RchiOBHm_Chr4g0405571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Forward (+)
26164289 .. 26165352
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37705

Sequence Viewer

Length: 504 bp
ATGAATGAGATTGAGGATGTTGATCGAGCATTAGCGTGGACTAAGACGAGATCTGTCCTAATCTTTTGGTTTTCAATGATAAGGATGCTGGTTGTCACCCATTGCAGGCATGGTGGAGGTGGTGGGAGAGTGATGCCGATCTGGTGGCGTTGGATTTGGAGGGTTTTGGACCTGGTGTATCAGCTGGGTTTTTGGGCTGGTTGGTGGGCTTGGGTCACATCATTGGGTTCTTGTTGGGCTATTTGTGTTTTAGCTTTGTTATGTTATGAGTTAATTTTAATTTTATTGTCAATTTTGATTATTATAATAAGTCCCTATCAAGTTATTGTATGGAGAGTTGGGCTGAATGTCTGTGTGTGCACTCAAAGTGCTTTGTCTGTCCTAGAGAAGTGGCGAGTCATTATCAAATGGGCGCAATCCCCTAGTGGCAGGATGAAACAAAGTGTCGCTGGAGGTTATTCTAGTCGACAGCATAATGGGAGAGCAGATTTAATTGTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

19.23

Weight (kDa)

9.58

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AccI GTMKAC 1 cut(s) 466
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 75
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 184, 254
AluI AGCT 2 cut(s) 184, 254
Alw21I GWGCWC 1 cut(s) 362
Alw44I GTGCAC 1 cut(s) 358
ApaLI GTGCAC 1 cut(s) 358
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 3 cut(s) 383, 423, 462
BglII AGATCT 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 75, 123
BpmI CTGGAG 1 cut(s) 471
BsaBI GATNNNNATC 2 cut(s) 21, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 2 cut(s) 21, 137
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 3 cut(s) 22, 90, 438
BseJI GATNNNNATC 2 cut(s) 21, 137
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 362
BseYI CCCAGC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 362
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 22, 50, 138
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 3 cut(s) 22, 50, 138
Bst2UI CCWGG 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 22, 90, 438
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 3 cut(s) 25, 53, 141
BstMBI GATC 3 cut(s) 22, 50, 138
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BtsCI GGATG 3 cut(s) 22, 90, 438
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 171
CviAII CATG 1 cut(s) 110
CviJI RGCY 6 cut(s) 184, 197, 209, 239, 254, 343
CviKI_1 RGCY 6 cut(s) 184, 197, 209, 239, 254, 343
DdeI CTNAG 1 cut(s) 42
DpnI GATC 3 cut(s) 24, 52, 140
DpnII GATC 3 cut(s) 22, 50, 138
Eco47I GGWCC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 113
FaiI YATR 7 cut(s) 111, 262, 267, 305, 331, 474, 502
FaqI GGGAC 1 cut(s) 297
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 466
FokI GGATG 3 cut(s) 29, 97, 445
FspBI CTAG 3 cut(s) 383, 423, 462
GlaI GCGC 1 cut(s) 414
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 471
HhaI GCGC 1 cut(s) 415
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HinfI GANTC 1 cut(s) 396
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 39, 360, 467
Hpy8I GTNNAC 3 cut(s) 39, 360, 467
HpyCH4V TGCA 2 cut(s) 105, 360
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 3 cut(s) 22, 50, 138
LpnPI CCDG 9 cut(s) 74, 91, 127, 158, 170, 183, 185, 415, 435
LweI GCATC 2 cut(s) 75, 123
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 3 cut(s) 383, 423, 462
MaeIII GTNAC 2 cut(s) 94, 214
MalI GATC 3 cut(s) 24, 52, 140
MboI GATC 3 cut(s) 22, 50, 138
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 4 cut(s) 273, 279, 291, 492
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 4 cut(s) 7, 110, 153, 446
MseI TTAA 3 cut(s) 272, 278, 491
MslI CAYNNNNRTG 1 cut(s) 34
MspA1I CMGCKG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
NdeII GATC 3 cut(s) 22, 50, 138
NlaIII CATG 1 cut(s) 113
NmuCI GTSAC 2 cut(s) 94, 214
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PsiI TTATAA 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 34
SalI GTCGAC 1 cut(s) 465
SaqAI TTAA 3 cut(s) 272, 278, 491
Sau3AI GATC 3 cut(s) 22, 50, 138
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 362
SetI ASST 5 cut(s) 121, 174, 186, 256, 457
SexAI ACCWGGT 1 cut(s) 171
SfaNI GCATC 2 cut(s) 75, 123
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 4 cut(s) 273, 279, 291, 492
SspMI CTAG 3 cut(s) 383, 423, 462
StyD4I CCNGG 1 cut(s) 171
TaqI TCGA 2 cut(s) 25, 466
TasI AATT 4 cut(s) 273, 279, 291, 492
Tru1I TTAA 3 cut(s) 272, 278, 491
Tru9I TTAA 3 cut(s) 272, 278, 491
TseFI GTSAC 2 cut(s) 94, 214
Tsp45I GTSAC 2 cut(s) 94, 214
TspDTI ATGAA 2 cut(s) 17, 449
VneI GTGCAC 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 3 cut(s) 383, 423, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.