RchiOBHm_Chr7g0204591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000267
Physical Location & Seq
Forward (+)
22254861 .. 22255517
657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18312

Sequence Viewer

Length: 615 bp
ATGTTGCCTTGGGCTTGGAGGGTTGATGCCCTTGCTAATTTGGGCTTCTGGGCTTGGATGTTGCCTTTGGGCCCATTCAGAGTTGGAGGTTGGGTTTGGGCTCATTTCTTGGGCCCTACCCTAGTTGTTATTTTCTTTTTAGTTGGTATTTATTTATGTTGTTTAGTTTGGTTGCACATTTTGCGAGTAATAAGTCCCTACCCTTGTTCTGTAGGGCTAGTCAGGCTATGTGCATGTGTGTGCACGCAGTGCACGCAAAGTGCCTTGTCTGCTCTAGGTAGACAGCGAGTTCCTTGCTTTGTCAAATGGTCGCTACCTCTTAGTGACAGGGTGAGACCAAGTGTCATCGGATTTATCCTCCGACAACAACATAGTAGGAAAGCTGTGCATATGGTAATTATGCTACGTTGTAATCGAGTTACATATCGAGTTATCTTTCCATTATGTCACCGCTATGTCAAAGCAAATAGAGTTGTCAATAGAGCGTTTTTTGCTAGTTGGTGTCTTGTTCAATACATTTATTTGGTAGAGACTCATGATAGTATTTCAGGACATTCTCTAGATGCTTATTGTAATCAGGGGTTTAGGTTCAATGTCCTCCCCCCTTGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.46

Weight (kDa)

