RchiOBHm_Chr2g0140171

NDH shuttles electrons from NAD(P)H plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000267
Physical Location & Seq
Forward (+)
57527028 .. 57527555
528 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51065

Sequence Viewer

Length: 441 bp
ATGTTTTCTATGGTAACTGGGTTAATTAATTATGGTCAACAAACAGTGTGGGCTGCAAGGTGCATTGGTCAAAGTTTCATGATTACTTTATCTCACACAAATAGTTTACCACGTGGCTTTATGCTGGCAATAAGTCCCTACCATAATGGGGTAGGGCGACGTGGGCTCTGTCCCGGACTGCACACCTTGTGTGCCTTGTCTGCCCTAGGTAGGCGGCGAGTTCCCAAATGGTCGCAACCTCCTAGTGGCAGGATGAAACTAAGTGTTATCGGACGCGTTTTCGGGTGGCAACATAGTGGGAAAGCTGATCTTATTAGTATTATATGGCTTCGAGTAAGCATTTACTTTCCGGTATGTCACCACCTCTGTAAAGCGAATAGAATAGCCAAAAGTGCACTCTTCGCTATTTGGTGCATGGTAGAATACATATTTTTTTGTTGA

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

10.32

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AciI CCGC 1 cut(s) 214
AcvI CACGTG 1 cut(s) 113
AdeI CACNNNGTG 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 148, 210, 245
AflIII ACRYGT 1 cut(s) 274
AjiI CACGTC 1 cut(s) 161
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 397
Alw44I GTGCAC 1 cut(s) 393
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 53
AseI ATTAAT 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 350
AvrII CCTAGG 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 174
BfaI CTAG 2 cut(s) 206, 243
BisI GCNGC 2 cut(s) 54, 215
BlnI CCTAGG 1 cut(s) 205
BlsI GCNGC 2 cut(s) 55, 216
Bme1390I CCNGG 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 210, 245
Bse1I ACTGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 148, 210, 245
BseNI ACTGG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 2 cut(s) 174, 350
BslFI GGGAC 2 cut(s) 120, 156
BslI CCNNNNNNNGG 3 cut(s) 148, 210, 245
BsmFI GGGAC 2 cut(s) 120, 156
Bsp1286I GDGCHC 2 cut(s) 168, 397
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 214
BspFNI CGCG 1 cut(s) 276
BspHI TCATGA 1 cut(s) 78
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 163, 200, 392, 401
BstSCI CCNGG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 397
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 40
BtrI CACGTC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 78
CseI GACGC 1 cut(s) 282
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 2 cut(s) 79, 415
CviJI RGCY 6 cut(s) 53, 117, 166, 305, 328, 386
CviKI_1 RGCY 6 cut(s) 53, 117, 166, 305, 328, 386
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraIII CACNNNGTG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Eco130I CCWWGG 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 82, 418
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 2 cut(s) 120, 156
FatI CATG 2 cut(s) 78, 414
Fnu4HI GCNGC 2 cut(s) 54, 215
FokI GGATG 1 cut(s) 265
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 54, 215
FspBI CTAG 2 cut(s) 206, 243
GluI GCNGC 2 cut(s) 54, 215
HapII CCGG 2 cut(s) 174, 350
HgaI GACGC 1 cut(s) 282
Hin1II CATG 2 cut(s) 82, 418
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HpaII CCGG 2 cut(s) 174, 350
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 38, 107, 395
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 38, 107, 395
Hpy99I CGWCG 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 112, 160
HpyCH4V TGCA 5 cut(s) 56, 63, 181, 395, 414
HpyF10VI GCNNNNNNNGC 4 cut(s) 163, 200, 392, 401
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 112, 160
Hsp92II CATG 2 cut(s) 82, 418
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 3, 110, 187, 235, 363
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 2 cut(s) 206, 243
MaeII ACGT 2 cut(s) 112, 160
MaeIII GTNAC 2 cut(s) 13, 356
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 1 cut(s) 391
MhlI GDGCHC 2 cut(s) 168, 397
MluCI AATT 2 cut(s) 24, 28
MluI ACGCGT 1 cut(s) 274
MnlI CCTC 2 cut(s) 249, 374
MseI TTAA 2 cut(s) 23, 27
MspI CCGG 2 cut(s) 174, 350
MspR9I CCNGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 163, 200, 392, 401
NciI CCSGG 1 cut(s) 174
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 82, 418
NmuCI GTSAC 1 cut(s) 356
PacI TTAATTAA 1 cut(s) 27
PagI TCATGA 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 2 cut(s) 55, 216
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 113
PshBI ATTAAT 1 cut(s) 27
PspCI CACGTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 23, 27
SatI GCNGC 2 cut(s) 54, 215
Sau3AI GATC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 168, 397
SetI ASST 8 cut(s) 62, 115, 163, 188, 211, 241, 307, 366
Sse9I AATT 2 cut(s) 24, 28
SsiI CCGC 1 cut(s) 214
SspMI CTAG 2 cut(s) 206, 243
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 115, 163
TaqI TCGA 1 cut(s) 331
TasI AATT 2 cut(s) 24, 28
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 23, 27
Tru9I TTAA 2 cut(s) 23, 27
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 67, 269
TspRI CASTG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 393
VspI ATTAAT 1 cut(s) 27
XmaJI CCTAGG 1 cut(s) 205
XspI CTAG 2 cut(s) 206, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.