Rroxscaffold_1G00003120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000267
Physical Location & Seq
Reverse (-)
3647816 .. 3650660
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003120.1

Sequence Viewer

Length: 642 bp
ATGGACAACGCACAGCCGCGCGTTGTCTTTATGCGGCTACCGACGGGCACTTCAATGCCCTGGGCTTTGGTTGGGAGAGAAGATGGATGTGACTTGTGGTTTGGCGAGGCTGGTTTTGACGCGGTGGTTTGGGGCTCGAGGCGTTGCTGGCTTGTGGCGGAGCTTGACTACACGGCTCATGGCAAGGCTGGTTCTTGGCGAGGGCTGGTTCATGGCGAGGCGGCTTATGGCGTAGCTGGTTCTTGGAGGGTCTCGAGGGGCGGCGTTGCACGGGCTACGCCGGCGTGGTGGATGGCTGGTGCAGGATTTGGGTCTGAAATCCGGATCAAGGATGGGGAAAGGAGATTGGGATGGGTGGAAGAATGGTCGGGTTCATTGGTGGTTGTCGGGGTTAAGAGGGTGGTGCGGACGGCATTCACGCTACGGGGTGCTAAGGCTCGACGGAGCTTATTTTATGCCTTTAATAAGTCCGACCACATTTTGGTTTGGAGATGTGGGCTTTGTCCCGACCTGCGCACCTTGCTTGCCATGTCTGTTCTAGGTAGGAAGCGAGTTCCTTACTTTGTCAAATGGTCGCAGCCTCCTAGTGGCGAGAATGAAGCTAAGTGTCACCGGGTTATATTTCCGGTGGCAGCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.7

Weight (kDa)

