RchiOBHm_Chr3g0459951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000267
Physical Location & Seq
Forward (+)
8213762 .. 8214415
654 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42649

Sequence Viewer

Length: 414 bp
ATGATGGGGGAGGCTTCTCGCTGGGGCAAGGGAGGTGGTGGTGTGATGGCTACAAGCCTGTGTGCCTTGTCTGGCCTGATGAGGAGACGTTCTGACTGCTTCGTCAAATGGACGAATCCTCTTAGTAGCAGGATGAAACCAAGTGTCGCCGGATTTATTTCCGTGCAGCAACATAGTTGGAAAGCTATGCTATTTGTAATGATGCTTCTTCATGATAGAGTTATATTTCTGTTATGTTACCGCCTTGTCAAAGCGAATAGAGTAGCCAGTAGTGCACTCATAGCTAATTGCTGTATGTTAGAATACACAGGTCTGGTGGAGACTCCTGTTATTATTCGGGCTGTTCTCTCAATGCTTATTGTAACTTGGGGTTTAGGCACCATGTTCCCCCATTGTATTCTGCAGTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.26

Weight (kDa)

9.81

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 1 cut(s) 241
AluBI AGCT 2 cut(s) 185, 284
AluI AGCT 2 cut(s) 185, 284
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 79, 314
Alw44I GTGCAC 1 cut(s) 273
AoxI GGCC 1 cut(s) 73
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 79, 314
BfmI CTRYAG 1 cut(s) 401
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 379
BmsI GCATC 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 79, 314
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 277
BspACI CCGC 1 cut(s) 241
BspANI GGCC 1 cut(s) 75
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 377
BsrI ACTGG 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 138
BstMAI GTCTC 2 cut(s) 79, 314
BstMWI GCNNNNNNNGC 2 cut(s) 272, 281
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 138
CciI TCATGA 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 2 cut(s) 212, 382
CviJI RGCY 8 cut(s) 14, 50, 57, 75, 185, 266, 284, 341
CviKI_1 RGCY 8 cut(s) 14, 50, 57, 75, 185, 266, 284, 341
DdeI CTNAG 1 cut(s) 122
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 215, 385
FaiI YATR 8 cut(s) 174, 188, 213, 224, 235, 281, 296, 383
FatI CATG 2 cut(s) 211, 381
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 167
GsaI CCCAGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 150
Hin1II CATG 2 cut(s) 215, 385
HinfI GANTC 2 cut(s) 115, 322
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 166, 275, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 281
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 2 cut(s) 215, 385
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 192
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 2 cut(s) 236, 361
MboII GAAGA 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 4 cut(s) 4, 26, 75, 129
MseI TTAA 1 cut(s) 412
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 272, 281
NlaIII CATG 2 cut(s) 215, 385
NlaIV GGNNCC 1 cut(s) 379
PagI TCATGA 1 cut(s) 211
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 379
PstI CTGCAG 1 cut(s) 405
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 1 cut(s) 167
SchI GAGTC 1 cut(s) 316
SduI GDGCHC 1 cut(s) 277
SetI ASST 5 cut(s) 37, 91, 187, 286, 313
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 401
Sse9I AATT 1 cut(s) 286
SsiI CCGC 1 cut(s) 241
TaiI ACGT 1 cut(s) 91
TasI AATT 1 cut(s) 286
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 3 cut(s) 149, 200, 398
TspGWI ACGGA 1 cut(s) 151
VneI GTGCAC 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.