Rorug06G0409900

DNA-directed RNA-polymerase II subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000267
Physical Location & Seq
Reverse (-)
55223093 .. 55224895
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0409900.1

Sequence Viewer

Length: 1299 bp
ATGGCGCTTCGCCGAGACAAGGCGGTCGCTCAGTCTTCACTTCGCGGATCTCGAATTCTTGTAGCCATTGTCGTCGGAGTCCTTCTCGGCTGTGTCTTCGCCTTCTTGTATCCTCACGGCTTCTTCTCCAACTCTGATGATCCGCTCATCCAAAACCGCCGAATCGGGAAATCGGACCTCCAGAGTAGCTCTTCTCAATGTGAACCACCGGAACGGATTAACATGCTGAGGTCTGATATTGGAGCACTGTCGGACAAGAATGCTGAGTTGAAGAAGCAGATACAAGATCTAACTGAAAAGCTACGGCTGGCTGAGCAGGGGAAAGATCATGCACATGAGCAGTTTTCAGTGTTAAGCAAGCCACACAAGGCTGGACCTTTTGGTACCGTCAAGGGCTTGAGGACTAACCCGACTGTTACTCCTGATGAATCTGTGAATCCGAGGTTGGCAAAGATCTTGGAGGAAGTAGCGGTTCATAAAGAACTCATTGTTGTACTGGCAAATTCTAATGTGAAGTCCATGTTGGAGGTGCAGTTTACTAGCATCAAGAAGGCTGGCATAACCAATTATCTTGTTGTTGCATTAGACGATCAGATTGAAGAATTTTGCAAAGCCAATGATGTTCCTGTATACAGGAGAGCTCCAGATGAAGGTATTGATTCAGTTGCAAAGACTGGAGGTAACCATGCCGTCTCTGGGTTGAAGTTCCGTATCTTGAGGGAGTTTTTGCAACTAGGTTATGGCGTACTTCTCTCAGACGTTGATATAGTGTACTTGCAGAACCCATTCAATCATCTCTATCGGGATTCCGATGTAGAGTCAATGACTGATGGTCACAATAACATGACAGCTTATGGATACAATGATGTTTTTGATGAACCTTCTATGGGTTGGGCTCGTTATGCTCATACAATGAGGATATGGGTTTATAACTCTGGCTTCTTCTACTTAAGACCTACACTTCCTGCAATTGAGCTTTTGGATCGTGTGGCTGGACGGCTTTCTAGGGAAAAAGCATGGGACCAAGCTGTTTTTAATGAAGAGCTGTATTTCCCTTCACATCCGGGGTATGATGGGCTTCATGCTGCCAAGAGAACGATGGATTTCTATATGTTTATGAACAGCAAGGTTCTCTTCAAGACGGTCAGGAAAGATGCTAATTTGAAAAAGTTGAAACCAGTAATCCTTCATGTAAATTACCACCCAGACAAACTTCCAAGAATGAAGGCAATTGTAGAGTTCTATATTAATGGCAAGCAAGATGCGCTGGAACCTTTCCCTGATGGTTCTGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb4

Protein Analysis

432

Amino Acids

48.82

Weight (kDa)

