FvH4_5g00140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000267
Physical Location & Seq
Reverse (-)
91214 .. 92199
986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00140.t1

Sequence Viewer

Length: 900 bp
ATGCATCCCTGTCCGGCGGCGTGCTCTCTCGCCGTCGTCGGACAGGCCTTGGTGAGGAAGGGTGAAGGCGGGGCTCTGCTTGGATGTTGGTTCTCCCATTGTTGGTCTGATCGACGGAGGGGATGGGGTGCGCTGCAATGGTGGTGGCTGGGAACTGGAGAGATTGTGGCGACGCGGCTAGGCTTCGATCAGATCACTCCGAACGGGTTAAGATCTTTTCGATCTGGTCTGGAGGTGAGGTTGCAGAGCAAGGGTTGTGTTCTTCTGCGCGAGGGGGAGGGCAGAGTGGGTTGGGCGCTCCGGCGATGCAGACGCGGCCGAGTAGGTGGTGAACCATCGACGACGGCCGGCGATGGGATTGACCAGGTTCGGCGAGCACCGTGTTTTCTTCTTCTTGATTCTTCTGTGGAAGATTGGGCCTTGTCTCTTTATTTGGGCTTGGCTGTGGTATTTTGTTTTTCAGTTGTAATTTATTTTAAGTTTACAATAAGTCCTGATCTCTATCTGATCTGGATACGTGGGTTACATCTCGGTTTGTGCGATTTGCGTACCATGTTTGCTCTTGGAAGGCGGCGAGTTTCTTATTTCGTCAAATGGTCGCAACCTCCCAGTGGCAAGATGAAACTCAGTGTCACTGGTAATCTATTCCAGTGGCAACATAGTAGGAAAGCTGTTAGACATAGTAACTTATGGCTCTGCACGAGCATTGTCTTTCCGGTATGTCACCAAAATTGTAAAGCAAATGGAGTAGCCACTGATGCACTCCTTGCTAAATGGTGCTTGTTAGAATGCATAGGATTGAGAACTCTTGATATTATTTCGGGATGTTCAGGCAATATGGGGTTTAGGTTTTATGTCCCCCCCTTGTATTCTGCGGTTTCGTTAATGGTTAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.34

Weight (kDa)