9.97

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 519
AccB7I CCANNNNNTGG 1 cut(s) 481
AccII CGCG 3 cut(s) 19, 21, 122
AccIII TCCGGA 1 cut(s) 321
AciI CCGC 7 cut(s) 17, 34, 122, 158, 221, 261, 406
AclWI GGATC 1 cut(s) 332
AfiI CCNNNNNNNGG 3 cut(s) 328, 481, 587
AgsI TTSAA 1 cut(s) 54
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 4 cut(s) 163, 236, 447, 602
AluI AGCT 4 cut(s) 163, 236, 447, 602
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 332
Ama87I CYCGRG 2 cut(s) 136, 253
Aor13HI TCCGGA 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 577, 632
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 2 cut(s) 21, 516
AsuC2I CCSGG 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 602
AvaI CYCGRG 2 cut(s) 136, 253
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 589
BccI CCATC 4 cut(s) 77, 286, 326, 345
BceAI ACGGC 2 cut(s) 189, 426
BciT130I CCWGG 1 cut(s) 61
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 3 cut(s) 539, 585, 640
BfuAI ACCTGC 1 cut(s) 519
BisI GCNGC 6 cut(s) 17, 35, 222, 262, 578, 633
BlsI GCNGC 6 cut(s) 18, 36, 223, 263, 579, 634
Bme1390I CCNGG 2 cut(s) 61, 614
BmeT110I CYCGRG 2 cut(s) 136, 253
BmrFI CCNGG 2 cut(s) 61, 614
Bpu10I CCTNAGC 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 59, 60
BsaWI WCCGGW 2 cut(s) 321, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 481, 587
Bse118I RCCGGY 1 cut(s) 280
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 59, 60
BseGI GGATG 4 cut(s) 92, 297, 337, 356
BseLI CCNNNNNNNGG 3 cut(s) 328, 481, 587
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 3 cut(s) 19, 21, 122
BsiHKCI CYCGRG 2 cut(s) 136, 253
BsiSI CCGG 4 cut(s) 281, 322, 613, 626
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 3 cut(s) 328, 481, 587
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 413
Bso31I GGTCTC 1 cut(s) 256
BsoBI CYCGRG 2 cut(s) 136, 253
Bsp1286I GDGCHC 2 cut(s) 50, 137
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 7 cut(s) 17, 34, 122, 158, 221, 261, 406
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 3 cut(s) 19, 21, 122
BspMI ACCTGC 1 cut(s) 519
BspPI GGATC 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 59, 60
BssMI GATC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 61
BstC8I GCNNGC 3 cut(s) 149, 282, 525
BstDEI CTNAG 2 cut(s) 432, 603
BstF5I GGATG 4 cut(s) 92, 297, 337, 356
BstFNI CGCG 3 cut(s) 19, 21, 122
BstHHI GCGC 2 cut(s) 21, 516
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 148, 281, 520
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 59, 612
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 3 cut(s) 19, 21, 122
BstV1I GCAGC 1 cut(s) 589
BtsCI GGATG 4 cut(s) 92, 297, 337, 356
BveI ACCTGC 1 cut(s) 519
Cac8I GCNNGC 3 cut(s) 149, 282, 525
CfoI GCGC 2 cut(s) 21, 516
Cfr10I RCCGGY 1 cut(s) 280
CseI GACGC 1 cut(s) 128
CviAII CATG 3 cut(s) 179, 212, 529
DdeI CTNAG 2 cut(s) 432, 603
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EciI GGCGGA 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 256
Eco88I CYCGRG 2 cut(s) 136, 253
EcoRII CCWGG 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 3 cut(s) 182, 215, 532
FaiI YATR 8 cut(s) 32, 180, 213, 228, 456, 530, 620, 637
FaqI GGGAC 1 cut(s) 489
FatI CATG 3 cut(s) 178, 211, 528
Fnu4HI GCNGC 6 cut(s) 17, 35, 222, 262, 578, 633
FokI GGATG 4 cut(s) 99, 304, 344, 363
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 6 cut(s) 17, 35, 222, 262, 578, 633
FspBI CTAG 3 cut(s) 539, 585, 640
FspI TGCGCA 1 cut(s) 515
GlaI GCGC 2 cut(s) 20, 515
GluI GCNGC 6 cut(s) 17, 35, 222, 262, 578, 633
HapII CCGG 4 cut(s) 281, 322, 613, 626
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 21, 516
Hin1II CATG 3 cut(s) 182, 215, 532
Hin6I GCGC 2 cut(s) 19, 514
HinP1I GCGC 2 cut(s) 19, 514
HpaII CCGG 4 cut(s) 281, 322, 613, 626
HphI GGTGA 1 cut(s) 602
Hpy188I TCNGA 2 cut(s) 316, 472
Hpy188III TCNNGA 3 cut(s) 253, 322, 506
Hpy99I CGWCG 2 cut(s) 46, 444
HpyCH4V TGCA 2 cut(s) 269, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 281, 520
HpyF3I CTNAG 2 cut(s) 432, 603
Hsp92II CATG 3 cut(s) 182, 215, 532
HspAI GCGC 2 cut(s) 19, 514
Kpn2I TCCGGA 1 cut(s) 321
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 160, 444
Lsp1109I GCAGC 1 cut(s) 589
MaeI CTAG 3 cut(s) 539, 585, 640
MaeIII GTNAC 2 cut(s) 89, 608
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 2 cut(s) 92, 371
MhlI GDGCHC 2 cut(s) 50, 137
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 8 cut(s) 100, 132, 194, 211, 240, 249, 390, 591
MreI CGCCGGCG 1 cut(s) 280
MroI TCCGGA 1 cut(s) 321
MroNI GCCGGC 1 cut(s) 280
MseI TTAA 2 cut(s) 393, 462
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 4 cut(s) 281, 322, 613, 626
MspR9I CCNGG 2 cut(s) 61, 614
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 61
MvnI CGCG 3 cut(s) 19, 21, 122
MwoI GCNNNNNNNGC 3 cut(s) 148, 281, 520
NaeI GCCGGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 614
NdeII GATC 1 cut(s) 324
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 3 cut(s) 182, 215, 532
NmuCI GTSAC 2 cut(s) 89, 608
NsbI TGCGCA 1 cut(s) 515
PaeR7I CTCGAG 2 cut(s) 136, 253
PasI CCCWGGG 1 cut(s) 60
PctI GAATGC 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 6 cut(s) 18, 36, 223, 263, 579, 634
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspXI VCTCGAGB 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 393, 462
SatI GCNGC 6 cut(s) 17, 35, 222, 262, 578, 633
Sau3AI GATC 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 61, 614
SduI GDGCHC 2 cut(s) 50, 137
SetI ASST 7 cut(s) 165, 238, 449, 513, 521, 544, 604
Sfr274I CTCGAG 2 cut(s) 136, 253
SgrAI CRCCGGYG 1 cut(s) 280
SlaI CTCGAG 2 cut(s) 136, 253
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 136, 253
SmoI CTYRAG 2 cut(s) 136, 253
SsiI CCGC 7 cut(s) 17, 34, 122, 158, 221, 261, 406
SspMI CTAG 3 cut(s) 539, 585, 640
StyD4I CCNGG 2 cut(s) 59, 612
TaqI TCGA 3 cut(s) 137, 254, 439
TauI GCSGC 4 cut(s) 19, 37, 224, 264
Tru1I TTAA 2 cut(s) 393, 462
Tru9I TTAA 2 cut(s) 393, 462
TseFI GTSAC 2 cut(s) 89, 608
TseI GCWGC 2 cut(s) 577, 632
Tsp45I GTSAC 2 cut(s) 89, 608
TspDTI ATGAA 3 cut(s) 200, 363, 612
TspGWI ACGGA 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 481
XhoI CTCGAG 2 cut(s) 136, 253
XspI CTAG 3 cut(s) 539, 585, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.