Rorug06G0032700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000267
Physical Location & Seq
Forward (+)
4025168 .. 4028647
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0032700.1

Sequence Viewer

Length: 1740 bp
ATGGAGGAGGAGACATTTTTTGTTGGTCAAGAGTTCCCTGATGTAAAGGCGTTCAGGAATGCGATTAAAGAAGCTGCAATTGCCCAACACTTTGAGCTTCGTATAATAAAAAGTGACCTTATCCGGTACTTTGCAAAGTGTGCAGCGGAGGCTTGTCCGTGGCGCATTCGTGCCGTGAAGCTTCCGAATGCGCCGACATTTGCGATAAGAAGCCTTGAAGGGAAGCACACTTGCGGTAGAAATGCGCACAACGGGCACCATCAGGCGTCTATTGATTGGATTGTTAGTTTTATAGAACAACGCCTGCGGGATAACATTAATTACAAGCCGAAGGATATATTGCATGATATCCATCAGCAGTATGGGATTACCATACCTTATAAGCAGGCTTGGCGTGCAAAGGAACGGGGACTTGCTGCGATATATGGATCTTCCGAGGAAGGGTATTGCCTTCTTCCTTCATACTGTGAAGAAATAAAGAAGACCAACCCTGGAAGCATCGCTGAGGTGTTTACTACTGGTCCAGATCACCGGTTCCAGCGGTTATTTGTTTCCTTTTATTCATCCATTTATGGTTTTCTGAATGGTTGCTTGCCTGTTATTGGGCTTGGTGGAATCCATCTTAAGAGCAAATATCTCGGCACCTTACTCTCTGCAACTTCTTTTGATGCTGAGGGGGGTTTATTTCCACTTGCATTTGGTGTTGTTGATGAAGAAAATGATGAGAGCTGGATGTGGTTCTTGTCAGAGTTGCACAAGGCACTAGAGATGAACACCCAGAATATGCCACAGCTCACATTTATATCTGATACACAGAAGGGCATTGCAGACGCAGTGAGAAGGAAATTCCCAACTTCTGTACATGATATTTGCATTCGCCACTTGAGTGAAAGCATTGGAAAAGAATTCAAGAACCCAAGGCTTGTTCATCTGTTATGGAAAGCTGCACAAGCCACTACTACGATTGGTTTCAAAGATAAAATGGCTGAAATAGAGGAGGTTTCTTTAGATGCTGCAAAATGGCTGCAACAATTTCATCCTTCCCGCTGGGCATTTGTGTATTTTGAAGGAACACATTATGGTCATTTCTCATCAAATATTGAGGAGTTCAATAAATGGATTCTGGAAGCTCGTGAATTGCCCATAATCCAGGTGATTGAGAGGATTCATGGTAAATTGATGACGGAGTTTGAAGAACGGCGTAAGCAAAGTAATTCTTGGTTTTCCTTACTTGCTCCATCTGCTGAGAACTATATTTTAGAAGCCATCAGCCGTGCATCCACATATCAGGTCCTTAGATCTGATCAAGTTGAATTTGAGGTCCTCTCAGCTGATCGATCAGACATAGTGAATATTGGAACCCATTGTTGTTCCTGCCGCGAATGGCAGCTATATGGTTTACCATGTTCCCATGCTGTTGCTGCCCTCATCTCATGTCAGAAAGATGTATATGCCTTTACAGAGAAATGTTTTACTGCAGCAAGTTACCGTGAGACGTATGCTGGAGAGATATATCCCATTGAAGCAAAACCCCGATGGGTAAAGACAGAAGAGGCTGCAATGACTGATGATGATGATAATCAAGTTTTTGTGCGACCTCCTAAGATTCGTAGACTGCCAGGGCGCCCCGAAAAGAAACGGGTTTGTGTAGAAGACATTAATCCTGGCAAACATACTGTACGTTGCAGTCTCTGTAATCAGACCGGACATTATAAGACAACCTGCAAAGAGAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

579

Amino Acids

66.34

Weight (kDa)

6.87

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 6 - 69 5.3e-23 MuDR family transposase
MULE PF10551 201 - 296 5.6e-19 MULE transposase domain
SWIM PF04434 450 - 479 1.5e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 381, 1713
Acc16I TGCGCA 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 1730
AccB1I GGYRCC 3 cut(s) 255, 641, 1623
AccI GTMKAC 1 cut(s) 1612
AccII CGCG 1 cut(s) 1380
AciI CCGC 6 cut(s) 146, 234, 307, 541, 1045, 1378
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 3 cut(s) 845, 905, 1313
AcyI GRCGYC 2 cut(s) 266, 1624
AfaI GTAC 3 cut(s) 128, 861, 1680
AfiI CCNNNNNNNGG 2 cut(s) 441, 602
AflII CTTAAG 1 cut(s) 623
