Rh1AG070300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000267
Physical Location & Seq
Forward (+)
11824413 .. 11825653
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG070300.1

Sequence Viewer

Length: 324 bp
ATGGTTCGAGGTTTCTCCGGAGGGGTCGATCTACATAGGCAGTGGTTTGGAGGTGTTGGGATGCCGGCAACGACAACGGTTGATGTAGATCTCTTTGGATCCAGGCTCGACTCTCCATGGAGTGTTCGCACGGCCCGTTGGTTGGTAGCTGATCACTGGCGCGTGGGTTCGTGGCCGCCGATATGGCAGTCTACTGCAACGTTCTCTCTCGTTGTGACAAGGGATTCAAGGAGTTCTGTTGCAAGATCGACATATATTCCTGTGGTACAATCTGGATCCGCTTTAGATCTGGTGTGCTTCGTGGTCAAGTCGTCGTCGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.72

Weight (kDa)

10.0

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AccII CGCG 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 2 cut(s) 176, 279
AclI AACGTT 1 cut(s) 200
AclWI GGATC 4 cut(s) 93, 106, 270, 283
AcoI YGGCCR 1 cut(s) 173
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 228
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 4 cut(s) 93, 106, 270, 283
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 2 cut(s) 132, 173
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 133
BamHI GGATCC 2 cut(s) 98, 275
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 103
BclI TGATCA 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 184
BglII AGATCT 2 cut(s) 88, 286
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 100, 277
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 134, 175
BsiSI CCGG 2 cut(s) 18, 65
BslI CCNNNNNNNGG 1 cut(s) 142
BsnI GGCC 2 cut(s) 134, 175
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 2 cut(s) 176, 279
BspANI GGCC 2 cut(s) 134, 175
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 100, 277
BspPI GGATC 4 cut(s) 93, 106, 270, 283
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 7 cut(s) 31, 91, 101, 154, 248, 278, 289
BstMBI GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstUI CGCG 1 cut(s) 162
BstX2I RGATCY 4 cut(s) 88, 98, 275, 286
BstYI RGATCY 4 cut(s) 88, 98, 275, 286
BsuRI GGCC 2 cut(s) 134, 175
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 47, 154
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 266
CviAII CATG 1 cut(s) 117
CviJI RGCY 4 cut(s) 106, 134, 149, 175
CviKI_1 RGCY 4 cut(s) 106, 134, 149, 175
CviQI GTAC 1 cut(s) 266
DpnI GATC 7 cut(s) 30, 90, 100, 153, 247, 277, 288
DpnII GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
EaeI YGGCCR 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 120
FaiI YATR 5 cut(s) 36, 118, 184, 253, 255
FatI CATG 1 cut(s) 116
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 176
GlaI GCGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 2 cut(s) 134, 175
HapII CCGG 2 cut(s) 18, 65
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 120
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 110, 224
HpaII CCGG 2 cut(s) 18, 65
Hpy166II GTNNAC 1 cut(s) 192
Hpy188III TCNNGA 3 cut(s) 18, 273, 321
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 3 cut(s) 316, 319, 322
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 197, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 1 cut(s) 120
HspAI GCGC 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 17
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
LpnPI CCDG 8 cut(s) 31, 78, 88, 115, 142, 258, 273, 275
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 214
MalI GATC 7 cut(s) 30, 90, 100, 153, 247, 277, 288
MboI GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
MflI RGATCY 4 cut(s) 88, 98, 275, 286
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 14, 44
MroI TCCGGA 1 cut(s) 17
MroNI GCCGGC 1 cut(s) 64
MspI CCGG 2 cut(s) 18, 65
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 184
NaeI GCCGGC 1 cut(s) 66
NcoI CCATGG 1 cut(s) 116
NdeII GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 2 cut(s) 100, 277
NmuCI GTSAC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 3 cut(s) 133, 176, 317
PdiI GCCGGC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp1406I AACGTT 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 100, 277
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 4 cut(s) 88, 98, 275, 286
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 7 cut(s) 28, 88, 98, 151, 245, 275, 286
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 103
SetI ASST 4 cut(s) 13, 55, 151, 203
SfaNI GCATC 1 cut(s) 51
SsiI CCGC 2 cut(s) 176, 279
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 203
TaqI TCGA 4 cut(s) 7, 27, 108, 248
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 2 cut(s) 47, 161
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspRI CASTG 2 cut(s) 47, 161
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.