Rroxscaffold_2G00111130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000267
Physical Location & Seq
Reverse (-)
35678623 .. 35681482
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111130.1

Sequence Viewer

Length: 267 bp
ATGGCCGGGGTTTGGCTCGGGGATGGAAGTTGGTGGCTTCGCTTGGATCGTGGCCGAGTTAACGGATCCGATTCTTCTCTTCGTCGATTGTGGGTGGGAGCCGGAATGGACTTCGGCGTGGTGCGATTTGCCGGTTTTGCAGGTTTCTCGGCTAAGGATGGTTGCTTGGCGAAAAGAAGTAGAGAGAAACAAGACTCTTCTGTTAATTGTTATGAAGATGAAATTGCACGCATTGGTGATAACAAGCTAGGGCTCTATAGGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.82

Weight (kDa)

9.5

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AclWI GGATC 3 cut(s) 54, 60, 73
AcoI YGGCCR 2 cut(s) 3, 52
AfiI CCNNNNNNNGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 3 cut(s) 54, 60, 73
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 2 cut(s) 3, 52
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 17
BamHI GGATCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 255
BccI CCATC 2 cut(s) 17, 152
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 7
BmeT110I CYCGRG 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 67, 100
BmrFI CCNGG 1 cut(s) 7
Bpu10I CCTNAGC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 28, 163
BseLI CCNNNNNNNGG 1 cut(s) 12
BshFI GGCC 2 cut(s) 5, 54
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 3 cut(s) 6, 102, 132
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 5, 54
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 46, 65
BspANI GGCC 2 cut(s) 5, 54
BspLI GGNNCC 2 cut(s) 67, 100
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 3 cut(s) 54, 60, 73
BsrFI RCCGGY 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 46, 65
Bst6I CTCTTC 2 cut(s) 84, 202
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 28, 163
BstKTI GATC 2 cut(s) 49, 68
BstMBI GATC 2 cut(s) 46, 65
BstMWI GCNNNNNNNGC 2 cut(s) 137, 259
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 2 cut(s) 5, 54
BtsCI GGATG 2 cut(s) 28, 163
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 131
CviJI RGCY 8 cut(s) 5, 16, 37, 54, 101, 152, 247, 253
CviKI_1 RGCY 8 cut(s) 5, 16, 37, 54, 101, 152, 247, 253
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 48, 67
DpnII GATC 2 cut(s) 46, 65
EaeI YGGCCR 2 cut(s) 3, 52
Eam1104I CTCTTC 2 cut(s) 84, 202
EarI CTCTTC 2 cut(s) 84, 202
Eco24I GRGCYC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 255
FaiI YATR 2 cut(s) 213, 258
FokI GGATG 2 cut(s) 35, 170
FriOI GRGCYC 1 cut(s) 255
FspBI CTAG 1 cut(s) 248
HaeIII GGCC 2 cut(s) 5, 54
HapII CCGG 3 cut(s) 6, 102, 132
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 2 cut(s) 71, 194
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 3 cut(s) 6, 102, 132
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 140, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 259
HpyF3I CTNAG 1 cut(s) 153
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 46, 65
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 4 cut(s) 19, 115, 126, 145
MaeI CTAG 1 cut(s) 248
MalI GATC 2 cut(s) 48, 67
MboI GATC 2 cut(s) 46, 65
MboII GAAGA 4 cut(s) 66, 71, 189, 227
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 205, 222
MlyI GAGTC 1 cut(s) 188
MseI TTAA 2 cut(s) 60, 204
MspI CCGG 3 cut(s) 6, 102, 132
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 137, 259
NciI CCSGG 1 cut(s) 7
NdeII GATC 2 cut(s) 46, 65
NlaIV GGNNCC 2 cut(s) 67, 100
NmeAIII GCCGAG 2 cut(s) 80, 128
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 1 cut(s) 71
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 67, 100
PsuI RGATCY 1 cut(s) 65
SaqAI TTAA 2 cut(s) 60, 204
Sau3AI GATC 2 cut(s) 46, 65
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 255
SetI ASST 2 cut(s) 145, 249
SfcI CTRYAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 205, 222
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 5
TaqI TCGA 1 cut(s) 85
TasI AATT 2 cut(s) 205, 222
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 60, 204
Tru9I TTAA 2 cut(s) 60, 204
TspDTI ATGAA 2 cut(s) 228, 234
TspGWI ACGGA 1 cut(s) 78
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.