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 8 cut(s) 218, 910, 973, 1067, 1111, 1193, 1313, 1523
AjnI CCWGG 4 cut(s) 490, 1149, 1618, 1663
AleI CACNNNNGTG 1 cut(s) 885
AluBI AGCT 9 cut(s) 74, 97, 181, 729, 793, 944, 1130, 1331, 1390
AluI AGCT 9 cut(s) 74, 97, 181, 729, 793, 944, 1130, 1331, 1390
Alw26I GTCTC 3 cut(s) 5, 1487, 1694
AlwI GGATC 1 cut(s) 436
AlwNI CAGNNNCTG 1 cut(s) 1692
ApoI RAATTY 3 cut(s) 845, 905, 1313
AseI ATTAAT 2 cut(s) 318, 1659
AsiGI ACCGGT 1 cut(s) 531
AspLEI GCGC 4 cut(s) 165, 193, 247, 1626
AspS9I GGNCC 3 cut(s) 521, 1291, 1321
AsuHPI GGTGA 2 cut(s) 521, 1165
AvaII GGWCC 3 cut(s) 521, 1291, 1321
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 3 cut(s) 255, 641, 1623
BauI CACGAG 1 cut(s) 1131
BbsI GAAGAC 2 cut(s) 488, 1659
BbvCI CCTCAGC 2 cut(s) 504, 672
BccI CCATC 6 cut(s) 267, 360, 627, 1246, 1274, 1530
BceAI ACGGC 3 cut(s) 158, 1214, 1257
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BciT130I CCWGG 4 cut(s) 492, 1151, 1620, 1665
BclI TGATCA 1 cut(s) 1303
BcoDI GTCTC 3 cut(s) 5, 1487, 1694
BfaI CTAG 1 cut(s) 764
BfmI CTRYAG 1 cut(s) 1476
BfoI RGCGCY 1 cut(s) 1627
BfrI CTTAAG 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 1730
BglII AGATCT 1 cut(s) 1298
Bme1390I CCNGG 4 cut(s) 492, 1151, 1620, 1665
Bme18I GGWCC 3 cut(s) 521, 1291, 1321
BmgT120I GGNCC 3 cut(s) 521, 1291, 1321
BmiI GGNNCC 5 cut(s) 257, 536, 643, 1360, 1625
BmrFI CCNGG 4 cut(s) 492, 1151, 1620, 1665
BmsI GCATC 4 cut(s) 507, 658, 1000, 1286
BpiI GAAGAC 2 cut(s) 488, 1659
BplI GAGNNNNNCTC 2 cut(s) 1310, 1342
BpmI CTGGAG 1 cut(s) 1524
Bpu10I CCTNAGC 2 cut(s) 504, 672
BpuEI CTTGAG 1 cut(s) 904
Bsa29I ATCGAT 1 cut(s) 1336
BsaBI GATNNNNATC 2 cut(s) 351, 1578
BsaHI GRCGYC 2 cut(s) 266, 1624
BsaJI CCNNGG 5 cut(s) 158, 435, 490, 917, 1619
BsaWI WCCGGW 3 cut(s) 123, 531, 1703
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 602
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 2 cut(s) 822, 1566
Bse8I GATNNNNATC 2 cut(s) 351, 1578
BseBI CCWGG 4 cut(s) 492, 1151, 1620, 1665
BseCI ATCGAT 1 cut(s) 1336
BseDI CCNNGG 5 cut(s) 158, 435, 490, 917, 1619
BseGI GGATG 4 cut(s) 563, 738, 1036, 1277
BseJI GATNNNNATC 2 cut(s) 351, 1578
BseLI CCNNNNNNNGG 2 cut(s) 441, 602
BseMI GCAATG 2 cut(s) 822, 1566
BseMII CTCAG 4 cut(s) 495, 663, 1236, 1341
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 4 cut(s) 20, 23, 1010, 1118
BseSI GKGCMC 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 1047
BsgI GTGCAG 2 cut(s) 162, 930
Bsh1236I CGCG 1 cut(s) 1380
BshNI GGYRCC 3 cut(s) 255, 641, 1623
BshTI ACCGGT 1 cut(s) 531
BshVI ATCGAT 1 cut(s) 1336
BsiSI CCGG 3 cut(s) 124, 532, 1704
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 441, 602
BsmAI GTCTC 3 cut(s) 5, 1487, 1694
BsmBI CGTCTC 1 cut(s) 1487
