Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000267

Physical Location & Seq

Genomic Coordinates Forward (+)

58973046 .. 58974906

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0458000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGACAAGGCCAAGAAGTATTCAAGACCAAAACTGAGGATGTCCAAGTTGAAATCCAGGAGAGGGGGGAAATATTCTTCTTTTACAGGCCAAAGGTGAACAAAGAAGAGGCTCACAGTCCAGACGATGTGCAACGTTTGTACATAGTTTTGAGGCCAGAGTCTGGTGAGAGATCAATCGAAGAGAAGCAAGACCCAGATTCAGGAAAGGAAGGGGCAAAGAGGAAGGGGTCAGATTCTGGGGATGAAGGAGGTTCTGGTGGTAGTGAAAGTGAAGGTGGACATGGGAAGCAGGAGGTGAACATTGAGAAGCAACCATTGCTGAGGTTCATAGTGATGGGAAGGAAAAGCCTTCCTGATCCAAGCAAGAAGAGTAGACCTTATTGGGGCTTTGTGGAGCTGGTCACCACAAATATAGATGATGTCAAGTCTTCCCTGCAAGGAGAGGAGCATGATACTAAAACCAGAGGACACAGACATACATCAGCAGCAAGGGCACTTGGAGAAGGCATTTATCGCATTCTAAGGCATAAAGAGGGAAAGAAGAAACCCCACACTCATTTGATCTACAAGCTTGAGTTTCCACCTGAAGACGAGTGCAATCAGCCTCAGGAGTCACTAAACATTAAGCATGAAGGCTCATTTCATATTCAAATAAAGAACCCAGAGCAACATGGCAGCAGTACTTCACAGTACAGAGGGATGCAGAGCAAGCGCAGGGCAGTGTTTCCTGCTCACTTACAAGGCCAATTCGGGAAGCTACGGTTCCACCCGGCTGATCCACCCGACTTTTTGAACTACGAAGGTTGTGAATTCTTGCTCATATCGGCTTCGGATCATATAGAAGAGGAGTTGGGGTTAGAGCTTCAATCTGAGAAGGTGGAAGCTGATGAATCGTGTTCTGATTTGATCAAGACTTTTGGGGAGACTGCATCTACTACTCCTCTTCTGAAAGGCACTTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

322

Amino Acids

36.32

Weight (kDa)

