Rh4CG044400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000267
Physical Location & Seq
Forward (+)
8887424 .. 8887898
475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG044400.1

Sequence Viewer

Length: 417 bp
ATGGTTTCTTGGCGGTGGTTGGGTCTCGGAGTTAGAGCTCGGATCTGGTTTTGGGGTTGGACGGGGATCTGCAGGTGCGTTTCTGTGTTGTTTCTGGGGCAGTTGGAGTGGCTCTGGGACACGGACGGCTGGCGGCGAACCGTGGAGGCTCTGCGGCAACTGGGGGCTGGGGGACGGTCGCTGAGATCTCGATCTAGTCGGTTCTGGATCGGGTTTCGGGCACCAATCGGGTTGAAGAAGGACCTGCACAGTGTCGTGGTGAGGCGGCGGTGCAGGGTTGCTGCGCGGCGGCGTCGTGCTACTTGGGGGCGATCTGGTGCCGGCGCTGGCAGATCGTTGTTCGCTTGGTGGGCGTCTGCATTGGGCCTATGGGAGAGATGGTGGATGGGCCGGGCTTTGTTGTTGCTTTGTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.16

Weight (kDa)

12.0

Isoelectric Point (pI)

67.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 63
Acc36I ACCTGC 2 cut(s) 63, 252
AccB1I GGYRCC 2 cut(s) 220, 317
AccII CGCG 1 cut(s) 286
AciI CCGC 7 cut(s) 13, 133, 154, 265, 268, 286, 289
AclWI GGATC 3 cut(s) 50, 74, 215
AcyI GRCGYC 2 cut(s) 292, 353
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 3 cut(s) 50, 74, 215
AoxI GGCC 2 cut(s) 364, 388
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 2 cut(s) 286, 326
AspS9I GGNCC 3 cut(s) 241, 364, 388
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 2 cut(s) 220, 317
BanII GRGCYC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 372, 379
BceAI ACGGC 1 cut(s) 142
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 2 cut(s) 63, 252
BglII AGATCT 1 cut(s) 185
BisI GCNGC 6 cut(s) 134, 155, 266, 282, 287, 290
BlsI GCNGC 6 cut(s) 135, 156, 267, 283, 288, 291
Bme1390I CCNGG 1 cut(s) 392
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 241, 364, 388
BmiI GGNNCC 2 cut(s) 222, 319
BmrFI CCNGG 1 cut(s) 392
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 190
BsaHI GRCGYC 2 cut(s) 292, 353
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 390
BseJI GATNNNNATC 1 cut(s) 190
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 167
BsgI GTGCAG 2 cut(s) 230, 292
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 366, 390
BshNI GGYRCC 2 cut(s) 220, 317
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 2 cut(s) 321, 391
BslFI GGGAC 2 cut(s) 131, 186
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 131, 186
BsnI GGCC 2 cut(s) 366, 390
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 40, 223
Bsp143I GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
BspACI CCGC 7 cut(s) 13, 133, 154, 265, 268, 286, 289
BspANI GGCC 2 cut(s) 366, 390
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 222, 319
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 2 cut(s) 63, 252
BspPI GGATC 3 cut(s) 50, 74, 215
BspT107I GGYRCC 2 cut(s) 220, 317
BspTNI GGTCTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
BssNI GRCGYC 2 cut(s) 292, 353
Bst4CI ACNGT 3 cut(s) 142, 177, 251
BstACI GRCGYC 2 cut(s) 292, 353
BstC8I GCNNGC 3 cut(s) 131, 322, 328
BstDEI CTNAG 1 cut(s) 182
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 390
BstFNI CGCG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 286, 326
BstKTI GATC 7 cut(s) 45, 69, 188, 194, 210, 314, 335
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 390
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 3 cut(s) 42, 66, 185