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 4 cut(s) 64, 165, 193, 873
Bsp1286I GDGCHC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
BspACI CCGC 6 cut(s) 146, 234, 307, 541, 1045, 1378
BspCNI CTCAG 4 cut(s) 496, 664, 1237, 1340
BspDI ATCGAT 1 cut(s) 1336
BspFNI CGCG 1 cut(s) 1380
BspLI GGNNCC 5 cut(s) 257, 536, 643, 1360, 1625
BspMAI CTGCAG 1 cut(s) 1480
BspMI ACCTGC 1 cut(s) 1730
BspPI GGATC 1 cut(s) 436
BspT107I GGYRCC 3 cut(s) 255, 641, 1623
BspTI CTTAAG 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 822, 1566
BsrFI RCCGGY 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 5 cut(s) 158, 435, 490, 917, 1619
BssMI GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
BssNI GRCGYC 2 cut(s) 266, 1624
BssSI CACGAG 1 cut(s) 1131
BssT1I CCWWGG 1 cut(s) 917
Bst2BI CACGAG 1 cut(s) 1131
Bst2UI CCWGG 4 cut(s) 492, 1151, 1620, 1665
Bst4CI ACNGT 3 cut(s) 467, 1490, 1678
Bst6I CTCTTC 1 cut(s) 1545
BstACI GRCGYC 2 cut(s) 266, 1624
BstAFI CTTAAG 1 cut(s) 623
BstAPI GCANNNNNTGC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 305, 387, 396, 593
BstDEI CTNAG 6 cut(s) 504, 672, 1245, 1295, 1327, 1602
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 4 cut(s) 563, 738, 1036, 1277
BstFNI CGCG 1 cut(s) 1380
BstH2I RGCGCY 1 cut(s) 1627
BstHHI GCGC 4 cut(s) 165, 193, 247, 1626
BstKTI GATC 6 cut(s) 431, 529, 1301, 1306, 1336, 1340
BstMAI GTCTC 3 cut(s) 5, 1487, 1694
BstMBI GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
BstMWI GCNNNNNNNGC 9 cut(s) 80, 140, 149, 253, 391, 395, 950, 1241, 1421
BstNI CCWGG 4 cut(s) 492, 1151, 1620, 1665
BstSCI CCNGG 4 cut(s) 490, 1149, 1618, 1663
BstSFI CTRYAG 1 cut(s) 1476
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 1380
BstV2I GAAGAC 2 cut(s) 488, 1659
BstX2I RGATCY 2 cut(s) 428, 1298
BstYI RGATCY 2 cut(s) 428, 1298
Bsu15I ATCGAT 1 cut(s) 1336
BsuTUI ATCGAT 1 cut(s) 1336
BtgI CCRYGG 1 cut(s) 158
BtgZI GCGATG 1 cut(s) 484
BtsCI GGATG 4 cut(s) 563, 738, 1036, 1277
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 1 cut(s) 840
BveI ACCTGC 1 cut(s) 1730
Cac8I GCNNGC 4 cut(s) 305, 387, 396, 593
CaiI CAGNNNCTG 1 cut(s) 1692
CfoI GCGC 4 cut(s) 165, 193, 247, 1626
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 3 cut(s) 521, 1291, 1321
ClaI ATCGAT 1 cut(s) 1336
CseI GACGC 2 cut(s) 255, 839
Csp6I GTAC 3 cut(s) 127, 860, 1679
CspAI ACCGGT 1 cut(s) 531
CviAII CATG 6 cut(s) 344, 863, 1169, 1404, 1412, 1434
CviQI GTAC 3 cut(s) 127, 860, 1679
DdeI CTNAG 6 cut(s) 504, 672, 1245, 1295, 1327, 1602
DinI GGCGCC 1 cut(s) 1625
DpnI GATC 6 cut(s) 430, 528, 1300, 1305, 1335, 1339
DpnII GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
Eam1104I CTCTTC 1 cut(s) 1545
EarI CTCTTC 1 cut(s) 1545
Eco130I CCWWGG 1 cut(s) 917
