122, 137, 164, 251, 588
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 3 cut(s) 170, 219, 404
MspR9I CCNGG 1 cut(s) 219
MwoI GCNNNNNNNGC 5 cut(s) 11, 17, 446, 455, 614
NciI CCSGG 1 cut(s) 219
NdeI CATATG 1 cut(s) 676
NdeII GATC 1 cut(s) 276
NlaIII CATG 3 cut(s) 9, 277, 340
NmuCI GTSAC 1 cut(s) 410
NsiI ATGCAT 1 cut(s) 228
PfeI GAWTC 1 cut(s) 518
PkrI GCNGC 6 cut(s) 13, 204, 261, 342, 607, 610
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 588
PspPI GGNCC 2 cut(s) 65, 100
PstI CTGCAG 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 5 cut(s) 122, 137, 164, 251, 588
SatI GCNGC 6 cut(s) 12, 203, 260, 341, 606, 609
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 65, 100
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 451
SetI ASST 7 cut(s) 51, 105, 268, 361, 555, 561, 598
SfcI CTRYAG 1 cut(s) 577
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 5 cut(s) 117, 123, 138, 460, 538
SsiI CCGC 6 cut(s) 11, 20, 202, 340, 415, 609
SspMI CTAG 2 cut(s) 297, 650
StyD4I CCNGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 561
TaqI TCGA 1 cut(s) 525
TasI AATT 5 cut(s) 117, 123, 138, 460, 538
TauI GCSGC 4 cut(s) 14, 205, 343, 611
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 5 cut(s) 122, 137, 164, 251, 588
Tru9I TTAA 5 cut(s) 122, 137, 164, 251, 588
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 2 cut(s) 259, 605
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 323, 574
TspRI CASTG 1 cut(s) 239
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 100
VspI ATTAAT 1 cut(s) 588
XspI CTAG 2 cut(s) 297, 650
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.