RchiOBHm_Chr4g0413331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Reverse (-)
37575444 .. 37576439
996 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38386

Sequence Viewer

Length: 996 bp
ATGAGGATGGAGGATAGCGGCGAGGCTCTATGGCGGGGATCTAGCTCAGGGATGGAGGTTGACAGCTTCTACTGGGATCGGGGCGGAGCTTCGTCTCTTCGTCGATCGGGGGTGGGAGCTGGCACGGATTTCCGGCGTGGTGTTATCTGCCGGCAGGGCTCGATCTGCCGGATGCTGCAGGTGTCTGGGCCAAGGATGGTTTCTTGGCGGTGGTTGGGTCTCGGAGTTAGATCTCGGATCTGGGTTTGGGGTTGGACAGGGATCTGCAGGTGCGTTTCTGTGTTGTTTATGGGGCAGTTGGAGTGGCTCTGGGACACGGACGGCCGGCGGCGAACCGTGGAGGCTCTGCGGCAACTGGGGGCTGGGGGACGGTCGCTGAGATCTCAATCTAGTCGGTTCTGGATCGGGTTTCGGGCACCAATCGGGTTGAAGAAGGGCCTGCACAGTGTCGTGGTGATGCGGCGGTGCAGGGTTGCTGCGCGGCGGCGTCGTGCTACTTGGGGGCGATCTGGTGCCGGCGCTGGCAGATCGATGCTCGCTTGGTGGGCGTCTGCATTGGGCCTATGGGAGAGATGGTGGATGGGCCGGGCTTCGGCTGTTTGGTTTTGCTGCTGTTTTTTATTTCATGCTTGTTTGTTTGTTCTTCTTTCAGTTGTTTCTTTGTCGGTAATAACCTCCAACCGTGTTCCGGTAGGAGGCAGTGGCCTGAGTGCCAGTGGCCTGTGTGCCAGTCTTTGCACCTTGTGTGCCTTCTCTGCTCTAGGTTGGCGGCGACTTCCTTGCTCTTGCAAATGGTTGCTGCCTCTTAGTAACAGAGGGAATTTAAGTGTCACCGGATGTAGTGTCCGGTGGCAACATAATGGGAAAGCTGTGCATATGGTAGTTATGCTTTGCTGCAGCCGGGTTGCAGACCAAGTTATCTTTCCGTTGTGTCTCCGCTGCATTACTGCAGTTAAAGCAAATAGAGTCGCCAGTTGTGCGCTCTTTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

36.67

Weight (kDa)

11.27

Isoelectric Point (pI)

