Rorug05G0313700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000267
Physical Location & Seq
Reverse (-)
37093591 .. 37094399
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0313700.1

Sequence Viewer

Length: 720 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGAGGACAAACATCCCAGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAGACATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

25.88

Weight (kDa)

5.19

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 1.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AciI CCGC 2 cut(s) 648, 657
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 353, 437, 599
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 3 cut(s) 116, 346, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 4 cut(s) 31, 223, 434, 682
AluI AGCT 4 cut(s) 31, 223, 434, 682
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 74, 317
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
AseI ATTAAT 1 cut(s) 495
Asp700I GAANNNNTTC 2 cut(s) 340, 579
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 381, 428, 462
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 554, 614
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 2 cut(s) 381, 462
BaeGI GKGCMC 1 cut(s) 330
BamHI GGATCC 4 cut(s) 147, 359, 407, 440
BanII GRGCYC 2 cut(s) 286, 684
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 86, 304
BccI CCATC 4 cut(s) 19, 50, 419, 476
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 3 cut(s) 118, 348, 566
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 2 cut(s) 339, 468
BfmI CTRYAG 2 cut(s) 192, 697
BfoI RGCGCY 1 cut(s) 187
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 75, 318
BlpI GCTNAGC 1 cut(s) 683
BlsI GCNGC 2 cut(s) 76, 319
Bme1390I CCNGG 4 cut(s) 79, 118, 348, 566
Bme18I GGWCC 2 cut(s) 381, 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 462
BmrFI CCNGG 4 cut(s) 79, 118, 348, 566
BmsI GCATC 2 cut(s) 627, 694
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 3 cut(s) 117, 203, 546
Bpu1102I GCTNAGC 1 cut(s) 683
BpuEI CTTGAG 3 cut(s) 137, 306, 698
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 330, 636
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 437, 599
Bse1I ACTGG 5 cut(s) 229, 358, 391, 400, 529
BseBI CCWGG 3 cut(s) 118, 348, 566
BseDI CCNNGG 2 cut(s) 330, 636
BseGI GGATG 2 cut(s) 61, 536
BseLI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 5 cut(s) 229, 358, 391, 400, 529
BseRI GAGGAG 2 cut(s) 567, 570
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 2 cut(s) 86, 304
BseYI CCCAGC 2 cut(s) 39, 540
BshFI GGCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 353, 437, 599
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 286, 330, 684
Bsp1720I GCTNAGC 1 cut(s) 683
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 2 cut(s) 648, 657
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 1 cut(s) 696
BspHI TCATGA 1 cut(s) 621
BsrI ACTGG 5 cut(s) 229, 358, 391, 400, 529
BssECI CCNNGG 2 cut(s) 330, 636
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 118, 348, 566
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 683, 717
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 61, 536
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 221
BstMWI GCNNNNNNNGC 2 cut(s) 654, 713
BstNI CCWGG 3 cut(s) 118, 348, 566
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 4 cut(s) 77, 116, 346, 564
BstSFI CTRYAG 2 cut(s) 192, 697
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 86, 304
BstV2I GAAGAC 1 cut(s) 632
BstX2I RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BstYI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 61, 536
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 621
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 381, 428, 462
Csp6I GTAC 1 cut(s) 351
CviAII CATG 6 cut(s) 239, 331, 595, 599, 622, 712
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 2 cut(s) 683, 717
