Rmu_sc0005715.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005715.1
OG0000267
Physical Location & Seq
Reverse (-)
39470 .. 40369
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005715.1_g000010.1.cds

Sequence Viewer

Length: 900 bp
atgaggcagtgggttggaggtgttgggctgccggcaacggcaacgagtgatgcagatcgtttccgatctgggctcgggtcgtggttgagcgttggcacggcttgttggttggtggctgatcacagacgcggggattggtggctgccggtatggaggtctactgcaatcttttctctcattagagattcatggagttctgacgggtggttgacataccgacctggggtacaatctggatccgattgggatctggtatgcttcgtggtcaggtcgtcatcgtcagccggagttatatgcaggttgcggcatggtgatatggcggcggtttcgatctggtggcgcttgggatggttgctagccttcgttgcaaaggggacggcaatttgggttgggcctgtgttgttgggcccctattggaggactgctagggttttcttttgtgttgtttatttcttgtatttaatttactgctttgtgttagtaataaatccctactctataacagtagggcgggtcaggctttttgtctgggtgtgcactcttagtgccttgtctgtcctagagaggaggctagtctttatcaaatggacgcaaccccctagtggcaggatgaaacgtagtgtcgttggagattctaatcgacagcatagtgggaaagcagatttcattgttttatggctttatatgagctttatctttccggtatgtcaccgttgtaaagcaaatggagttgcccagttatctggtatgtcaacccttgctagttggtgcatgtttgaatacatagaattagtgggagctcccgttattatccaggatgttctctcgttactaattgtgcggggtttcggctttacgtccccccctttgtattcagcagtttcattaatgaaggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.61

Weight (kDa)