5.82

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis	RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata	RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora	Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa	Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha	Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana	Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	376
AclI	AACGTT	1 cut(s)	136
AclWI	GGATC	3 cut(s)	353, 773, 843
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	3 cut(s)	143, 685, 695
AfiI	CCNNNNNNNGG	4 cut(s)	64, 164, 203, 386
AgsI	TTSAA	5 cut(s)	25, 53, 653, 796, 869
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	400, 574, 760, 865, 887
AluI	AGCT	5 cut(s)	400, 574, 760, 865, 887
Alw26I	GTCTC	1 cut(s)	920
AlwI	GGATC	3 cut(s)	353, 773, 843
AlwNI	CAGNNNCTG	2 cut(s)	164, 239
AoxI	GGCC	4 cut(s)	10, 89, 155, 745
ApeKI	GCWGC	2 cut(s)	488, 678
ApoI	RAATTY	1 cut(s)	812
AspLEI	GCGC	1 cut(s)	717
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	4 cut(s)	109, 179, 310, 397
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	499
BbsI	GAAGAC	2 cut(s)	423, 597
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	500, 690
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	1 cut(s)	909
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	1 cut(s)	920
BisI	GCNGC	2 cut(s)	489, 679
BlsI	GCNGC	2 cut(s)	490, 680
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	59, 773
BmiI	GGNNCC	1 cut(s)	767
BmrFI	CCNGG	2 cut(s)	59, 773
BmsI	GCATC	2 cut(s)	693, 941
BpiI	GAAGAC	2 cut(s)	423, 597
Bpu10I	CCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	773
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 164, 203, 386
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	59
BseGI	GGATG	3 cut(s)	46, 250, 708
BseLI	CCNNNNNNNGG	4 cut(s)	64, 164, 203, 386
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	4 cut(s)	27, 314, 623, 864
BseRI	GAGGAG	3 cut(s)	461, 863, 933
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	500, 690
BshFI	GGCC	4 cut(s)	12, 91, 157, 747
BsiSI	CCGG	1 cut(s)	773
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	4 cut(s)	64, 164, 203, 386
BsmAI	GTCTC	1 cut(s)	920
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	12, 91, 157, 747
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
BspANI	GGCC	4 cut(s)	12, 91, 157, 747
BspCNI	CTCAG	4 cut(s)	28, 315, 622, 865
BspLI	GGNNCC	1 cut(s)	767
BspPI	GGATC	3 cut(s)	353, 773, 843
BsrDI	GCAATG	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	141
BssMI	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	119, 693, 765
Bst6I	CTCTTC	5 cut(s)	102, 177, 365, 840, 951
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	713
BstDEI	CTNAG	5 cut(s)	36, 323, 524, 609, 873
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	3 cut(s)	46, 250, 708
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	6 cut(s)	176, 361, 567, 781, 838, 912
BstMAI	GTCTC	1 cut(s)	920
BstMBI	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
BstMWI	GCNNNNNNNGC	4 cut(s)	319, 494, 516, 712
BstNI	CCWGG	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	57, 771
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	500, 690
BstV2I	GAAGAC	2 cut(s)	423, 597
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	4 cut(s)	12, 91, 157, 747
BtsCI	GGATG	3 cut(s)	46, 250, 708
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	713
CaiI	CAGNNNCTG	2 cut(s)	164, 239
CfoI	GCGC	1 cut(s)	717
Csp6I	GTAC	3 cut(s)	142, 684, 694
CviAII	CATG	4 cut(s)	284, 452, 632, 674
CviQI	GTAC	3 cut(s)	142, 684, 694
DdeI	CTNAG	5 cut(s)	36, 323, 524, 609, 873
DpnI	GATC	6 cut(s)	175, 360, 566, 780, 837, 911
DpnII	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
Eam1104I	CTCTTC	5 cut(s)	102, 177, 365, 840, 951
EarI	CTCTTC	5 cut(s)	102, 177, 365, 840, 951
Eco57I	CTGAAG	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoRI	GAATTC	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	287, 455, 635, 677
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	283, 451, 631, 673
FbaI	TGATCA	1 cut(s)	909
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	489, 679
FokI	GGATG	3 cut(s)	53, 257, 715
Fsp4HI	GCNGC	2 cut(s)	489, 679
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	2 cut(s)	489, 679
HaeIII	GGCC	4 cut(s)	12, 91, 157, 747
HapII	CCGG	1 cut(s)	773
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	4 cut(s)	287, 455, 635, 677
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	5 cut(s)	161, 200, 236, 614, 893
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	4 cut(s)	109, 179, 310, 397
Hpy166II	GTNNAC	4 cut(s)	100, 281, 301, 377
Hpy188I	TCNGA	5 cut(s)	235, 835, 874, 904, 951
Hpy188III	TCNNGA	7 cut(s)	25, 122, 204, 356, 611, 754, 913
Hpy8I	GTNNAC	4 cut(s)	100, 281, 301, 377
HpyCH4III	ACNGT	3 cut(s)	119, 693, 765
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	133, 439, 600, 706, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	319, 494, 516, 712
HpyF3I	CTNAG	5 cut(s)	36, 323, 524, 609, 873
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	287, 455, 635, 677
HspAI	GCGC	1 cut(s)	715
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
LmnI	GCTCC	2 cut(s)	397, 448
Lsp1109I	GCAGC	2 cut(s)	500, 690
LweI	GCATC	2 cut(s)	693, 941
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	403, 615
MalI	GATC	6 cut(s)	175, 360, 566, 780, 837, 911
MboI	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
MboII	GAAGA	9 cut(s)	70, 119, 194, 382, 423, 556, 602, 857, 938
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	2 cut(s)	749, 812
MlyI	GAGTC	2 cut(s)	170, 623
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	2 cut(s)	59, 773
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	4 cut(s)	319, 494, 516, 712
NciI	CCSGG	1 cut(s)	773
NdeII	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
NlaIII	CATG	4 cut(s)	287, 455, 635, 677
NlaIV	GGNNCC	1 cut(s)	767
NmuCI	GTSAC	2 cut(s)	403, 615
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	200, 236, 893
PflMI	CCANNNNNTGG	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	490, 680
PleI	GAGTC	2 cut(s)	169, 622
PpsI	GAGTC	2 cut(s)	169, 622
Psp1406I	AACGTT	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	767
PstNI	CAGNNNCTG	2 cut(s)	164, 239
RsaI	GTAC	3 cut(s)	143, 685, 695
RsaNI	GTAC	3 cut(s)	142, 684, 694
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	2 cut(s)	489, 679
Sau3AI	GATC	6 cut(s)	173, 358, 564, 778, 835, 909
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	2 cut(s)	170, 623
ScrFI	CCNGG	2 cut(s)	59, 773
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	2 cut(s)	693, 941
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	2 cut(s)	749, 812
SspI	AATATT	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	57, 771
TaaI	ACNGT	3 cut(s)	119, 693, 765
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	749, 812
TatI	WGTACW	3 cut(s)	141, 683, 693
TfiI	GAWTC	3 cut(s)	200, 236, 893
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	2 cut(s)	403, 615
TseI	GCWGC	2 cut(s)	488, 678
Tsp45I	GTSAC	2 cut(s)	403, 615
TspDTI	ATGAA	5 cut(s)	261, 319, 635, 648, 906
TspRI	CASTG	1 cut(s)	729
Van91I	CCANNNNNTGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	812
XmiI	GTMKAC	1 cut(s)	376
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.