Rw6G002520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000267
Physical Location & Seq
Forward (+)
4097369 .. 4100864
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002520.1

Sequence Viewer

Length: 378 bp
ATGCCCCGTTCGGCTGCGCTCCATGGGATGTCTACGTCGGTCGAGCAACTCGTCTCTCTGAATCCACTGGCAAGGTACAGCGGGCGGAGGATACGAGAAAGGCTGGAGCGGCGGAGGGATGTTGGTGTTCGGTGGGGAGGATCTCTGATTCTATGGTGGTGTATCGTCGTTGTTTCCCCTGTGGTGGGGTTGAAGAAAGATAATGGAGGCCGTGATCGATCATGTCTTGGGTCCGATTCCGGTTTGAGATCGGGACCTAAGAAGATCCGGTCGGCGAAGTCAGTTGGTGGCCAACTCCGACCCGCGTGGCAAATTGGATTATTATATAACTCAAAAGGCCTCAACTTTGGAGACTCTTTGAGAGGTGTTCAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.75

Weight (kDa)

11.42

Isoelectric Point (pI)

65.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 305
AciI CCGC 5 cut(s) 81, 85, 109, 112, 303
AclWI GGATC 2 cut(s) 148, 259
AcoI YGGCCR 1 cut(s) 289
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 184, 185
AgsI TTSAA 2 cut(s) 193, 371
Alw26I GTCTC 2 cut(s) 58, 345
AlwI GGATC 2 cut(s) 148, 259
AoxI GGCC 3 cut(s) 208, 289, 337
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 231, 254
AvaII GGWCC 2 cut(s) 231, 254
BalI TGGCCA 1 cut(s) 291
BceAI ACGGC 1 cut(s) 195
BciVI GTATCC 1 cut(s) 84
BcoDI GTCTC 2 cut(s) 58, 345
BfuI GTATCC 1 cut(s) 84
BisI GCNGC 2 cut(s) 15, 110
BlsI GCNGC 2 cut(s) 16, 111
Bme18I GGWCC 2 cut(s) 231, 254
BmgT120I GGNCC 2 cut(s) 231, 254
BmiI GGNNCC 2 cut(s) 232, 255
BpmI CTGGAG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 2 cut(s) 239, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 185
Bse1I ACTGG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 33, 124
BseLI CCNNNNNNNGG 2 cut(s) 184, 185
BseNI ACTGG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 305
Bsh1285I CGRYCG 2 cut(s) 42, 272
BshFI GGCC 3 cut(s) 210, 291, 339
BshVI ATCGAT 1 cut(s) 217
BsiEI CGRYCG 2 cut(s) 42, 272
BsiSI CCGG 2 cut(s) 240, 268
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 184, 185
BsmAI GTCTC 2 cut(s) 58, 345
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 3 cut(s) 210, 291, 339
Bsp143I GATC 5 cut(s) 140, 214, 218, 248, 264
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 5 cut(s) 81, 85, 109, 112, 303
BspANI GGCC 3 cut(s) 210, 291, 339
BspDI ATCGAT 1 cut(s) 217
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 232, 255
BspPI GGATC 2 cut(s) 148, 259
BsrBI CCGCTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 5 cut(s) 140, 214, 218, 248, 264
BssT1I CCWWGG 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 33, 124
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 5 cut(s) 143, 217, 221, 251, 267
BstMAI GTCTC 2 cut(s) 58, 345
BstMBI GATC 5 cut(s) 140, 214, 218, 248, 264
BstMCI CGRYCG 2 cut(s) 42, 272
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstUI CGCG 1 cut(s) 305
BstX2I RGATCY 2 cut(s) 140, 264
BstYI RGATCY 2 cut(s) 140, 264
Bsu15I ATCGAT 1 cut(s) 217
BsuI GTATCC 1 cut(s) 84
BsuRI GGCC 3 cut(s) 210, 291, 339
BsuTUI ATCGAT 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 2 cut(s) 33, 124
BtsIMutI CAGTG 2 cut(s) 65, 373
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 231, 254
ClaI ATCGAT 1 cut(s) 217
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 23, 222
CviJI RGCY 5 cut(s) 14, 103, 210, 291, 339
CviKI_1 RGCY 5 cut(s) 14, 103, 210, 291, 339
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 258
DpnI GATC 5 cut(s) 142, 216, 220, 250, 266
DpnII GATC 5 cut(s) 140, 214, 218, 248, 264
EaeI YGGCCR 1 cut(s) 289
EciI GGCGGA 2 cut(s) 100, 127
Eco130I CCWWGG 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 339
Eco47I GGWCC 2 cut(s) 231, 254
EcoO109I RGGNCCY 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 2 cut(s) 26, 225
FaiI YATR 5 cut(s) 24, 154, 223, 325, 327
FaqI GGGAC 1 cut(s) 267
FatI CATG 2 cut(s) 22, 221
FauI CCCGC 2 cut(s) 74, 310
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 15, 110
FokI GGATG 2 cut(s) 40, 131
Fsp4HI GCNGC 2 cut(s) 15, 110
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 15, 110
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 210, 291, 339
HapII CCGG 2 cut(s) 240, 268
HhaI GCGC 1 cut(s) 19
Hin1II CATG 2 cut(s) 26, 225
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 4 cut(s) 61, 148, 236, 353
HpaII CCGG 2 cut(s) 240, 268
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 60, 147, 235, 299
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 2 cut(s) 40, 170
HpyCH4IV ACGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 2 cut(s) 26, 225
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 5 cut(s) 140, 214, 218, 248, 264
LmnI GCTCC 2 cut(s) 24, 106
LpnPI CCDG 5 cut(s) 53, 89, 192, 253, 281
MaeII ACGT 1 cut(s) 35
MalI GATC 5 cut(s) 142, 216, 220, 250, 266
MbiI CCGCTC 1 cut(s) 109
MboI GATC 5 cut(s) 140, 214, 218, 248, 264
MboII GAAGA 2 cut(s) 205, 274
MflI RGATCY 2 cut(s) 140, 264
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 1 cut(s) 312
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 6 cut(s) 81, 108, 131, 200, 350, 356
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 2 cut(s) 240, 268
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 109
NcoI CCATGG 1 cut(s) 22
NdeII GATC 5 cut(s) 140, 214, 218, 248, 264
NlaIII CATG 2 cut(s) 26, 225
NlaIV GGNNCC 2 cut(s) 232, 255
PceI AGGCCT 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 3 cut(s) 61, 148, 236
PkrI GCNGC 2 cut(s) 16, 111
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 232, 255
PspPI GGNCC 2 cut(s) 231, 254
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 2 cut(s) 140, 264
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SatI GCNGC 2 cut(s) 15, 110
Sau3AI GATC 5 cut(s) 140, 214, 218, 248, 264
Sau96I GGNCC 2 cut(s) 231, 254
SchI GAGTC 1 cut(s) 347
SetI ASST 4 cut(s) 38, 77, 259, 367
SinI GGWCC 2 cut(s) 231, 254
Sse9I AATT 1 cut(s) 312
SseBI AGGCCT 1 cut(s) 339
SsiI CCGC 5 cut(s) 81, 85, 109, 112, 303
StuI AGGCCT 1 cut(s) 339
StyI CCWWGG 1 cut(s) 22
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 42, 217
TaqII GACCGA 1 cut(s) 28
TasI AATT 1 cut(s) 312
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 3 cut(s) 61, 148, 236
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 14
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 231, 254
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.