55.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 169, 258
Acc36I ACCTGC 2 cut(s) 169, 258
AccB1I GGYRCC 2 cut(s) 415, 512
AccII CGCG 1 cut(s) 481
AclWI GGATC 5 cut(s) 46, 84, 245, 269, 410
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 1 cut(s) 820
AcyI GRCGYC 2 cut(s) 487, 548
AdeI CACNNNGTG 1 cut(s) 744
AfiI CCNNNNNNNGG 3 cut(s) 592, 688, 695
AgsI TTSAA 1 cut(s) 430
AjuI GAANNNNNNNTTGG 4 cut(s) 184, 216, 906, 938
AluBI AGCT 5 cut(s) 45, 66, 89, 119, 869
AluI AGCT 5 cut(s) 45, 66, 89, 119, 869
Alw26I GTCTC 3 cut(s) 99, 224, 938
AlwI GGATC 5 cut(s) 46, 84, 245, 269, 410
AoxI GGCC 7 cut(s) 188, 322, 436, 559, 583, 703, 718
ApeKI GCWGC 7 cut(s) 175, 476, 609, 799, 894, 897, 939
ApoI RAATTY 1 cut(s) 820
AspLEI GCGC 3 cut(s) 481, 521, 982
AspS9I GGNCC 4 cut(s) 188, 436, 559, 583
AsuC2I CCSGG 2 cut(s) 587, 902
AsuHPI GGTGA 2 cut(s) 466, 823
BaeGI GKGCMC 1 cut(s) 418
BanI GGYRCC 2 cut(s) 415, 512
BanII GRGCYC 1 cut(s) 161
BbvI GCAGC 7 cut(s) 162, 463, 596, 786, 881, 909, 926
BccI CCATC 4 cut(s) 46, 190, 567, 574
BceAI ACGGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 762, 796
BcnI CCSGG 2 cut(s) 587, 902
BcoDI GTCTC 3 cut(s) 99, 224, 938
BfaI CTAG 4 cut(s) 42, 390, 761, 990
BfmI CTRYAG 4 cut(s) 176, 265, 895, 948
BfoI RGCGCY 1 cut(s) 522
BfuAI ACCTGC 2 cut(s) 169, 258
BglI GCCNNNNNGGC 1 cut(s) 156
BglII AGATCT 2 cut(s) 230, 380
Bme1390I CCNGG 2 cut(s) 587, 902
BmgT120I GGNCC 4 cut(s) 188, 436, 559, 583
BmiI GGNNCC 2 cut(s) 417, 514
BmrFI CCNGG 2 cut(s) 587, 902
BmrI ACTGGG 2 cut(s) 82, 365
BmsI GCATC 3 cut(s) 162, 447, 522
BmuI ACTGGG 2 cut(s) 82, 365
Bpu10I CCTNAGC 1 cut(s) 46
BpuMI CCSGG 2 cut(s) 587, 902
Bsa29I ATCGAT 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 385
BsaHI GRCGYC 2 cut(s) 487, 548
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 191, 336
BsaWI WCCGGW 3 cut(s) 688, 833, 846
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 3 cut(s) 592, 688, 695
Bse118I RCCGGY 3 cut(s) 150, 324, 515
Bse1I ACTGG 5 cut(s) 77, 360, 714, 729, 972
Bse8I GATNNNNATC 1 cut(s) 385
BseCI ATCGAT 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 191, 336
BseGI GGATG 6 cut(s) 12, 57, 177, 201, 585, 842
BseJI GATNNNNATC 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 592, 688, 695
BseMII CTCAG 3 cut(s) 60, 368, 698
BseNI ACTGG 5 cut(s) 77, 360, 714, 729, 972
BseSI GKGCMC 1 cut(s) 418
BseX3I CGGCCG 1 cut(s) 322
BseXI GCAGC 7 cut(s) 162, 463, 596, 786, 881, 909, 926
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 2 cut(s) 425, 487
Bsh1236I CGCG 1 cut(s) 481
Bsh1285I CGRYCG 3 cut(s) 107, 325, 374
BshFI GGCC 7 cut(s) 190, 324, 438, 561, 585, 705, 720
BshNI GGYRCC 2 cut(s) 415, 512
BshVI ATCGAT 1 cut(s) 530
BsiEI CGRYCG 3 cut(s) 107, 325, 374
BslFI GGGAC 2 cut(s) 326, 381
BslI CCNNNNNNNGG 3 cut(s) 592, 688, 695
BsmAI GTCTC 3 cut(s) 99, 224, 938
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 326, 381
BsnI GGCC 7 cut(s) 190, 324, 438, 561, 585, 705, 720
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 161, 418
BspANI GGCC 7 cut(s) 190, 324, 438, 561, 585, 705, 720
BspCNI CTCAG 3 cut(s) 59, 369, 699
BspDI ATCGAT 1 cut(s) 530
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 417, 514
BspMAI CTGCAG 4 cut(s) 180, 269, 899, 952
BspMI ACCTGC 2 cut(s) 169, 258
BspPI GGATC 5 cut(s) 46, 84, 245, 269, 410
BspT107I GGYRCC 2 cut(s) 415, 512
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 3 cut(s) 150, 324, 515
BsrI ACTGG 5 cut(s) 77, 360, 714, 729, 972
BssAI RCCGGY 3 cut(s) 150, 324, 515
BssECI CCNNGG 2 cut(s) 191, 336
BssNI GRCGYC 2 cut(s) 487, 548
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 4 cut(s) 337, 372, 446, 683
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 2 cut(s) 487, 548
BstC8I GCNNGC 7 cut(s) 121, 152, 326, 440, 517, 523, 537
BstDEI CTNAG 4 cut(s) 46, 377, 707, 806
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 6 cut(s) 12, 57, 177, 201, 585, 842
BstFNI CGCG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 3 cut(s) 481, 521, 982
BstMAI GTCTC 3 cut(s) 99, 224, 938
BstMCI CGRYCG 3 cut(s) 107, 325, 374
BstMWI GCNNNNNNNGC 7 cut(s) 156, 165, 545, 755, 956, 977, 986
BstSCI CCNGG 2 cut(s) 585, 900
BstSFI CTRYAG 4 cut(s) 176, 265, 895, 948
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 7 cut(s) 162, 463, 596, 786, 881, 909, 926
