RchiOBHm_Chr6g0295101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000267
Physical Location & Seq
Forward (+)
57201704 .. 57202264
561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26482

Sequence Viewer

Length: 381 bp
ATGTCACTAATAAGTCTCTACCACTATTTGTTAGGGTGTGGGCTCTGTCCCGGTCTGCACACTCAGTGTGCCTTGTCTGGCCTAGCAAGGCGGTTGTCTGTTATAAAATGGACGAATCCTCCTAGTGGCAGAATGAAACAAAAGGTCACCAGATATGATTCCATGAGGAAACATGGTAGGAAAGCTGTGTTATTTGTAATGATGCTTCTCAGTAGTAGAGTTATCTTTCCGTTATGTCATCGCTTTGTCAAAGTAAATAGAGTAACCAATCGAACACTCTTTGCTAATTGGTGCATGTTAGAATACATTACTTATTGTAATATGGGGTTCAGGCTCTATGTCCCCCCCCTGTATTCTATGGTTTCATTAATCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.58

Weight (kDa)

10.27

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AciI CCGC 1 cut(s) 91
AdeI CACNNNGTG 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 125
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 20
AoxI GGCC 1 cut(s) 79
AseI ATTAAT 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 139
BanII GRGCYC 1 cut(s) 45
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 83, 123
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 77, 223
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 2 cut(s) 33, 326
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 33, 326
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 1 cut(s) 91
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 76, 222
BstDEI CTNAG 2 cut(s) 63, 209
BstEII GGTNACC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 298
BstPI GGTNACC 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 49
BsuRI GGCC 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 71
CviAII CATG 3 cut(s) 163, 173, 295
CviJI RGCY 5 cut(s) 43, 81, 185, 334, 377
CviKI_1 RGCY 5 cut(s) 43, 81, 185, 334, 377
DdeI CTNAG 2 cut(s) 63, 209
DraIII CACNNNGTG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 45
Eco91I GGTNACC 1 cut(s) 145
EcoO65I GGTNACC 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 3 cut(s) 166, 176, 298
FaiI YATR 9 cut(s) 104, 156, 164, 174, 235, 296, 323, 339, 359
FaqI GGGAC 2 cut(s) 33, 326
FatI CATG 3 cut(s) 162, 172, 294
FriOI GRGCYC 1 cut(s) 45
FspBI CTAG 2 cut(s) 83, 123
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 51
Hin1II CATG 3 cut(s) 166, 176, 298
HinfI GANTC 2 cut(s) 115, 158
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 58, 294
HpyF3I CTNAG 2 cut(s) 63, 209
Hsp92II CATG 3 cut(s) 166, 176, 298
LpnPI CCDG 5 cut(s) 63, 64, 163, 316, 362
LweI GCATC 1 cut(s) 192
MaeI CTAG 2 cut(s) 83, 123
MaeIII GTNAC 3 cut(s) 3, 145, 262
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 286
MnlI CCTC 2 cut(s) 129, 159
MseI TTAA 1 cut(s) 368
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 51
NciI CCSGG 1 cut(s) 51
NlaIII CATG 3 cut(s) 166, 176, 298
NmuCI GTSAC 2 cut(s) 3, 145
NspI RCATGY 1 cut(s) 298
PfeI GAWTC 2 cut(s) 115, 158
PshBI ATTAAT 1 cut(s) 368
PsiI TTATAA 1 cut(s) 104
PspEI GGTNACC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 45
SetI ASST 2 cut(s) 147, 187
SfaNI GCATC 1 cut(s) 192
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 91
SspMI CTAG 2 cut(s) 83, 123
StyD4I CCNGG 1 cut(s) 49
TaqI TCGA 1 cut(s) 271
TasI AATT 1 cut(s) 286
TfiI GAWTC 2 cut(s) 115, 158
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 2 cut(s) 3, 145
Tsp45I GTSAC 2 cut(s) 3, 145
TspDTI ATGAA 2 cut(s) 149, 354
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 71
VspI ATTAAT 1 cut(s) 368
XceI RCATGY 1 cut(s) 298
XspI CTAG 2 cut(s) 83, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.