Rmu_sc0001576.1_g000002

calcium-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001576.1
Physical Location & Seq
Reverse (-)
1446 .. 4632
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001576.1_g000002.1.cds

Sequence Viewer

Length: 942 bp
atgtccggctgcgcctcggcgctggctccggcttctggcctagccggtggctgttgggtgaggctgaacgggtgttttgtttcaaggttgtggctaagttttgaaggattggatcggaaagtgtacggttttgcctatattggtcgaagggtgtggctgcgttggggaaatgggcggcgatcggagaagggaagggagttttctggctgtcgttgggcagctgggattgatggttgtttcaggctttcgatccggttttttctgcagatttcccatataccggtttgcgttgggtggattaaggcactcgatgttgtcctccaatggttggacgacgacggaggtgtgacgattgcccgactccagtggtgggttggcagtggtgatggcggggtggtgaagctactgctttgggcgggacgggctgaatactatgctggtttggtcctttgggcttggatgcagctggtaggcccgatctgggctggagatggggcttgggctcactttgtgcacttgggccaagttgttatttgtcagcggcgagttccttgcttcgtcaaatggtcgttgccgcctagtggcagggtgagacttagtgtcgccggatctatttttcggcggcaacatagtaggaaagctatgctaaagctgagcctttctccggcggagaagaaactcgacggagactacacagctaagatcggagatttctcctgcatctccatattcggatccaccaaggatctccgcgacgcgtttgacctctacgacctcgacaagaacgaccacatctccgcaaagaaactgcacgaggttctcaagcgattgggccagaagtgctcgctcaaggactacgcgaagatgatcggctctgtcgacgtcgacgacgatggccacgtcaacttcgaggaattcaagaagatgatgaagaaaccgtaa

Protein Analysis

313

Amino Acids

35.09

Weight (kDa)