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 2 cut(s) 286, 684
Eco47I GGWCC 2 cut(s) 381, 462
Eco53kI GAGCTC 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 682
EcoRII CCWGG 3 cut(s) 116, 346, 564
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 286, 684
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 6 cut(s) 242, 334, 598, 602, 625, 715
FaiI YATR 9 cut(s) 201, 234, 240, 332, 596, 600, 623, 654, 713
FatI CATG 6 cut(s) 238, 330, 594, 598, 621, 711
Fnu4HI GCNGC 2 cut(s) 75, 318
FokI GGATG 2 cut(s) 68, 523
FriOI GRGCYC 2 cut(s) 286, 684
Fsp4HI GCNGC 2 cut(s) 75, 318
FspBI CTAG 2 cut(s) 339, 468
GlaI GCGC 1 cut(s) 185
GluI GCNGC 2 cut(s) 75, 318
GsaI CCCAGC 2 cut(s) 43, 544
GsuI CTGGAG 3 cut(s) 117, 203, 546
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 1 cut(s) 430
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 186
Hin1II CATG 6 cut(s) 242, 334, 598, 602, 625, 715
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 1 cut(s) 518
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 554, 614
Hpy166II GTNNAC 2 cut(s) 384, 465
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 5 cut(s) 134, 206, 271, 287, 622
Hpy8I GTNNAC 2 cut(s) 384, 465
HpyAV CCTTC 1 cut(s) 590
HpyCH4V TGCA 4 cut(s) 19, 309, 598, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 654, 713
HpyF3I CTNAG 2 cut(s) 683, 717
Hsp92II CATG 6 cut(s) 242, 334, 598, 602, 625, 715
HspAI GCGC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 86, 304
LweI GCATC 2 cut(s) 627, 694
MaeI CTAG 2 cut(s) 339, 468
MboII GAAGA 2 cut(s) 313, 637
MflI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
MhlI GDGCHC 3 cut(s) 286, 330, 684
MluCI AATT 3 cut(s) 373, 421, 454
Mph1103I ATGCAT 1 cut(s) 600
MroXI GAANNNNTTC 2 cut(s) 340, 579
MseI TTAA 2 cut(s) 180, 495
MspA1I CMGCKG 2 cut(s) 223, 434
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 4 cut(s) 79, 118, 348, 566
MvaI CCWGG 3 cut(s) 118, 348, 566
MwoI GCNNNNNNNGC 2 cut(s) 654, 713
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 330
NlaIII CATG 6 cut(s) 242, 334, 598, 602, 625, 715
NsiI ATGCAT 1 cut(s) 600
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PagI TCATGA 1 cut(s) 621
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 2 cut(s) 340, 579
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 76, 319
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 495
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 3 cut(s) 116, 346, 564
PspFI CCCAGC 2 cut(s) 39, 540
PspGI CCWGG 3 cut(s) 116, 346, 564
PspPI GGNCC 3 cut(s) 381, 428, 462
PsuI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
PvuII CAGCTG 2 cut(s) 223, 434
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 180, 495
SatI GCNGC 2 cut(s) 75, 318
Sau96I GGNCC 3 cut(s) 381, 428, 462
ScrFI CCNGG 4 cut(s) 79, 118, 348, 566
SduI GDGCHC 3 cut(s) 286, 330, 684
SetI ASST 7 cut(s) 33, 122, 225, 308, 436, 646, 684
SfaNI GCATC 2 cut(s) 627, 694
SfcI CTRYAG 2 cut(s) 192, 697
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 2 cut(s) 381, 462
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 4 cut(s) 152, 285, 321, 677
SmoI CTYRAG 4 cut(s) 152, 285, 321, 677
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 3 cut(s) 373, 421, 454
SsiI CCGC 2 cut(s) 648, 657
SspMI CTAG 2 cut(s) 339, 468
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 4 cut(s) 77, 116, 346, 564
StyI CCWWGG 1 cut(s) 330
TaqI TCGA 3 cut(s) 51, 286, 414
TasI AATT 3 cut(s) 373, 421, 454
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 180, 495
Tru9I TTAA 2 cut(s) 180, 495
TscAI CASTG 1 cut(s) 391
TseI GCWGC 2 cut(s) 74, 317
TspDTI ATGAA 2 cut(s) 314, 638
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 381, 462
VspI ATTAAT 1 cut(s) 495
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 340, 579
XspI CTAG 2 cut(s) 339, 468
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.