7.73

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 187 - 405 3.2e-46 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
AasI GACNNNNNNGTC 1 cut(s) 23
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 45
AciI CCGC 5 cut(s) 23, 45, 143, 157, 470
AclWI GGATC 3 cut(s) 55, 134, 990
AcsI RAATTY 3 cut(s) 54, 502, 602
AfaI GTAC 4 cut(s) 385, 495, 747, 773
AfiI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
AflII CTTAAG 1 cut(s) 949
AgsI TTSAA 7 cut(s) 271, 599, 703, 790, 1138, 1165, 1174
AhdI GACNNNNNGTC 1 cut(s) 831
AjuI GAANNNNNNNTTGG 4 cut(s) 428, 460, 506, 538
AluBI AGCT 7 cut(s) 189, 301, 641, 851, 976, 1028, 1045
AluI AGCT 7 cut(s) 189, 301, 641, 851, 976, 1028, 1045
Alw21I GWGCWC 2 cut(s) 247, 643
Alw26I GTCTC 2 cut(s) 9, 697
AlwI GGATC 3 cut(s) 55, 134, 990
ApeKI GCWGC 1 cut(s) 1085
ApoI RAATTY 3 cut(s) 54, 502, 602
AseI ATTAAT 1 cut(s) 1248
Asp700I GAANNNNTTC 1 cut(s) 785
Asp718I GGTACC 1 cut(s) 383
AspLEI GCGC 2 cut(s) 7, 1267
AspS9I GGNCC 3 cut(s) 175, 374, 1021
AsuC2I CCSGG 1 cut(s) 1065
AvaII GGWCC 3 cut(s) 175, 374, 1021
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 2 cut(s) 643, 898
BbsI GAAGAC 2 cut(s) 27, 88
Bbv12I GWGCWC 2 cut(s) 247, 643
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 1072
BccI CCATC 4 cut(s) 824, 1067, 1093, 1277
BceAI ACGGC 4 cut(s) 133, 320, 674, 1013
BciVI GTATCC 2 cut(s) 120, 851
BcnI CCSGG 1 cut(s) 1065
BcoDI GTCTC 2 cut(s) 9, 697
BfaI CTAG 3 cut(s) 540, 734, 1005
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 949
BfuI GTATCC 2 cut(s) 120, 851
BglII AGATCT 2 cut(s) 286, 453
BisI GCNGC 1 cut(s) 1086
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 1087
Bme1390I CCNGG 1 cut(s) 1065
Bme18I GGWCC 3 cut(s) 175, 374, 1021
BmeRI GACNNNNNGTC 1 cut(s) 831
BmgT120I GGNCC 3 cut(s) 175, 374, 1021
BmiI GGNNCC 3 cut(s) 385, 1022, 1272
BmrFI CCNGG 1 cut(s) 1065
BmsI GCATC 3 cut(s) 552, 1144, 1252
BpiI GAAGAC 2 cut(s) 27, 88
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 3 cut(s) 164, 627, 696
Bpu10I CCTNAGC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 418, 736
BpuMI CCSGG 1 cut(s) 1065
BsaJI CCNNGG 2 cut(s) 440, 1064
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 518, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
Bse1I ACTGG 3 cut(s) 501, 679, 1178
BseDI CCNNGG 2 cut(s) 440, 1064
BseGI GGATG 2 cut(s) 147, 1060
BseLI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
BseMII CTCAG 5 cut(s) 44, 218, 255, 303, 768
BseNI ACTGG 3 cut(s) 501, 679, 1178
BseXI GCAGC 1 cut(s) 1072
BsgI GTGCAG 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 247, 643
BsiSI CCGG 2 cut(s) 209, 1064
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
BsmAI GTCTC 2 cut(s) 9, 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 1 cut(s) 1034
BsmI GAATGC 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 247, 643, 898
Bsp143I GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 5 cut(s) 23, 45, 143, 157, 470
BspCNI CTCAG 5 cut(s) 43, 219, 256, 304, 767
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 385, 1022, 1272
BspPI GGATC 3 cut(s) 55, 134, 990
BspQI GCTCTTC 2 cut(s) 196, 1035
BspT107I GGYRCC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 949
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 3 cut(s) 501, 679, 1178
BssECI CCNNGG 2 cut(s) 440, 1064