9.73

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 158
AccII CGCG 1 cut(s) 129
AciI CCGC 6 cut(s) 129, 304, 320, 323, 511, 841
AclWI GGATC 3 cut(s) 231, 244, 255
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 223, 417, 602
AgsI TTSAA 1 cut(s) 779
AjnI CCWGG 2 cut(s) 220, 813
AluBI AGCT 2 cut(s) 690, 800
AluI AGCT 2 cut(s) 690, 800
Alw21I GWGCWC 2 cut(s) 539, 802
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 3 cut(s) 231, 244, 255
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 2 cut(s) 392, 406
ApaI GGGCCC 1 cut(s) 410
ApaLI GTGCAC 1 cut(s) 535
ApeKI GCWGC 2 cut(s) 28, 142
AseI ATTAAT 1 cut(s) 887
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 392, 406, 407
AsuHPI GGTGA 2 cut(s) 323, 701
AsuNHI GCTAGC 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 74
BaeGI GKGCMC 2 cut(s) 410, 539
BamHI GGATCC 1 cut(s) 236
BanII GRGCYC 3 cut(s) 75, 410, 802
Bbv12I GWGCWC 2 cut(s) 539, 802
BbvI GCAGC 2 cut(s) 15, 129
BccI CCATC 1 cut(s) 342
BceAI ACGGC 3 cut(s) 54, 114, 393
BciT130I CCWGG 2 cut(s) 222, 815
BclI TGATCA 1 cut(s) 118
BfaI CTAG 6 cut(s) 356, 426, 560, 572, 600, 762
BfoI RGCGCY 1 cut(s) 343
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 4 cut(s) 29, 143, 305, 321
BlsI GCNGC 4 cut(s) 30, 144, 306, 322
Bme1390I CCNGG 2 cut(s) 222, 815
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 3 cut(s) 392, 406, 407
BmiI GGNNCC 3 cut(s) 238, 408, 409
BmrFI CCNGG 2 cut(s) 222, 815
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 1 cut(s) 40
BmtI GCTAGC 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 730
BsaBI GATNNNNATC 3 cut(s) 54, 246, 636
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 700
BsaXI ACNNNNNCTCC 2 cut(s) 789, 819
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 417, 602
Bse118I RCCGGY 2 cut(s) 31, 145
Bse1I ACTGG 1 cut(s) 736
Bse8I GATNNNNATC 3 cut(s) 54, 246, 636
BseBI CCWGG 2 cut(s) 222, 815
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 3 cut(s) 353, 615, 823
BseJI GATNNNNATC 3 cut(s) 54, 246, 636
BseLI CCNNNNNNNGG 3 cut(s) 223, 417, 602
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 1 cut(s) 580
BseSI GKGCMC 2 cut(s) 410, 539
BseXI GCAGC 2 cut(s) 15, 129
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 394, 408
BsiHKAI GWGCWC 2 cut(s) 539, 802
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 4 cut(s) 32, 146, 285, 701
BslFI GGGAC 2 cut(s) 388, 844
BslI CCNNNNNNNGG 3 cut(s) 223, 417, 602
BsmFI GGGAC 2 cut(s) 388, 844
BsnI GGCC 2 cut(s) 394, 408
BsoBI CYCGRG 1 cut(s) 74
Bsp120I GGGCCC 1 cut(s) 406
Bsp1286I GDGCHC 4 cut(s) 75, 410, 539, 802
Bsp143I GATC 6 cut(s) 55, 65, 118, 236, 247, 330
BspACI CCGC 6 cut(s) 129, 304, 320, 323, 511, 841
BspANI GGCC 2 cut(s) 394, 408
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 238, 408, 409
BspMI ACCTGC 1 cut(s) 288
BspOI GCTAGC 1 cut(s) 359
BspPI GGATC 3 cut(s) 231, 244, 255
BsrFI RCCGGY 2 cut(s) 31, 145
BsrI ACTGG 1 cut(s) 736
BssAI RCCGGY 2 cut(s) 31, 145
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 6 cut(s) 55, 65, 118, 236, 247, 330
Bst2UI CCWGG 2 cut(s) 222, 815
Bst4CI ACNGT 2 cut(s) 505, 713
BstC8I GCNNGC 2 cut(s) 33, 357
BstDEI CTNAG 1 cut(s) 542
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 3 cut(s) 353, 615, 823
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 6 cut(s) 58, 68, 121, 239, 250, 333
BstMBI GATC 6 cut(s) 55, 65, 118, 236, 247, 330
BstMWI GCNNNNNNNGC 2 cut(s) 365, 517
BstNI CCWGG 2 cut(s) 222, 815
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 2 cut(s) 220, 813
BstSLI GKGCMC 2 cut(s) 410, 539
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 15, 129
BstX2I RGATCY 2 cut(s) 236, 247
BstXI CCANNNNNNTGG 1 cut(s) 743
BstYI RGATCY 2 cut(s) 236, 247
BsuRI GGCC 2 cut(s) 394, 408
BtsCI GGATG 3 cut(s) 353, 615, 823
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 33, 357
CfoI GCGC 1 cut(s) 342
Cfr10I RCCGGY 2 cut(s) 31, 145
Cfr13I GGNCC 3 cut(s) 392, 406, 407
CseI GACGC 2 cut(s) 135, 598
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 189, 308, 772
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 542
DpnI GATC 6 cut(s) 57, 67, 120, 238, 249, 332
DpnII GATC 6 cut(s) 55, 65, 118, 236, 247, 330
Ecl136II GAGCTC 1 cut(s) 800