9.67

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 280
AciI CCGC 1 cut(s) 451
AdeI CACNNNGTG 1 cut(s) 249
AgsI TTSAA 2 cut(s) 512, 592
AhdI GACNNNNNGTC 1 cut(s) 341
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw21I GWGCWC 2 cut(s) 245, 254
Alw26I GTCTC 2 cut(s) 328, 524
Alw44I GTGCAC 2 cut(s) 241, 250
AoxI GGCC 2 cut(s) 70, 112
ApaI GGGCCC 2 cut(s) 74, 116
ApaLI GTGCAC 2 cut(s) 241, 250
AspS9I GGNCC 4 cut(s) 70, 71, 112, 113
AsuHPI GGTGA 2 cut(s) 343, 440
BaeGI GKGCMC 4 cut(s) 74, 116, 245, 254
BanII GRGCYC 3 cut(s) 74, 103, 116
Bbv12I GWGCWC 2 cut(s) 245, 254
BcgI CGANNNNNNTGC 2 cut(s) 276, 310
BcoDI GTCTC 2 cut(s) 328, 524
BfaI CTAG 5 cut(s) 122, 218, 275, 495, 560
BfmI CTRYAG 1 cut(s) 210
BmeRI GACNNNNNGTC 1 cut(s) 341
BmgT120I GGNCC 4 cut(s) 70, 71, 112, 113
BmiI GGNNCC 2 cut(s) 72, 114
BmsI GCATC 2 cut(s) 16, 553
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 63
BseSI GKGCMC 4 cut(s) 74, 116, 245, 254
BshFI GGCC 2 cut(s) 72, 114
BsiHKAI GWGCWC 2 cut(s) 245, 254
BslFI GGGAC 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 328, 524
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 2 cut(s) 72, 114
Bso31I GGTCTC 1 cut(s) 328
Bsp120I GGGCCC 2 cut(s) 70, 112
Bsp1286I GDGCHC 5 cut(s) 74, 103, 116, 245, 254
BspACI CCGC 1 cut(s) 451
BspANI GGCC 2 cut(s) 72, 114
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 72, 114
BspTNI GGTCTC 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 8
BstAPI GCANNNNNTGC 2 cut(s) 181, 249
BstC8I GCNNGC 2 cut(s) 245, 254
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 328, 524
BstMWI GCNNNNNNNGC 6 cut(s) 181, 223, 249, 253, 269, 491
BstNSI RCATGY 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 4 cut(s) 74, 116, 245, 254
BsuRI GGCC 2 cut(s) 72, 114
BtsCI GGATG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 245, 254
CciI TCATGA 1 cut(s) 535
Cfr13I GGNCC 4 cut(s) 70, 71, 112, 113
CviAII CATG 2 cut(s) 234, 536
CviJI RGCY 9 cut(s) 14, 45, 53, 72, 101, 114, 217, 226, 383
CviKI_1 RGCY 9 cut(s) 14, 45, 53, 72, 101, 114, 217, 226, 383
DdeI CTNAG 1 cut(s) 320
DraIII CACNNNGTG 1 cut(s) 249
DriI GACNNNNNGTC 1 cut(s) 341
Eam1105I GACNNNNNGTC 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 8
Eco24I GRGCYC 3 cut(s) 74, 103, 116
Eco31I GGTCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 8
EcoT38I GRGCYC 3 cut(s) 74, 103, 116
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 237, 539
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 233, 535
FauNDI CATATG 1 cut(s) 390
FblI GTMKAC 1 cut(s) 280
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 3 cut(s) 74, 103, 116
FspBI CTAG 5 cut(s) 122, 218, 275, 495, 560
HaeIII GGCC 2 cut(s) 72, 114
Hin1II CATG 2 cut(s) 237, 539
HinfI GANTC 1 cut(s) 532
HphI GGTGA 2 cut(s) 343, 440
Hpy166II GTNNAC 3 cut(s) 243, 252, 281
Hpy188I TCNGA 3 cut(s) 80, 350, 362
Hpy188III TCNNGA 3 cut(s) 536, 549, 560
Hpy8I GTNNAC 3 cut(s) 243, 252, 281
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 5 cut(s) 175, 233, 243, 252, 388
HpyF10VI GCNNNNNNNGC 6 cut(s) 181, 223, 249, 253, 269, 491
HpyF3I CTNAG 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 2 cut(s) 237, 539
LpnPI CCDG 5 cut(s) 34, 208, 313, 534, 563
LweI GCATC 2 cut(s) 16, 553
MaeI CTAG 5 cut(s) 122, 218, 275, 495, 560
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 3 cut(s) 323, 418, 446
MhlI GDGCHC 5 cut(s) 74, 103, 116, 245, 254
MluCI AATT 2 cut(s) 37, 396
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 2 cut(s) 64, 385
MnlI CCTC 5 cut(s) 12, 80, 327, 368, 608
MslI CAYNNNNRTG 2 cut(s) 238, 453
MwoI GCNNNNNNNGC 6 cut(s) 181, 223, 249, 253, 269, 491
NdeI CATATG 1 cut(s) 390
NlaIII CATG 2 cut(s) 237, 539
NlaIV GGNNCC 2 cut(s) 72, 114
NmuCI GTSAC 2 cut(s) 323, 446
NspI RCATGY 1 cut(s) 237
PagI TCATGA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 72, 114
PspOMI GGGCCC 2 cut(s) 70, 112
PspPI GGNCC 4 cut(s) 70, 71, 112, 113
RseI CAYNNNNRTG 2 cut(s) 238, 453
Sau96I GGNCC 4 cut(s) 70, 71, 112, 113
SchI GAGTC 1 cut(s) 526
SduI GDGCHC 5 cut(s) 74, 103, 116, 245, 254
SetI ASST 6 cut(s) 91, 280, 319, 385, 409, 590
SfaNI GCATC 2 cut(s) 16, 553
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 238, 453
Sse9I AATT 2 cut(s) 37, 396
SsiI CCGC 1 cut(s) 451
SspMI CTAG 5 cut(s) 122, 218, 275, 495, 560
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 415, 427
TasI AATT 2 cut(s) 37, 396
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 2 cut(s) 323, 446
Tsp45I GTSAC 2 cut(s) 323, 446
TspRI CASTG 1 cut(s) 254
VneI GTGCAC 2 cut(s) 241, 250
XbaI TCTAGA 1 cut(s) 559
XceI RCATGY 1 cut(s) 237
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 5 cut(s) 122, 218, 275, 495, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.