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 3 cut(s) 521, 1291, 1321
EcoO109I RGGNCCY 2 cut(s) 1291, 1321
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 4 cut(s) 490, 1149, 1618, 1663
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 917
EgeI GGCGCC 1 cut(s) 1625
EheI GGCGCC 1 cut(s) 1625
ErhI CCWWGG 1 cut(s) 917
Esp3I CGTCTC 1 cut(s) 1487
FaeI CATG 6 cut(s) 347, 866, 1172, 1407, 1415, 1437
FalI AAGNNNNNCTT 2 cut(s) 1201, 1233
FaqI GGGAC 1 cut(s) 423
FatI CATG 6 cut(s) 343, 862, 1168, 1403, 1411, 1433
FauI CCCGC 2 cut(s) 300, 1052
FbaI TGATCA 1 cut(s) 1303
FblI GTMKAC 1 cut(s) 1612
FokI GGATG 4 cut(s) 550, 745, 1023, 1264
FspAI RTGCGCAY 1 cut(s) 246
FspBI CTAG 1 cut(s) 764
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 4 cut(s) 164, 192, 246, 1625
GsaI CCCAGC 1 cut(s) 1051
GsuI CTGGAG 1 cut(s) 1524
HaeII RGCGCY 1 cut(s) 1627
HapII CCGG 3 cut(s) 124, 532, 1704
HgaI GACGC 2 cut(s) 255, 839
HhaI GCGC 4 cut(s) 165, 193, 247, 1626
Hin1I GRCGYC 2 cut(s) 266, 1624
Hin1II CATG 6 cut(s) 347, 866, 1172, 1407, 1415, 1437
Hin6I GCGC 4 cut(s) 163, 191, 245, 1624
HinP1I GCGC 4 cut(s) 163, 191, 245, 1624
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 5 cut(s) 615, 1120, 1165, 1606, 1734
HpaII CCGG 3 cut(s) 124, 532, 1704
HphI GGTGA 2 cut(s) 521, 1165
Hpy166II GTNNAC 3 cut(s) 513, 1400, 1613
Hpy188III TCNNGA 6 cut(s) 29, 55, 524, 910, 1124, 1133
Hpy8I GTNNAC 3 cut(s) 513, 1400, 1613
HpyAV CCTTC 9 cut(s) 212, 325, 434, 461, 468, 811, 834, 1050, 1061
HpyCH4III ACNGT 3 cut(s) 467, 1490, 1678
HpyCH4IV ACGT 2 cut(s) 1496, 1681
HpyF10VI GCNNNNNNNGC 9 cut(s) 80, 140, 149, 253, 391, 395, 950, 1241, 1421
HpyF3I CTNAG 6 cut(s) 504, 672, 1245, 1295, 1327, 1602
HpySE526I ACGT 2 cut(s) 1496, 1681
Hsp92I GRCGYC 2 cut(s) 266, 1624
Hsp92II CATG 6 cut(s) 347, 866, 1172, 1407, 1415, 1437
HspAI GCGC 4 cut(s) 163, 191, 245, 1624
KasI GGCGCC 1 cut(s) 1623
Ksp22I TGATCA 1 cut(s) 1303
Kzo9I GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
LmnI GCTCC 1 cut(s) 1240
LweI GCATC 4 cut(s) 507, 658, 1000, 1286
MaeI CTAG 1 cut(s) 764
MaeII ACGT 2 cut(s) 1496, 1681
MaeIII GTNAC 2 cut(s) 113, 1484
MalI GATC 6 cut(s) 430, 528, 1300, 1305, 1335, 1339
MboI GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
MboII GAAGA 8 cut(s) 423, 446, 482, 493, 725, 1205, 1562, 1664
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 2 cut(s) 428, 1298
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 9 cut(s) 78, 319, 845, 905, 1031, 1136, 1175, 1213, 1313
Mly113I GGCGCC 1 cut(s) 1624
MseI TTAA 4 cut(s) 66, 318, 624, 1659
MslI CAYNNNNRTG 1 cut(s) 885
MspA1I CMGCKG 4 cut(s) 146, 541, 1047, 1331
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 3 cut(s) 124, 532, 1704
MspR9I CCNGG 4 cut(s) 492, 1151, 1620, 1665
MunI CAATTG 1 cut(s) 78
