Rroxscaffold_4G00295650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000267
Physical Location & Seq
Reverse (-)
15713740 .. 15714086
347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295650.1

Sequence Viewer

Length: 237 bp
ATGAAATTAAGTGTCGCTAGATTTGTTTCCGTGCAGCAACATAGTGGCAAAGCTGTGCTATTTGCAATGATGCTTCTTCGTGATAGAGTTAACTTTCCGGTATGTCACCGCTATGTCATAGCAAATGGAGTAGTCATTCGTGCACTCTTTGCTAATTGGTGCTTGCTAGAATATATACTTAGATTTTGTGGAGAGTCTTGGTATTATTTCATGATGTTCTCTTTATGCTTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.19

Weight (kDa)

9.38

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 109
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 145
Alw44I GTGCAC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 46
BfaI CTAG 2 cut(s) 18, 167
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmsI GCATC 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 145
BspACI CCGC 1 cut(s) 109
BspHI TCATGA 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 164
CciI TCATGA 1 cut(s) 210
CviAII CATG 1 cut(s) 211
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
DdeI CTNAG 1 cut(s) 179
FaeI CATG 1 cut(s) 214
FaiI YATR 8 cut(s) 42, 103, 114, 119, 174, 176, 212, 226
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 2 cut(s) 18, 167
FspEI CC 9 cut(s) 30, 43, 83, 111, 111, 122, 142, 174, 184
GluI GCNGC 1 cut(s) 35
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 194
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 91, 143
Hpy188III TCNNGA 2 cut(s) 80, 211
Hpy8I GTNNAC 2 cut(s) 91, 143
HpyCH4V TGCA 3 cut(s) 34, 65, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 1 cut(s) 214
KspAI GTTAAC 1 cut(s) 91
LpnPI CCDG 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 18, 167
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 5, 154
MlyI GAGTC 1 cut(s) 203
MseI TTAA 2 cut(s) 8, 90
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 149
NlaIII CATG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 104
PagI TCATGA 1 cut(s) 210
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 8, 90
SatI GCNGC 1 cut(s) 35
SchI GAGTC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 145
SetI ASST 1 cut(s) 55
SfaNI GCATC 1 cut(s) 60
SgeI CNNG 9 cut(s) 30, 43, 92, 110, 152, 175, 179, 210, 223
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 2 cut(s) 5, 154
SsiI CCGC 1 cut(s) 109
SspMI CTAG 2 cut(s) 18, 167
TasI AATT 2 cut(s) 5, 154
Tru1I TTAA 2 cut(s) 8, 90
Tru9I TTAA 2 cut(s) 8, 90
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 2 cut(s) 17, 199
TspGWI ACGGA 1 cut(s) 19
VneI GTGCAC 1 cut(s) 141
XspI CTAG 2 cut(s) 18, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.