9.46

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 885
AccB7I CCANNNNNTGG 1 cut(s) 328
AccI GTMKAC 2 cut(s) 879, 885
AccII CGCG 3 cut(s) 753, 758, 860
AciI CCGC 9 cut(s) 175, 390, 416, 541, 575, 622, 668, 751, 798
AclWI GGATC 6 cut(s) 120, 244, 616, 729, 742, 753
AcoI YGGCCR 1 cut(s) 895
AcsI RAATTY 1 cut(s) 914
AcyI GRCGYC 1 cut(s) 882
AdeI CACNNNGTG 1 cut(s) 511
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 7 cut(s) 35, 280, 328, 370, 481, 581, 664
AflIII ACRYGT 1 cut(s) 756
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 3 cut(s) 84, 104, 919
AhdI GACNNNNNGTC 1 cut(s) 599
AjiI CACGTC 1 cut(s) 901
AluBI AGCT 6 cut(s) 221, 403, 466, 641, 652, 698
AluI AGCT 6 cut(s) 221, 403, 466, 641, 652, 698
Alw21I GWGCWC 2 cut(s) 516, 845
Alw26I GTCTC 2 cut(s) 586, 681
Alw44I GTGCAC 1 cut(s) 512
AlwI GGATC 6 cut(s) 120, 244, 616, 729, 742, 753
AoxI GGCC 5 cut(s) 37, 472, 520, 832, 895
ApaLI GTGCAC 1 cut(s) 512
ApeKI GCWGC 4 cut(s) 9, 157, 218, 463
ApoI RAATTY 1 cut(s) 914
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 2 cut(s) 14, 22
AspS9I GGNCC 4 cut(s) 445, 473, 520, 832
AsuHPI GGTGA 4 cut(s) 70, 395, 409, 601
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 516
BalI TGGCCA 1 cut(s) 897
BamHI GGATCC 1 cut(s) 734
BanII GRGCYC 1 cut(s) 505
BauI CACGAG 1 cut(s) 812
Bbv12I GWGCWC 2 cut(s) 516, 845
BbvI GCAGC 3 cut(s) 144, 230, 475
BccI CCATC 4 cut(s) 224, 380, 485, 887
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BcoDI GTCTC 2 cut(s) 586, 681
BfaI CTAG 2 cut(s) 41, 579
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 8 cut(s) 10, 158, 176, 219, 464, 542, 575, 623
BlpI GCTNAGC 1 cut(s) 653
BlsI GCNGC 8 cut(s) 11, 159, 177, 220, 465, 543, 576, 624
Bme18I GGWCC 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 599
BmgBI CACGTC 1 cut(s) 901
BmgT120I GGNCC 4 cut(s) 445, 473, 520, 832
BmiI GGNNCC 2 cut(s) 27, 736
BmsI GCATC 2 cut(s) 450, 729
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpmI CTGGAG 2 cut(s) 347, 507
Bpu1102I GCTNAGC 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 806, 833
BsaHI GRCGYC 1 cut(s) 882
BsaJI CCNNGG 2 cut(s) 15, 741
BsaWI WCCGGW 2 cut(s) 252, 280
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 280, 328, 370, 481, 581, 664
Bse118I RCCGGY 2 cut(s) 44, 280
Bse1I ACTGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 15, 741
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 7 cut(s) 35, 280, 328, 370, 481, 581, 664
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 3 cut(s) 144, 230, 475
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 794
Bsh1236I CGCG 3 cut(s) 753, 758, 860
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 5 cut(s) 39, 474, 522, 834, 897
BshTI ACCGGT 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 182
BsiHKAI GWGCWC 2 cut(s) 516, 845
BsiSI CCGG 7 cut(s) 6, 29, 45, 253, 281, 606, 665
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 7 cut(s) 35, 280, 328, 370, 481, 581, 664
BsmAI GTCTC 2 cut(s) 586, 681
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 5 cut(s) 39, 474, 522, 834, 897
Bsp1286I GDGCHC 3 cut(s) 505, 516, 845
Bsp143I GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
Bsp1720I GCTNAGC 1 cut(s) 653
BspACI CCGC 9 cut(s) 175, 390, 416, 541, 575, 622, 668, 751, 798
BspANI GGCC 5 cut(s) 39, 474, 522, 834, 897
BspCNI CTCAG 1 cut(s) 645
BspFNI CGCG 3 cut(s) 753, 758, 860
BspLI GGNNCC 2 cut(s) 27, 736
BspMAI CTGCAG 1 cut(s) 267
BspPI GGATC 6 cut(s) 120, 244, 616, 729, 742, 753
BsrFI RCCGGY 2 cut(s) 44, 280
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 2 cut(s) 44, 280
BssECI CCNNGG 2 cut(s) 15, 741
BssMI GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
BssNI GRCGYC 1 cut(s) 882
BssSI CACGAG 1 cut(s) 812
BssT1I CCWWGG 1 cut(s) 741
Bst2BI CACGAG 1 cut(s) 812
Bst4CI ACNGT 2 cut(s) 128, 939
BstACI GRCGYC 1 cut(s) 882
BstC8I GCNNGC 2 cut(s) 24, 845
BstDEI CTNAG 4 cut(s) 95, 596, 653, 699
BstF5I GGATG 1 cut(s) 465
BstFNI CGCG 3 cut(s) 753, 758, 860
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 14, 22
BstKTI GATC 9 cut(s) 115, 182, 252, 480, 611, 705, 737, 748, 870
BstMAI GTCTC 2 cut(s) 586, 681
BstMBI GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 422, 840
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 516
BstUI CGCG 3 cut(s) 753, 758, 860
BstV1I GCAGC 3 cut(s) 144, 230, 475
BstX2I RGATCY 3 cut(s) 608, 734, 745
BstYI RGATCY 3 cut(s) 608, 734, 745
BsuRI GGCC 5 cut(s) 39, 474, 522, 834, 897
BtrI CACGTC 1 cut(s) 901
BtsCI GGATG 1 cut(s) 465
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 371, 385
Cac8I GCNNGC 2 cut(s) 24, 845
CfoI GCGC 2 cut(s) 14, 22
Cfr10I RCCGGY 2 cut(s) 44, 280
Cfr13I GGNCC 4 cut(s) 445, 473, 520, 832
CseI GACGC 1 cut(s) 764
Csp6I GTAC 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 280
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 4 cut(s) 95, 596, 653, 699