BssMI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
BssNAI GTATAC 1 cut(s) 631
Bst1107I GTATAC 1 cut(s) 631
Bst4CI ACNGT 4 cut(s) 249, 388, 415, 1144
Bst6I CTCTTC 3 cut(s) 196, 1035, 1139
BstAFI CTTAAG 1 cut(s) 949
BstC8I GCNNGC 4 cut(s) 309, 359, 556, 1256
BstDEI CTNAG 5 cut(s) 30, 227, 264, 312, 754
BstEII GGTNACC 1 cut(s) 680
BstF5I GGATG 2 cut(s) 147, 1060
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 1267
BstKTI GATC 7 cut(s) 50, 142, 289, 328, 456, 592, 985
BstMAI GTCTC 2 cut(s) 9, 697
BstMBI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 313, 902, 1264
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 1063
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 1072
BstV2I GAAGAC 2 cut(s) 27, 88
BstX2I RGATCY 3 cut(s) 47, 286, 453
BstYI RGATCY 3 cut(s) 47, 286, 453
BstZ17I GTATAC 1 cut(s) 631
BsuI GTATCC 2 cut(s) 120, 851
BtsCI GGATG 2 cut(s) 147, 1060
BtsIMutI CAGTG 2 cut(s) 245, 354
Cac8I GCNNGC 4 cut(s) 309, 359, 556, 1256
CfoI GCGC 2 cut(s) 7, 1267
Cfr13I GGNCC 3 cut(s) 175, 374, 1021
Csp6I GTAC 4 cut(s) 384, 494, 746, 772
CviAII CATG 9 cut(s) 223, 329, 335, 520, 686, 844, 1017, 1082, 1190
CviQI GTAC 4 cut(s) 384, 494, 746, 772
DdeI CTNAG 5 cut(s) 30, 227, 264, 312, 754
DpnI GATC 7 cut(s) 49, 141, 288, 327, 455, 591, 984
DpnII GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
DrdI GACNNNNNNGTC 1 cut(s) 23
DriI GACNNNNNGTC 1 cut(s) 831
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1104I CTCTTC 3 cut(s) 196, 1035, 1139
Eam1105I GACNNNNNGTC 1 cut(s) 831
EarI CTCTTC 3 cut(s) 196, 1035, 1139
Ecl136II GAGCTC 1 cut(s) 641
Eco24I GRGCYC 2 cut(s) 643, 898
Eco47I GGWCC 3 cut(s) 175, 374, 1021
Eco53kI GAGCTC 1 cut(s) 641
Eco91I GGTNACC 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 641
EcoO65I GGTNACC 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 643, 898
Esp3I CGTCTC 1 cut(s) 697
FaeI CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
FalI AAGNNNNNCTT 2 cut(s) 1118, 1150
FaqI GGGAC 1 cut(s) 1034
FatI CATG 9 cut(s) 222, 328, 334, 519, 685, 843, 1016, 1081, 1189
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 1 cut(s) 1086
FokI GGATG 2 cut(s) 134, 1047
FriOI GRGCYC 2 cut(s) 643, 898
Fsp4HI GCNGC 1 cut(s) 1086
FspBI CTAG 3 cut(s) 540, 734, 1005
GlaI GCGC 2 cut(s) 6, 1266
GluI GCNGC 1 cut(s) 1086
GsuI CTGGAG 3 cut(s) 164, 627, 696
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 209, 1064
HhaI GCGC 2 cut(s) 7, 1267
Hin1II CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
Hin6I GCGC 2 cut(s) 5, 1265
HinP1I GCGC 2 cut(s) 5, 1265
HinfI GANTC 7 cut(s) 78, 162, 428, 436, 659, 806, 818
HpaII CCGG 2 cut(s) 209, 1064
Hpy166II GTNNAC 4 cut(s) 203, 537, 631, 772
Hpy8I GTNNAC 4 cut(s) 203, 537, 631, 772
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 8 cut(s) 92, 112, 544, 644, 891, 1065, 1196, 1219
HpyCH4III ACNGT 4 cut(s) 249, 388, 415, 1144
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 8 cut(s) 332, 532, 581, 609, 668, 730, 778, 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 902, 1264
HpyF3I CTNAG 5 cut(s) 30, 227, 264, 312, 754
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
HspAI GCGC 2 cut(s) 5, 1265
KpnI GGTACC 1 cut(s) 387
Kzo9I GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
LguI GCTCTTC 2 cut(s) 196, 1035
LmnI GCTCC 2 cut(s) 242, 646
Lsp1109I GCAGC 1 cut(s) 1072