Mva1269I GAATGC 4 cut(s) 64, 165, 193, 873
MvaI CCWGG 4 cut(s) 492, 1151, 1620, 1665
MvnI CGCG 1 cut(s) 1380
MwoI GCNNNNNNNGC 9 cut(s) 80, 140, 149, 253, 391, 395, 950, 1241, 1421
NarI GGCGCC 1 cut(s) 1624
NdeII GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
NlaIII CATG 6 cut(s) 347, 866, 1172, 1407, 1415, 1437
NlaIV GGNNCC 5 cut(s) 257, 536, 643, 1360, 1625
NmeAIII GCCGAG 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 113
NsbI TGCGCA 1 cut(s) 246
OliI CACNNNNGTG 1 cut(s) 885
PctI GAATGC 4 cut(s) 64, 165, 193, 873
PfeI GAWTC 5 cut(s) 615, 1120, 1165, 1606, 1734
PinAI ACCGGT 1 cut(s) 531
PluTI GGCGCC 1 cut(s) 1627
PpuMI RGGWCCY 2 cut(s) 1291, 1321
PshBI ATTAAT 2 cut(s) 318, 1659
PsiI TTATAA 2 cut(s) 381, 1713
Psp5II RGGWCCY 2 cut(s) 1291, 1321
Psp6I CCWGG 4 cut(s) 490, 1149, 1618, 1663
PspFI CCCAGC 1 cut(s) 1047
PspGI CCWGG 4 cut(s) 490, 1149, 1618, 1663
PspN4I GGNNCC 5 cut(s) 257, 536, 643, 1360, 1625
PspPI GGNCC 3 cut(s) 521, 1291, 1321
PspPPI RGGWCCY 2 cut(s) 1291, 1321
PstI CTGCAG 1 cut(s) 1480
PstNI CAGNNNCTG 1 cut(s) 1692
PsuI RGATCY 2 cut(s) 428, 1298
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 3 cut(s) 128, 861, 1680
RsaNI GTAC 3 cut(s) 127, 860, 1679
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 4 cut(s) 66, 318, 624, 1659
Sau3AI GATC 6 cut(s) 428, 526, 1298, 1303, 1333, 1337
Sau96I GGNCC 3 cut(s) 521, 1291, 1321
ScrFI CCNGG 4 cut(s) 492, 1151, 1620, 1665
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 4 cut(s) 507, 658, 1000, 1286
SfcI CTRYAG 1 cut(s) 1476
SfoI GGCGCC 1 cut(s) 1625
SinI GGWCC 3 cut(s) 521, 1291, 1321
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 2 cut(s) 623, 883
SmoI CTYRAG 2 cut(s) 623, 883
Sse9I AATT 9 cut(s) 78, 319, 845, 905, 1031, 1136, 1175, 1213, 1313
SsiI CCGC 6 cut(s) 146, 234, 307, 541, 1045, 1378
SspDI GGCGCC 1 cut(s) 1623
SspI AATATT 2 cut(s) 1099, 1354
SspMI CTAG 1 cut(s) 764
StyD4I CCNGG 4 cut(s) 490, 1149, 1618, 1663
StyI CCWWGG 1 cut(s) 917
TaaI ACNGT 3 cut(s) 467, 1490, 1678
TaiI ACGT 2 cut(s) 1499, 1684
TaqI TCGA 1 cut(s) 1336
TasI AATT 9 cut(s) 78, 319, 845, 905, 1031, 1136, 1175, 1213, 1313
TatI WGTACW 1 cut(s) 859
TauI GCSGC 1 cut(s) 1380
TfiI GAWTC 5 cut(s) 615, 1120, 1165, 1606, 1734
Tru1I TTAA 4 cut(s) 66, 318, 624, 1659
Tru9I TTAA 4 cut(s) 66, 318, 624, 1659
TscAI CASTG 1 cut(s) 840
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 7 cut(s) 450, 552, 726, 785, 917, 1025, 1157
TspGWI ACGGA 2 cut(s) 147, 1199
TspRI CASTG 1 cut(s) 840
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 3 cut(s) 521, 1291, 1321
VspI ATTAAT 2 cut(s) 318, 1659
XapI RAATTY 3 cut(s) 845, 905, 1313
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 1612
XspI CTAG 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.