Rroxscaffold_4G00279230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000267
Physical Location & Seq
Forward (+)
2077615 .. 2078146
532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279230.1

Sequence Viewer

Length: 480 bp
ATGGGGAGAGGGCCGGTGTTTGCTCGGAGCGGCGGGGATACCGCTGCTGGAGTGACAGCGGGGACTCTCTGTGAGCGGCGGCATAGTGACACGGGCGGTCTTCATGCGGGACTGGGGCGTGAAGATTTTTGGGCTTGGGCTTGGGCTCACGTCCCAAAGTCTATGGCTTTCGCCGGCAATAAATTCCTATCTCTTGTGGATAGGGCAAAGTGGGCTTGGTCCCGTATGCACACTCGGTTTGTCTTGTACGGCCTAGCGAGTCGGCAAGCCATTTCTTGGATCGAATGGACGCAACCTCCTAGTGACGGGATGAAATTAAGTGTCGTCGGATTTGTTTCCGTGTGGCAACATAGTGGCAAAGCTATGCTATTTGTAATGATGCTTCTTCATGATAGAATTATCTTTCTAGTATGTCACCGCTATGTCAAAGCAAATAGAGTAGTCATTCGTGCACTCTTTGCTAATTGGTGCTTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.88

Weight (kDa)

10.42

Isoelectric Point (pI)

24.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 276
AccBSI CCGCTC 2 cut(s) 30, 76
AciI CCGC 9 cut(s) 30, 33, 42, 59, 76, 79, 96, 107, 418
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 276, 305
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 454
Alw44I GTGCAC 1 cut(s) 450
AlwI GGATC 1 cut(s) 287
AoxI GGCC 2 cut(s) 11, 250
ApaLI GTGCAC 1 cut(s) 450
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 11, 219
AsuHPI GGTGA 1 cut(s) 407
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 148
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 31
BfaI CTAG 3 cut(s) 254, 300, 407
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 4 cut(s) 31, 45, 77, 80
BlsI GCNGC 4 cut(s) 32, 46, 78, 81
Bme18I GGWCC 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 11, 219
BmiI GGNNCC 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 305
Bse118I RCCGGY 2 cut(s) 13, 173
Bse1I ACTGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 276, 305
BseNI ACTGG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 13, 252
BsiHKAI GWGCWC 1 cut(s) 454
BsiSI CCGG 2 cut(s) 14, 174
BslFI GGGAC 4 cut(s) 76, 123, 137, 205
BslI CCNNNNNNNGG 2 cut(s) 276, 305
BsmFI GGGAC 4 cut(s) 76, 123, 137, 205
BsnI GGCC 2 cut(s) 13, 252
Bsp1286I GDGCHC 2 cut(s) 148, 454
Bsp143I GATC 1 cut(s) 279
BspACI CCGC 9 cut(s) 30, 33, 42, 59, 76, 79, 96, 107, 418
BspANI GGCC 2 cut(s) 13, 252
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 287
BsrBI CCGCTC 2 cut(s) 30, 76
BsrFI RCCGGY 2 cut(s) 13, 173
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 2 cut(s) 13, 173
BssMI GATC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 175, 267
BstF5I GGATG 1 cut(s) 315
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 212, 458
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 92
BsuI GTATCC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 13, 252
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 175, 267
CciI TCATGA 1 cut(s) 388
Cfr10I RCCGGY 2 cut(s) 13, 173
Cfr13I GGNCC 2 cut(s) 11, 219
CseI GACGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 104, 389
CviJI RGCY 9 cut(s) 13, 134, 140, 146, 167, 215, 252, 269, 362
CviKI_1 RGCY 9 cut(s) 13, 134, 140, 146, 167, 215, 252, 269, 362
CviQI GTAC 1 cut(s) 247
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 2 cut(s) 107, 392
FaqI GGGAC 4 cut(s) 76, 123, 137, 205
FatI CATG 2 cut(s) 103, 388
FauI CCCGC 3 cut(s) 26, 52, 100
Fnu4HI GCNGC 4 cut(s) 31, 45, 77, 80
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 4 cut(s) 31, 45, 77, 80
FspBI CTAG 3 cut(s) 254, 300, 407
GluI GCNGC 4 cut(s) 31, 45, 77, 80
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 2 cut(s) 13, 252
HapII CCGG 2 cut(s) 14, 174
HgaI GACGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 107, 392
HinfI GANTC 2 cut(s) 64, 259
HpaII CCGG 2 cut(s) 14, 174
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 2 cut(s) 27, 329
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 452
Hpy99I CGWCG 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 229, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 458
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 107, 392
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 4 cut(s) 27, 33, 98, 187
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 369
MaeI CTAG 3 cut(s) 254, 300, 407
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 52, 86, 302, 413
MalI GATC 1 cut(s) 281
MbiI CCGCTC 2 cut(s) 30, 76
MboI GATC 1 cut(s) 279
MboII GAAGA 3 cut(s) 92, 134, 377
MhlI GDGCHC 2 cut(s) 148, 454
MluCI AATT 4 cut(s) 182, 314, 396, 463
MlyI GAGTC 2 cut(s) 58, 268
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 1 cut(s) 306
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 2 cut(s) 44, 59
MspI CCGG 2 cut(s) 14, 174
MwoI GCNNNNNNNGC 2 cut(s) 212, 458
NaeI GCCGGC 1 cut(s) 175
NdeII GATC 1 cut(s) 279
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 107, 392
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 4 cut(s) 52, 86, 302, 413
PagI TCATGA 1 cut(s) 388
PdiI GCCGGC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 4 cut(s) 32, 46, 78, 81
PleI GAGTC 2 cut(s) 58, 267
PpsI GAGTC 2 cut(s) 58, 267
PsiI TTATAA 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 2 cut(s) 11, 219
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 4 cut(s) 31, 45, 77, 80
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 2 cut(s) 11, 219
SchI GAGTC 2 cut(s) 58, 268
SduI GDGCHC 2 cut(s) 148, 454
SetI ASST 3 cut(s) 153, 298, 364
SfaNI GCATC 1 cut(s) 369
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 420
Sse9I AATT 4 cut(s) 182, 314, 396, 463
SsiI CCGC 9 cut(s) 30, 33, 42, 59, 76, 79, 96, 107, 418
SspMI CTAG 3 cut(s) 254, 300, 407
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 282
TasI AATT 4 cut(s) 182, 314, 396, 463
TauI GCSGC 3 cut(s) 33, 79, 82
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseFI GTSAC 4 cut(s) 52, 86, 302, 413
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 4 cut(s) 52, 86, 302, 413
TspDTI ATGAA 3 cut(s) 92, 326, 377
TspGWI ACGGA 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 276
VneI GTGCAC 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 1 cut(s) 182
XspI CTAG 3 cut(s) 254, 300, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.