Eco24I GRGCYC 3 cut(s) 75, 410, 802
Eco53kI GAGCTC 1 cut(s) 800
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 800
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 220, 813
EcoT38I GRGCYC 3 cut(s) 75, 410, 802
FaeI CATG 3 cut(s) 192, 311, 775
FaqI GGGAC 2 cut(s) 388, 844
FatI CATG 3 cut(s) 188, 307, 771
FauI CCCGC 3 cut(s) 122, 504, 834
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 4 cut(s) 29, 143, 305, 321
FokI GGATG 3 cut(s) 360, 622, 830
FriOI GRGCYC 3 cut(s) 75, 410, 802
Fsp4HI GCNGC 4 cut(s) 29, 143, 305, 321
FspBI CTAG 6 cut(s) 356, 426, 560, 572, 600, 762
GlaI GCGC 1 cut(s) 341
GluI GCNGC 4 cut(s) 29, 143, 305, 321
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 2 cut(s) 394, 408
HapII CCGG 4 cut(s) 32, 146, 285, 701
HgaI GACGC 2 cut(s) 135, 598
HhaI GCGC 1 cut(s) 342
Hin1II CATG 3 cut(s) 192, 311, 775
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 2 cut(s) 210, 753
HindII GTYRAC 2 cut(s) 210, 753
HinfI GANTC 2 cut(s) 185, 632
HpaII CCGG 4 cut(s) 32, 146, 285, 701
HphI GGTGA 2 cut(s) 323, 701
Hpy166II GTNNAC 4 cut(s) 159, 210, 537, 753
Hpy188I TCNGA 3 cut(s) 65, 199, 241
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 4 cut(s) 159, 210, 537, 753
HpyAV CCTTC 2 cut(s) 370, 886
HpyCH4III ACNGT 2 cut(s) 505, 713
HpyCH4IV ACGT 2 cut(s) 616, 857
HpyCH4V TGCA 6 cut(s) 53, 164, 297, 368, 537, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 517
HpyF3I CTNAG 1 cut(s) 542
HpySE526I ACGT 2 cut(s) 616, 857
Hsp92II CATG 3 cut(s) 192, 311, 775
HspAI GCGC 1 cut(s) 340
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 6 cut(s) 55, 65, 118, 236, 247, 330
LmnI GCTCC 2 cut(s) 797, 805
Lsp1109I GCAGC 2 cut(s) 15, 129
LweI GCATC 1 cut(s) 40
MaeI CTAG 6 cut(s) 356, 426, 560, 572, 600, 762
MaeII ACGT 2 cut(s) 616, 857
MaeIII GTNAC 2 cut(s) 707, 828
MalI GATC 6 cut(s) 57, 67, 120, 238, 249, 332
MboI GATC 6 cut(s) 55, 65, 118, 236, 247, 330
MflI RGATCY 2 cut(s) 236, 247
MhlI GDGCHC 4 cut(s) 75, 410, 539, 802
MluCI AATT 4 cut(s) 381, 462, 788, 834
MmeI TCCRAC 1 cut(s) 607
MnlI CCTC 5 cut(s) 11, 147, 411, 558, 561
MroNI GCCGGC 1 cut(s) 31
MseI TTAA 2 cut(s) 461, 887
MspI CCGG 4 cut(s) 32, 146, 285, 701
MspR9I CCNGG 2 cut(s) 222, 815
MvaI CCWGG 2 cut(s) 222, 815
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 365, 517
NaeI GCCGGC 1 cut(s) 33
NdeII GATC 6 cut(s) 55, 65, 118, 236, 247, 330
NgoMIV GCCGGC 1 cut(s) 31
NheI GCTAGC 1 cut(s) 355
NlaIII CATG 3 cut(s) 192, 311, 775
NlaIV GGNNCC 3 cut(s) 238, 408, 409
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 1 cut(s) 775
PdiI GCCGGC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 185, 632
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 4 cut(s) 30, 144, 306, 322
PshBI ATTAAT 1 cut(s) 887
Psp124BI GAGCTC 1 cut(s) 802
Psp6I CCWGG 2 cut(s) 220, 813
PspGI CCWGG 2 cut(s) 220, 813
PspN4I GGNNCC 3 cut(s) 238, 408, 409
PspOMI GGGCCC 1 cut(s) 406
PspPI GGNCC 3 cut(s) 392, 406, 407
PsuI RGATCY 2 cut(s) 236, 247
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SacI GAGCTC 1 cut(s) 802
SaqAI TTAA 2 cut(s) 461, 887
SatI GCNGC 4 cut(s) 29, 143, 305, 321
Sau3AI GATC 6 cut(s) 55, 65, 118, 236, 247, 330
Sau96I GGNCC 3 cut(s) 392, 406, 407
ScrFI CCNGG 2 cut(s) 222, 815
SduI GDGCHC 4 cut(s) 75, 410, 539, 802
SetI ASST 9 cut(s) 22, 158, 223, 272, 302, 619, 692, 802, 860
SfaNI GCATC 1 cut(s) 40
Sse9I AATT 4 cut(s) 381, 462, 788, 834
SsiI CCGC 6 cut(s) 129, 304, 320, 323, 511, 841
SspMI CTAG 6 cut(s) 356, 426, 560, 572, 600, 762
SstI GAGCTC 1 cut(s) 802
StyD4I CCNGG 2 cut(s) 220, 813
TaaI ACNGT 2 cut(s) 505, 713
TaiI ACGT 2 cut(s) 619, 860
TaqI TCGA 2 cut(s) 329, 640
TasI AATT 4 cut(s) 381, 462, 788, 834
TauI GCSGC 2 cut(s) 307, 323
TfiI GAWTC 2 cut(s) 185, 632
Tru1I TTAA 2 cut(s) 461, 887
Tru9I TTAA 2 cut(s) 461, 887
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 2 cut(s) 28, 142
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 4 cut(s) 177, 626, 655, 873
TspRI CASTG 1 cut(s) 14
VneI GTGCAC 1 cut(s) 535
VspI ATTAAT 1 cut(s) 887
XagI CCTNNNNNAGG 1 cut(s) 415
XceI RCATGY 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 6 cut(s) 356, 426, 560, 572, 600, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.