9.63

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 175, 270, 315
AciI CCGC 6 cut(s) 17, 69, 175, 315, 571, 875
AcoI YGGCCR 2 cut(s) 316, 345
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 4 cut(s) 54, 102, 354, 611
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 1 cut(s) 671
AluI AGCT 1 cut(s) 671
Alw21I GWGCWC 2 cut(s) 26, 379
Alw26I GTCTC 1 cut(s) 429
AoxI GGCC 4 cut(s) 45, 316, 345, 417
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 3 cut(s) 133, 270, 298
AspS9I GGNCC 1 cut(s) 417
AsuHPI GGTGA 5 cut(s) 64, 74, 247, 341, 716
BaeI ACNNNNGTAYC 2 cut(s) 506, 539
BanII GRGCYC 1 cut(s) 76
BauI CACGAG 1 cut(s) 700
Bbv12I GWGCWC 2 cut(s) 26, 379
BbvI GCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 117, 343, 347
BceAI ACGGC 2 cut(s) 17, 360
BciT130I CCWGG 1 cut(s) 365
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 299
BfuI GTATCC 1 cut(s) 507
BglII AGATCT 1 cut(s) 212
BisI GCNGC 5 cut(s) 18, 134, 176, 316, 572
BlsI GCNGC 5 cut(s) 19, 135, 177, 317, 573
Bme1390I CCNGG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 365
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 3 cut(s) 13, 296, 748
BmuI ACTGGG 1 cut(s) 603
BpmI CTGGAG 2 cut(s) 177, 251
BsaAI YACGTR 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 102, 354, 611
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 4 cut(s) 160, 609, 640, 649
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 4 cut(s) 4, 89, 128, 830
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 4 cut(s) 54, 102, 354, 611
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 640
BseNI ACTGG 4 cut(s) 160, 609, 640, 649
BseX3I CGGCCG 2 cut(s) 316, 345
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 148
BsgI GTGCAG 1 cut(s) 682
Bsh1236I CGCG 3 cut(s) 175, 270, 315
Bsh1285I CGRYCG 2 cut(s) 319, 348
BshFI GGCC 4 cut(s) 47, 318, 347, 419
BsiEI CGRYCG 2 cut(s) 319, 348
BsiHKAI GWGCWC 2 cut(s) 26, 379
BsiSI CCGG 4 cut(s) 14, 301, 348, 716
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 4 cut(s) 54, 102, 354, 611
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 842
BsmI GAATGC 1 cut(s) 794
BsnI GGCC 4 cut(s) 47, 318, 347, 419
Bsp1286I GDGCHC 3 cut(s) 26, 76, 379
Bsp143I GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
BspACI CCGC 6 cut(s) 17, 69, 175, 315, 571, 875
BspANI GGCC 4 cut(s) 47, 318, 347, 419
BspCNI CTCAG 1 cut(s) 639
BspFNI CGCG 3 cut(s) 175, 270, 315
BsrDI GCAATG 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 4 cut(s) 160, 609, 640, 649
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
BssSI CACGAG 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 700
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 767
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 22, 349, 375
BstDEI CTNAG 1 cut(s) 626
BstENI CCTNNNNNAGG 1 cut(s) 52
BstF5I GGATG 4 cut(s) 4, 89, 128, 830
BstFNI CGCG 3 cut(s) 175, 270, 315
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 3 cut(s) 133, 270, 298
BstKTI GATC 7 cut(s) 112, 190, 195, 215, 224, 499, 510
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
BstMCI CGRYCG 2 cut(s) 319, 348
BstMWI GCNNNNNNNGC 3 cut(s) 315, 758, 767
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 3 cut(s) 175, 270, 315
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BstZI CGGCCG 2 cut(s) 316, 345
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 4 cut(s) 47, 318, 347, 419
BtgZI GCGATG 2 cut(s) 319, 366
BtsCI GGATG 4 cut(s) 4, 89, 128, 830
BtsIMutI CAGTG 5 cut(s) 616, 633, 634, 656, 753
Cac8I GCNNGC 3 cut(s) 22, 349, 375
CfoI GCGC 3 cut(s) 133, 270, 298
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 417
CseI GACGC 2 cut(s) 181, 321
CsiI ACCWGGT 1 cut(s) 363
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 125, 160
CviAII CATG 2 cut(s) 553, 897
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 1 cut(s) 626
DpnI GATC 7 cut(s) 111, 189, 194, 214, 223, 498, 509
DpnII GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
EaeI YGGCCR 2 cut(s) 316, 345
EagI CGGCCG 2 cut(s) 316, 345
EclXI CGGCCG 2 cut(s) 316, 345
Eco130I CCWWGG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 76
Eco52I CGGCCG 2 cut(s) 316, 345