BstYI RGATCY 3 cut(s) 42, 66, 185
BsuRI GGCC 2 cut(s) 366, 390
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 2 cut(s) 63, 252
Cac8I GCNNGC 3 cut(s) 131, 322, 328
CfoI GCGC 2 cut(s) 286, 326
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 3 cut(s) 241, 364, 388
CseI GACGC 2 cut(s) 281, 342
CviJI RGCY 8 cut(s) 38, 112, 129, 149, 167, 366, 390, 395
CviKI_1 RGCY 8 cut(s) 38, 112, 129, 149, 167, 366, 390, 395
DdeI CTNAG 1 cut(s) 182
DpnI GATC 7 cut(s) 44, 68, 187, 193, 209, 313, 334
DpnII GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
Ecl136II GAGCTC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 40
FaiI YATR 1 cut(s) 370
FaqI GGGAC 2 cut(s) 131, 186
Fnu4HI GCNGC 6 cut(s) 134, 155, 266, 282, 287, 290
FokI GGATG 1 cut(s) 397
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 6 cut(s) 134, 155, 266, 282, 287, 290
FspBI CTAG 1 cut(s) 195
GlaI GCGC 2 cut(s) 285, 325
GluI GCNGC 6 cut(s) 134, 155, 266, 282, 287, 290
GsaI CCCAGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 2 cut(s) 366, 390
HapII CCGG 2 cut(s) 321, 391
HgaI GACGC 2 cut(s) 281, 342
HhaI GCGC 2 cut(s) 286, 326
Hin1I GRCGYC 2 cut(s) 292, 353
Hin6I GCGC 2 cut(s) 284, 324
HinP1I GCGC 2 cut(s) 284, 324
HpaII CCGG 2 cut(s) 321, 391
HphI GGTGA 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 29, 42
Hpy188III TCNNGA 2 cut(s) 189, 205
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 3 cut(s) 142, 177, 251
HpyCH4V TGCA 4 cut(s) 72, 247, 273, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 182
Hsp92I GRCGYC 2 cut(s) 292, 353
HspAI GCGC 2 cut(s) 284, 324
KroI GCCGGC 1 cut(s) 320
KroNI GCCGGC 1 cut(s) 322
Kzo9I GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
Lsp1109I GCAGC 1 cut(s) 268
MaeI CTAG 1 cut(s) 195
MalI GATC 7 cut(s) 44, 68, 187, 193, 209, 313, 334
MboI GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
MboII GAAGA 1 cut(s) 247
MflI RGATCY 3 cut(s) 42, 66, 185
MhlI GDGCHC 2 cut(s) 40, 223
MmeI TCCRAC 2 cut(s) 38, 84
MnlI CCTC 2 cut(s) 139, 255
MroNI GCCGGC 1 cut(s) 320
MspI CCGG 2 cut(s) 321, 391
MspR9I CCNGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 350
NaeI GCCGGC 1 cut(s) 322
NciI CCSGG 1 cut(s) 392
NdeII GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
NgoMIV GCCGGC 1 cut(s) 320
NlaIV GGNNCC 2 cut(s) 222, 319
PaqCI CACCTGC 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 322
PkrI GCNGC 6 cut(s) 135, 156, 267, 283, 288, 291
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 222, 319
PspPI GGNCC 3 cut(s) 241, 364, 388
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 3 cut(s) 42, 66, 185
SacI GAGCTC 1 cut(s) 40
SatI GCNGC 6 cut(s) 134, 155, 266, 282, 287, 290
Sau3AI GATC 7 cut(s) 42, 66, 185, 191, 207, 311, 332
Sau96I GGNCC 3 cut(s) 241, 364, 388
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 2 cut(s) 40, 223
SetI ASST 3 cut(s) 40, 77, 246
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 241
SsiI CCGC 7 cut(s) 13, 133, 154, 265, 268, 286, 289
SspMI CTAG 1 cut(s) 195
SstI GAGCTC 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 390
TaaI ACNGT 3 cut(s) 142, 177, 251
TaqI TCGA 1 cut(s) 190
TauI GCSGC 5 cut(s) 136, 157, 268, 289, 292
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 241
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.