BstX2I RGATCY 5 cut(s) 38, 230, 237, 261, 380
BstYI RGATCY 5 cut(s) 38, 230, 237, 261, 380
BstZI CGGCCG 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 530
BsuRI GGCC 7 cut(s) 190, 324, 438, 561, 585, 705, 720
BsuTUI ATCGAT 1 cut(s) 530
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 6 cut(s) 12, 57, 177, 201, 585, 842
BtsI GCAGTG 1 cut(s) 706
BtsIMutI CAGTG 3 cut(s) 451, 706, 721
BveI ACCTGC 2 cut(s) 169, 258
Cac8I GCNNGC 7 cut(s) 121, 152, 326, 440, 517, 523, 537
CfoI GCGC 3 cut(s) 481, 521, 982
Cfr10I RCCGGY 3 cut(s) 150, 324, 515
Cfr13I GGNCC 4 cut(s) 188, 436, 559, 583
ClaI ATCGAT 1 cut(s) 530
CseI GACGC 2 cut(s) 476, 537
CviAII CATG 1 cut(s) 626
DdeI CTNAG 4 cut(s) 46, 377, 707, 806
DraIII CACNNNGTG 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 322
EagI CGGCCG 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 224
Eco52I CGGCCG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 629
FaiI YATR 8 cut(s) 31, 290, 565, 627, 858, 876, 878, 887
FaqI GGGAC 2 cut(s) 326, 381
FatI CATG 1 cut(s) 625
FauI CCCGC 1 cut(s) 27
FauNDI CATATG 1 cut(s) 876
FokI GGATG 6 cut(s) 19, 64, 184, 208, 592, 849
FriOI GRGCYC 1 cut(s) 161
FspBI CTAG 4 cut(s) 42, 390, 761, 990
GlaI GCGC 3 cut(s) 480, 520, 981
GsaI CCCAGC 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 7 cut(s) 190, 324, 438, 561, 585, 705, 720
HgaI GACGC 2 cut(s) 476, 537
HhaI GCGC 3 cut(s) 481, 521, 982
Hin1I GRCGYC 2 cut(s) 487, 548
Hin1II CATG 1 cut(s) 629
Hin6I GCGC 3 cut(s) 479, 519, 980
HinP1I GCGC 3 cut(s) 479, 519, 980
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 966
HphI GGTGA 2 cut(s) 466, 823
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 224, 237
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 2 cut(s) 105, 492
HpyAV CCTTC 2 cut(s) 427, 760
HpyCH4III ACNGT 4 cut(s) 337, 372, 446, 683
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 165, 545, 755, 956, 977, 986
HpyF3I CTNAG 4 cut(s) 46, 377, 707, 806
Hsp92I GRCGYC 2 cut(s) 487, 548
Hsp92II CATG 1 cut(s) 629
HspAI GCGC 3 cut(s) 479, 519, 980
KroI GCCGGC 3 cut(s) 150, 324, 515
KroNI GCCGGC 3 cut(s) 152, 326, 517
LmnI GCTCC 2 cut(s) 86, 116
Lsp1109I GCAGC 7 cut(s) 162, 463, 596, 786, 881, 909, 926
LweI GCATC 3 cut(s) 162, 447, 522
MaeI CTAG 4 cut(s) 42, 390, 761, 990
MaeIII GTNAC 2 cut(s) 809, 829
MboII GAAGA 3 cut(s) 89, 442, 635
MflI RGATCY 5 cut(s) 38, 230, 237, 261, 380
MhlI GDGCHC 2 cut(s) 161, 418
MluCI AATT 1 cut(s) 820
MlyI GAGTC 1 cut(s) 975
MmeI TCCRAC 3 cut(s) 233, 279, 702
MnlI CCTC 8 cut(s) 4, 16, 49, 334, 685, 689, 809, 813
MroNI GCCGGC 3 cut(s) 150, 324, 515
MseI TTAA 2 cut(s) 824, 954
MspA1I CMGCKG 1 cut(s) 939
MspR9I CCNGG 2 cut(s) 587, 902
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 7 cut(s) 156, 165, 545, 755, 956, 977, 986
NaeI GCCGGC 3 cut(s) 152, 326, 517
NciI CCSGG 2 cut(s) 587, 902
NdeI CATATG 1 cut(s) 876
NgoMIV GCCGGC 3 cut(s) 150, 324, 515
NlaIII CATG 1 cut(s) 629
NlaIV GGNNCC 2 cut(s) 417, 514
NmuCI GTSAC 1 cut(s) 829
PaqCI CACCTGC 2 cut(s) 169, 258
PdiI GCCGGC 3 cut(s) 152, 326, 517
Ple19I CGATCG 1 cut(s) 107
PleI GAGTC 1 cut(s) 974
PpsI GAGTC 1 cut(s) 974
PspFI CCCAGC 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 417, 514
PspPI GGNCC 4 cut(s) 188, 436, 559, 583
PstI CTGCAG 4 cut(s) 180, 269, 899, 952
PsuI RGATCY 5 cut(s) 38, 230, 237, 261, 380
PvuI CGATCG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 824, 954
Sau96I GGNCC 4 cut(s) 188, 436, 559, 583
SchI GAGTC 1 cut(s) 975
ScrFI CCNGG 2 cut(s) 587, 902
SduI GDGCHC 2 cut(s) 161, 418
SfaNI GCATC 3 cut(s) 162, 447, 522
SfcI CTRYAG 4 cut(s) 176, 265, 895, 948
Sse9I AATT 1 cut(s) 820
SspMI CTAG 4 cut(s) 42, 390, 761, 990
StyD4I CCNGG 2 cut(s) 585, 900
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 4 cut(s) 337, 372, 446, 683
TaqI TCGA 3 cut(s) 103, 161, 530
TasI AATT 1 cut(s) 820
TauI GCSGC 7 cut(s) 21, 331, 352, 463, 484, 487, 772
Tru1I TTAA 2 cut(s) 824, 954
Tru9I TTAA 2 cut(s) 824, 954
TscAI CASTG 3 cut(s) 451, 706, 721
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 7 cut(s) 175, 476, 609, 799, 894, 897, 939
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 1 cut(s) 614
TspGWI ACGGA 3 cut(s) 140, 332, 915
TspRI CASTG 3 cut(s) 451, 706, 721
XapI RAATTY 1 cut(s) 820
XspI CTAG 4 cut(s) 42, 390, 761, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.