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 2 cut(s) 6, 794
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 556, 900
FaiI YATR 9 cut(s) 554, 660, 681, 691, 721, 794, 839, 855, 898
FaqI GGGAC 1 cut(s) 842
FatI CATG 2 cut(s) 552, 896
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 5 cut(s) 18, 134, 176, 316, 572
FokI GGATG 3 cut(s) 96, 135, 837
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 5 cut(s) 18, 134, 176, 316, 572
FspBI CTAG 1 cut(s) 179
GlaI GCGC 3 cut(s) 132, 269, 297
GluI GCNGC 5 cut(s) 18, 134, 176, 316, 572
GsaI CCCAGC 1 cut(s) 152
GsuI CTGGAG 2 cut(s) 177, 251
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 4 cut(s) 47, 318, 347, 419
HapII CCGG 4 cut(s) 14, 301, 348, 716
HgaI GACGC 2 cut(s) 181, 321
HhaI GCGC 3 cut(s) 133, 270, 298
Hin1II CATG 2 cut(s) 556, 900
Hin6I GCGC 3 cut(s) 131, 268, 296
HinP1I GCGC 3 cut(s) 131, 268, 296
HinfI GANTC 1 cut(s) 398
HpaII CCGG 4 cut(s) 14, 301, 348, 716
HphI GGTGA 5 cut(s) 64, 74, 247, 341, 716
Hpy166II GTNNAC 2 cut(s) 332, 483
Hpy188I TCNGA 5 cut(s) 41, 109, 192, 201, 507
Hpy188III TCNNGA 6 cut(s) 230, 395, 494, 511, 809, 822
Hpy8I GTNNAC 2 cut(s) 332, 483
Hpy99I CGWCG 6 cut(s) 38, 41, 117, 175, 343, 346
HpyAV CCTTC 3 cut(s) 52, 59, 561
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 7 cut(s) 4, 136, 244, 309, 699, 761, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 315, 758, 767
HpyF3I CTNAG 1 cut(s) 626
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 2 cut(s) 556, 900
HspAI GCGC 3 cut(s) 131, 268, 296
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Kzo9I GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 3 cut(s) 13, 296, 748
MabI ACCWGGT 1 cut(s) 363
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 4 cut(s) 522, 631, 683, 722
MalI GATC 7 cut(s) 111, 189, 194, 214, 223, 498, 509
MboI GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
MboII GAAGA 5 cut(s) 254, 380, 383, 393, 422
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 3 cut(s) 26, 76, 379
MluCI AATT 2 cut(s) 468, 730
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 7 cut(s) 48, 111, 226, 231, 265, 271, 615
Mph1103I ATGCAT 2 cut(s) 6, 794
MroNI GCCGGC 1 cut(s) 347
MseI TTAA 4 cut(s) 209, 477, 884, 891
MspI CCGG 4 cut(s) 14, 301, 348, 716
MspR9I CCNGG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 794
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 3 cut(s) 175, 270, 315
MwoI GCNNNNNNNGC 3 cut(s) 315, 758, 767
NaeI GCCGGC 1 cut(s) 349
NdeII GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 2 cut(s) 556, 900
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 2 cut(s) 631, 722
NsiI ATGCAT 2 cut(s) 6, 794
PceI AGGCCT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 794
PdiI GCCGGC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 5 cut(s) 19, 135, 177, 317, 573
Ppu21I YACGTR 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 363
PspPI GGNCC 1 cut(s) 417
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SaqAI TTAA 4 cut(s) 209, 477, 884, 891
SatI GCNGC 5 cut(s) 18, 134, 176, 316, 572
Sau3AI GATC 7 cut(s) 109, 187, 192, 212, 221, 496, 507
Sau96I GGNCC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 3 cut(s) 26, 76, 379
SetI ASST 8 cut(s) 237, 242, 328, 369, 520, 607, 673, 851
SexAI ACCWGGT 1 cut(s) 363
SfaNI GCATC 3 cut(s) 13, 296, 748
Sse9I AATT 2 cut(s) 468, 730
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 6 cut(s) 17, 69, 175, 315, 571, 875
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 1 cut(s) 520
TaqI TCGA 4 cut(s) 112, 186, 220, 338
TasI AATT 2 cut(s) 468, 730
TauI GCSGC 4 cut(s) 20, 178, 318, 574
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 4 cut(s) 209, 477, 884, 891
Tru9I TTAA 4 cut(s) 209, 477, 884, 891
TscAI CASTG 5 cut(s) 616, 634, 640, 656, 760
TseFI GTSAC 2 cut(s) 631, 722
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 2 cut(s) 631, 722
TspDTI ATGAA 1 cut(s) 635
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 5 cut(s) 616, 634, 640, 656, 760
XagI CCTNNNNNAGG 1 cut(s) 52
XspI CTAG 1 cut(s) 179
Zsp2I ATGCAT 2 cut(s) 6, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.