RchiOBHm_Chr4g0422711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Forward (+)
48292797 .. 48293993
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39215

Sequence Viewer

Length: 489 bp
ATGTCATTGGGTTCTGTTTGGTCAGCCTGGTTTCGTAGGTTTGTTGTTTTATTTTATTTCTATTATTTAGTTGTTCATGGCCTTAGGGCTTTAATAATTTCCTACCAATTTTTGGTAGAGATAGGTGGGCATTGTCTTGATATGTACACTCAGCGTGTCTTGTCTGTTCTAATGAGTCGGCGAGTTCCTTGCTTTGTCAAATGGTTGCAGCCTCCTAGTGACATGATGAAATTAAGTGTCACTGGTAGTATCCTCCGGTGGCAACATAGTGGGAAAGTTGGTATTCTTGGTATATGGCTTCACGTGAGCAGTATCTTTCCGGTATATCACCACAACTGTAAAGCAAATGGAGTAGCCAATGATGCACTCTTTGCTAAATGGTGCTTGTTAGAATACATAGGTTATATAGAGAATCCTGATATTATTTTGGGATGTTCTCTTGAAACTTATTGTAATGTTGGGTTTAGGAAAAATGTCCCCCTGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.65

Weight (kDa)

9.1

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 487
AccB7I CCANNNNNTGG 1 cut(s) 112
AcvI CACGTG 1 cut(s) 304
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 1 cut(s) 443
AjnI CCWGG 1 cut(s) 26
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 320
AxyI CCTNAGG 1 cut(s) 83
BbrPI CACGTG 1 cut(s) 304
BbvI GCAGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 1 cut(s) 28
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 1 cut(s) 216
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 304
BsaWI WCCGGW 2 cut(s) 255, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 247
Bse21I CCTNAGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 256, 320
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 144
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 163
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 83, 150
BstF5I GGATG 1 cut(s) 437
BstMWI GCNNNNNNNGC 2 cut(s) 362, 371
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 83
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 240
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 77, 223
CviJI RGCY 6 cut(s) 26, 81, 89, 211, 298, 356
CviKI_1 RGCY 6 cut(s) 26, 81, 89, 211, 298, 356
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 83, 150
Eco72I CACGTG 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 26
FaeI CATG 2 cut(s) 80, 226
FaqI GGGAC 1 cut(s) 461
FatI CATG 2 cut(s) 76, 222
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 444
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 256, 320
Hin1II CATG 2 cut(s) 80, 226
HinfI GANTC 2 cut(s) 175, 412
HpaII CCGG 2 cut(s) 256, 320
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 147
Hpy188III TCNNGA 3 cut(s) 137, 416, 440
Hpy8I GTNNAC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 208, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 371
HpyF3I CTNAG 2 cut(s) 83, 150
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 2 cut(s) 80, 226
LpnPI CCDG 6 cut(s) 13, 40, 228, 269, 333, 429
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 218, 238
MluCI AATT 3 cut(s) 96, 107, 230
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 2 cut(s) 222, 263
MseI TTAA 2 cut(s) 92, 233
MspI CCGG 2 cut(s) 256, 320
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 362, 371
NlaIII CATG 2 cut(s) 80, 226
NmuCI GTSAC 2 cut(s) 218, 238
PfeI GAWTC 1 cut(s) 412
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 183
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 1 cut(s) 183
Ppu21I YACGTR 1 cut(s) 304
PsiI TTATAA 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 26
PspCI CACGTG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 26
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 2 cut(s) 92, 233
SatI GCNGC 1 cut(s) 209
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 28
SetI ASST 4 cut(s) 41, 127, 306, 403
SfaNI GCATC 1 cut(s) 352
Sse9I AATT 3 cut(s) 96, 107, 230
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 306
TasI AATT 3 cut(s) 96, 107, 230
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 2 cut(s) 92, 233
Tru9I TTAA 2 cut(s) 92, 233
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 218, 238
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 2 cut(s) 218, 238
TspDTI ATGAA 2 cut(s) 65, 242
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 112
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.