RchiOBHm_Chr7g0215471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000267
Physical Location & Seq
Forward (+)
33104448 .. 33105016
569 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19279

Sequence Viewer

Length: 420 bp
ATGCTGCGGTATGTTGGCTGCGTGGTTAGCTGTCGGCGTTGGAGCCTTGGATGCTGTGGAGATGGTAGGAGGCGAGTTCCTTACACTTGCAAATGGTCGCTGCCTCTTAGTAGCAGAGTGAAATTAAGTGTCACTGGATGTAGTGTCCGGGGGCATCATGATGGGAAAGTTGTGCGTATGGAAGTTATGCTTTGCTGTAGTCTGGTTGTAGTCCAAGTTATCTTGCTGTTGTGTCACCGCTGCGTTAAAGCAGTTAAAGCAAATAGAGTCGCCATTTGTGCGCTCTTTGCTAGTTGGTGTTTTGTTGAGTACAAACGTTTAGTAGAGACTCAGGATAGTATTTCAGGAGGTTCTACTTATTGTAATCAGGGGTGTAGGCTCAATGTCCCCCCCCCCCCATGTATTCGACAGTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.54

Weight (kDa)

9.42

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 7, 238
AclI AACGTT 1 cut(s) 316
AfaI GTAC 1 cut(s) 311
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 320
ApeKI GCWGC 4 cut(s) 4, 18, 100, 240
AspLEI GCGC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 227
BbvI GCAGC 3 cut(s) 5, 87, 227
BccI CCATC 2 cut(s) 56, 155
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 4 cut(s) 5, 19, 101, 241
BlsI GCNGC 4 cut(s) 6, 20, 102, 242
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 41, 163
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 46, 148
Bse1I ACTGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 46, 148
BseGI GGATG 2 cut(s) 56, 143
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 3 cut(s) 5, 87, 227
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 371
BspACI CCGC 2 cut(s) 7, 238
BspCNI CTCAG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 46, 148
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 107, 330
BstF5I GGATG 2 cut(s) 56, 143
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 320
BstMWI GCNNNNNNNGC 5 cut(s) 27, 51, 257, 278, 287
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 3 cut(s) 5, 87, 227
BtsCI GGATG 2 cut(s) 56, 143
BtsIMutI CAGTG 1 cut(s) 132
CciI TCATGA 1 cut(s) 157
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 158, 399
CviJI RGCY 4 cut(s) 18, 30, 45, 379
CviKI_1 RGCY 4 cut(s) 18, 30, 45, 379
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 107, 330
Eco130I CCWWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 161, 402
FaiI YATR 5 cut(s) 12, 159, 179, 188, 400
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 157, 398
Fnu4HI GCNGC 4 cut(s) 5, 19, 101, 241
FokI GGATG 2 cut(s) 63, 150
Fsp4HI GCNGC 4 cut(s) 5, 19, 101, 241
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 282
GluI GCNGC 4 cut(s) 5, 19, 101, 241
HapII CCGG 1 cut(s) 148
HhaI GCGC 1 cut(s) 283
Hin1II CATG 2 cut(s) 161, 402
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 2 cut(s) 267, 328
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 227
Hpy188III TCNNGA 3 cut(s) 158, 332, 345
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 51, 257, 278, 287
HpyF3I CTNAG 2 cut(s) 107, 330
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 2 cut(s) 161, 402
HspAI GCGC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 6 cut(s) 120, 161, 188, 317, 330, 353
Lsp1109I GCAGC 3 cut(s) 5, 87, 227
LweI GCATC 2 cut(s) 41, 163
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 2 cut(s) 130, 233
MluCI AATT 1 cut(s) 122
MlyI GAGTC 2 cut(s) 276, 322
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 3 cut(s) 63, 114, 341
MseI TTAA 4 cut(s) 125, 246, 255, 418
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 149
MwoI GCNNNNNNNGC 5 cut(s) 27, 51, 257, 278, 287
NciI CCSGG 1 cut(s) 149
NlaIII CATG 2 cut(s) 161, 402
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 130, 233
PagI TCATGA 1 cut(s) 157
PkrI GCNGC 4 cut(s) 6, 20, 102, 242
PleI GAGTC 2 cut(s) 275, 322
PpsI GAGTC 2 cut(s) 275, 322
Psp1406I AACGTT 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 44
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 4 cut(s) 125, 246, 255, 418
SatI GCNGC 4 cut(s) 5, 19, 101, 241
SchI GAGTC 2 cut(s) 276, 322
ScrFI CCNGG 1 cut(s) 149
SetI ASST 3 cut(s) 32, 319, 352
SfaNI GCATC 2 cut(s) 41, 163
SfcI CTRYAG 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 1 cut(s) 122
SsiI CCGC 2 cut(s) 7, 238
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 406
TasI AATT 1 cut(s) 122
TatI WGTACW 1 cut(s) 309
Tru1I TTAA 4 cut(s) 125, 246, 255, 418
Tru9I TTAA 4 cut(s) 125, 246, 255, 418
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 130, 233
TseI GCWGC 4 cut(s) 4, 18, 100, 240
Tsp45I GTSAC 2 cut(s) 130, 233
TspRI CASTG 1 cut(s) 139
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.