LweI GCATC 3 cut(s) 552, 1144, 1252
MaeI CTAG 3 cut(s) 540, 734, 1005
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 3 cut(s) 415, 680, 833
MalI GATC 7 cut(s) 49, 141, 288, 327, 455, 591, 984
MbiI CCGCTC 1 cut(s) 145
MboI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
MboII GAAGA 9 cut(s) 27, 88, 115, 183, 283, 611, 934, 1052, 1126
MfeI CAATTG 2 cut(s) 969, 1230
MflI RGATCY 3 cut(s) 47, 286, 453
MhlI GDGCHC 3 cut(s) 247, 643, 898
MluCI AATT 8 cut(s) 54, 502, 565, 602, 969, 1159, 1195, 1230
MlyI GAGTC 2 cut(s) 87, 827
MmeI TCCRAC 4 cut(s) 55, 153, 231, 504
MroXI GAANNNNTTC 1 cut(s) 785
MseI TTAA 5 cut(s) 219, 353, 950, 1035, 1248
MslI CAYNNNNRTG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 949
MspI CCGG 2 cut(s) 209, 1064
MspR9I CCNGG 1 cut(s) 1065
MunI CAATTG 2 cut(s) 969, 1230
Mva1269I GAATGC 1 cut(s) 265
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 313, 902, 1264
NciI CCSGG 1 cut(s) 1065
NdeII GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
NlaIII CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
NlaIV GGNNCC 3 cut(s) 385, 1022, 1272
NmeAIII GCCGAG 2 cut(s) 38, 66
NmuCI GTSAC 1 cut(s) 833
NspI RCATGY 1 cut(s) 226
PciSI GCTCTTC 2 cut(s) 196, 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 5 cut(s) 162, 428, 436, 659, 806
PkrI GCNGC 1 cut(s) 1087
PleI GAGTC 2 cut(s) 86, 826
PpsI GAGTC 2 cut(s) 86, 826
PshBI ATTAAT 1 cut(s) 1248
PsiI TTATAA 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 643
PspEI GGTNACC 1 cut(s) 680
PspN4I GGNNCC 3 cut(s) 385, 1022, 1272
PspPI GGNCC 3 cut(s) 175, 374, 1021
PsuI RGATCY 3 cut(s) 47, 286, 453
RsaI GTAC 4 cut(s) 385, 495, 747, 773
RsaNI GTAC 4 cut(s) 384, 494, 746, 772
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 643
SapI GCTCTTC 2 cut(s) 196, 1035
SaqAI TTAA 5 cut(s) 219, 353, 950, 1035, 1248
SatI GCNGC 1 cut(s) 1086
Sau3AI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
Sau96I GGNCC 3 cut(s) 175, 374, 1021
SchI GAGTC 2 cut(s) 87, 827
ScrFI CCNGG 1 cut(s) 1065
SduI GDGCHC 3 cut(s) 247, 643, 898
SfaNI GCATC 3 cut(s) 552, 1144, 1252
SinI GGWCC 3 cut(s) 175, 374, 1021
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 397, 715, 949
SmoI CTYRAG 3 cut(s) 397, 715, 949
Sse9I AATT 8 cut(s) 54, 502, 565, 602, 969, 1159, 1195, 1230
SsiI CCGC 5 cut(s) 23, 45, 143, 157, 470
SspMI CTAG 3 cut(s) 540, 734, 1005
SstI GAGCTC 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 1063
TaaI ACNGT 4 cut(s) 249, 388, 415, 1144
TaiI ACGT 1 cut(s) 762
TaqI TCGA 1 cut(s) 52
TasI AATT 8 cut(s) 54, 502, 565, 602, 969, 1159, 1195, 1230
TatI WGTACW 2 cut(s) 493, 771
TfiI GAWTC 5 cut(s) 162, 428, 436, 659, 806
Tru1I TTAA 5 cut(s) 219, 353, 950, 1035, 1248
Tru9I TTAA 5 cut(s) 219, 353, 950, 1035, 1248
TscAI CASTG 2 cut(s) 252, 354
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 1 cut(s) 1085
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 9 cut(s) 441, 464, 663, 891, 1053, 1070, 1133, 1178, 1238
TspGWI ACGGA 2 cut(s) 229, 698
TspRI CASTG 2 cut(s) 252, 354
Vha464I CTTAAG 1 cut(s) 949
VpaK11BI GGWCC 3 cut(s) 175, 374, 1021
VspI ATTAAT 1 cut(s) 1248
XapI RAATTY 3 cut(s) 54, 502, 602
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 2 cut(s) 692, 1096
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 3 cut(s) 540, 734, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.