Rmu_sc0002310.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002310.1
OG0000267
Physical Location & Seq
Forward (+)
82595 .. 84467
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002310.1_g000018.1.cds

Sequence Viewer

Length: 411 bp
atgcctgtgcagtcggtctgggccgggttcaaggttctaaactttctagccctacttcaatggtgggcttattatgggcttggtggttcttgggcttgggggtttactcttgaacaatgtgggcttggtcccagtctttgcaccttctatgccttgtctactctaggtaggcggcgagttccttgcatttgcaaatggtcgcaacctcccagtggtagtaacgtgtctgctctaggtatcatgacgatggaggaagaggaggaggaggaggaggagaaacttcctcaatctaatttggagaagggaacacgtcccagtactctctataggaatcctccgtttaactctgcttcaacaccgagttcttcacatgttcttgattttcagcgtagaatctggtacccctcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.37

Weight (kDa)

5.82

Isoelectric Point (pI)

77.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 399
AccI GTMKAC 1 cut(s) 158
AciI CCGC 1 cut(s) 172
AfaI GTAC 2 cut(s) 319, 401
AfiI CCNNNNNNNGG 1 cut(s) 212
AflIII ACRYGT 3 cut(s) 222, 308, 370
AgsI TTSAA 4 cut(s) 31, 59, 113, 354
AjiI CACGTC 1 cut(s) 311
AoxI GGCC 1 cut(s) 21
Asp718I GGTACC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 21, 128
AsuC2I CCSGG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 399
BccI CCATC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 3 cut(s) 47, 164, 233
BfmI CTRYAG 1 cut(s) 325
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 21, 128
BmiI GGNNCC 2 cut(s) 130, 401
BmrFI CCNGG 1 cut(s) 25
BmrI ACTGGG 3 cut(s) 126, 204, 309
BmuI ACTGGG 3 cut(s) 126, 204, 309
BpuMI CCSGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 3 cut(s) 132, 210, 315
BseLI CCNNNNNNNGG 1 cut(s) 212
BseNI ACTGG 3 cut(s) 132, 210, 315
BseRI GAGGAG 6 cut(s) 272, 275, 278, 281, 284, 287
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 2 cut(s) 114, 297
BslI CCNNNNNNNGG 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 114, 297
BsnI GGCC 1 cut(s) 23
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 23
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 130, 401
BspT107I GGYRCC 1 cut(s) 399
BsrI ACTGG 3 cut(s) 132, 210, 315
Bst6I CTCTTC 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 325
BsuRI GGCC 1 cut(s) 23
BtrI CACGTC 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 217
CciI TCATGA 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 21, 128
Csp6I GTAC 2 cut(s) 318, 400
CviAII CATG 2 cut(s) 241, 371
CviJI RGCY 6 cut(s) 23, 50, 68, 79, 95, 124
CviKI_1 RGCY 6 cut(s) 23, 50, 68, 79, 95, 124
CviQI GTAC 2 cut(s) 318, 400
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 128
FaeI CATG 2 cut(s) 244, 374
FaiI YATR 5 cut(s) 75, 150, 242, 327, 372
FaqI GGGAC 2 cut(s) 114, 297
FatI CATG 2 cut(s) 240, 370
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 3 cut(s) 47, 164, 233
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 24
Hin1II CATG 2 cut(s) 244, 374
HinfI GANTC 2 cut(s) 331, 393
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 105, 159
Hpy188III TCNNGA 3 cut(s) 110, 241, 377
Hpy8I GTNNAC 2 cut(s) 105, 159
HpyAV CCTTC 2 cut(s) 154, 295
HpyCH4IV ACGT 2 cut(s) 222, 310
HpyCH4V TGCA 4 cut(s) 10, 141, 186, 192
HpySE526I ACGT 2 cut(s) 222, 310
Hsp92II CATG 2 cut(s) 244, 374
KpnI GGTACC 1 cut(s) 403
LpnPI CCDG 7 cut(s) 4, 18, 37, 145, 223, 328, 382
MaeI CTAG 3 cut(s) 47, 164, 233
MaeII ACGT 2 cut(s) 222, 310
MaeIII GTNAC 1 cut(s) 218
MboII GAAGA 2 cut(s) 266, 357
MluCI AATT 1 cut(s) 292
MseI TTAA 2 cut(s) 342, 409
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 25
NciI CCSGG 1 cut(s) 25
NlaIII CATG 2 cut(s) 244, 374
NlaIV GGNNCC 2 cut(s) 130, 401
NspI RCATGY 1 cut(s) 374
PagI TCATGA 1 cut(s) 240
PciI ACATGT 1 cut(s) 370
PfeI GAWTC 2 cut(s) 331, 393
PkrI GCNGC 1 cut(s) 174
PscI ACATGT 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 130, 401
PspPI GGNCC 2 cut(s) 21, 128
RsaI GTAC 2 cut(s) 319, 401
RsaNI GTAC 2 cut(s) 318, 400
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 342, 409
SatI GCNGC 1 cut(s) 173
Sau96I GGNCC 2 cut(s) 21, 128
ScaI AGTACT 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 25
SetI ASST 7 cut(s) 36, 146, 169, 208, 225, 238, 313
SfcI CTRYAG 1 cut(s) 325
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 1 cut(s) 292
SsiI CCGC 1 cut(s) 172
SspMI CTAG 3 cut(s) 47, 164, 233
StyD4I CCNGG 1 cut(s) 23
TaiI ACGT 2 cut(s) 225, 313
TaqII GACCGA 1 cut(s) 4
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 2 cut(s) 331, 393
Tru1I TTAA 2 cut(s) 342, 409
Tru9I TTAA 2 cut(s) 342, 409
TscAI CASTG 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 158
XspI CTAG 3 cut(s) 47, 164, 233
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.