DpnI GATC 9 cut(s) 114, 181, 251, 479, 610, 704, 736, 747, 869
DpnII GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
DraIII CACNNNGTG 1 cut(s) 511
DriI GACNNNNNGTC 1 cut(s) 599
EaeI YGGCCR 1 cut(s) 895
Eam1105I GACNNNNNGTC 1 cut(s) 599
EciI GGCGGA 1 cut(s) 683
Eco130I CCWWGG 1 cut(s) 741
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 914
EcoT14I CCWWGG 1 cut(s) 741
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 741
FaiI YATR 7 cut(s) 138, 276, 278, 435, 630, 644, 728
FaqI GGGAC 1 cut(s) 432
FauI CCCGC 2 cut(s) 383, 409
FblI GTMKAC 2 cut(s) 879, 885
Fnu4HI GCNGC 8 cut(s) 10, 158, 176, 219, 464, 542, 575, 623
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 8 cut(s) 10, 158, 176, 219, 464, 542, 575, 623
FspBI CTAG 2 cut(s) 41, 579
GlaI GCGC 2 cut(s) 13, 21
GluI GCNGC 8 cut(s) 10, 158, 176, 219, 464, 542, 575, 623
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 2 cut(s) 347, 507
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 5 cut(s) 39, 474, 522, 834, 897
HapII CCGG 7 cut(s) 6, 29, 45, 253, 281, 606, 665
HgaI GACGC 1 cut(s) 764
HhaI GCGC 2 cut(s) 14, 22
Hin1I GRCGYC 1 cut(s) 882
Hin6I GCGC 2 cut(s) 12, 20
HinP1I GCGC 2 cut(s) 12, 20
HincII GTYRAC 3 cut(s) 880, 886, 904
HindII GTYRAC 3 cut(s) 880, 886, 904
HinfI GANTC 1 cut(s) 360
HpaII CCGG 7 cut(s) 6, 29, 45, 253, 281, 606, 665
HphI GGTGA 4 cut(s) 70, 395, 409, 601
Hpy166II GTNNAC 5 cut(s) 124, 514, 880, 886, 904
Hpy188I TCNGA 4 cut(s) 117, 184, 707, 734
Hpy188III TCNNGA 1 cut(s) 919
Hpy8I GTNNAC 5 cut(s) 124, 514, 880, 886, 904
Hpy99I CGWCG 8 cut(s) 338, 341, 686, 758, 884, 887, 890, 893
HpyAV CCTTC 4 cut(s) 98, 141, 181, 186
HpyCH4III ACNGT 2 cut(s) 128, 939
HpyCH4IV ACGT 2 cut(s) 882, 900
HpyCH4V TGCA 5 cut(s) 265, 463, 514, 720, 811
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 840
HpyF3I CTNAG 4 cut(s) 95, 596, 653, 699
HpySE526I ACGT 2 cut(s) 882, 900
Hsp92I GRCGYC 1 cut(s) 882
HspAI GCGC 2 cut(s) 12, 20
Kzo9I GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 3 cut(s) 144, 230, 475
LweI GCATC 2 cut(s) 450, 729
MaeI CTAG 2 cut(s) 41, 579
MaeII ACGT 2 cut(s) 882, 900
MaeIII GTNAC 1 cut(s) 346
MalI GATC 9 cut(s) 114, 181, 251, 479, 610, 704, 736, 747, 869
MboI GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
MboII GAAGA 3 cut(s) 685, 874, 934
MflI RGATCY 3 cut(s) 608, 734, 745
MhlI GDGCHC 3 cut(s) 505, 516, 845
MlsI TGGCCA 1 cut(s) 897
MluCI AATT 1 cut(s) 914
MluI ACGCGT 1 cut(s) 756
MluNI TGGCCA 1 cut(s) 897
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 8 cut(s) 25, 54, 329, 335, 776, 785, 808, 904
Mox20I TGGCCA 1 cut(s) 897
MscI TGGCCA 1 cut(s) 897
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 897
MspA1I CMGCKG 3 cut(s) 221, 466, 541
MspI CCGG 7 cut(s) 6, 29, 45, 253, 281, 606, 665
MvnI CGCG 3 cut(s) 753, 758, 860
MwoI GCNNNNNNNGC 2 cut(s) 422, 840
NdeII GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
NlaIV GGNNCC 2 cut(s) 27, 736
NmuCI GTSAC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 6 cut(s) 783, 876, 885, 888, 897, 906
PflMI CCANNNNNTGG 1 cut(s) 328
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 8 cut(s) 11, 159, 177, 220, 465, 543, 576, 624
Ple19I CGATCG 1 cut(s) 182
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 27, 736
PspPI GGNCC 4 cut(s) 445, 473, 520, 832
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 3 cut(s) 608, 734, 745
PvuI CGATCG 1 cut(s) 182
PvuII CAGCTG 2 cut(s) 221, 466
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SalI GTCGAC 2 cut(s) 878, 884
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 8 cut(s) 10, 158, 176, 219, 464, 542, 575, 623
Sau3AI GATC 9 cut(s) 112, 179, 249, 477, 608, 702, 734, 745, 867
Sau96I GGNCC 4 cut(s) 445, 473, 520, 832
SchI GAGTC 1 cut(s) 354
SduI GDGCHC 3 cut(s) 505, 516, 845
SfaNI GCATC 2 cut(s) 450, 729
SfcI CTRYAG 1 cut(s) 263
SgrDI CGTCGACG 1 cut(s) 884
SinI GGWCC 1 cut(s) 445
SmlI CTYRAG 2 cut(s) 821, 848
SmoI CTYRAG 2 cut(s) 821, 848
Sse9I AATT 1 cut(s) 914
SsiI CCGC 9 cut(s) 175, 390, 416, 541, 575, 622, 668, 751, 798
SspMI CTAG 2 cut(s) 41, 579
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 2 cut(s) 128, 939
TaiI ACGT 2 cut(s) 885, 903
TaqI TCGA 8 cut(s) 145, 248, 309, 681, 777, 879, 885, 909
TasI AATT 1 cut(s) 914
TauI GCSGC 4 cut(s) 178, 544, 577, 625
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 371, 385
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 9, 157, 218, 463
Tsp45I GTSAC 1 cut(s) 346
TspGWI ACGGA 2 cut(s) 354, 699
TspRI CASTG 2 cut(s) 371, 385
Van91I CCANNNNNTGG 1 cut(s) 328
VneI GTGCAC 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 1 cut(s) 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XmiI GTMKAC 2 cut(s) 879, 885
XspI CTAG 2 cut(s) 41, 579
ZraI GACGTC 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.