RLG00000018361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000267
Physical Location & Seq
Forward (+)
28738741 .. 28739337
597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018361

Sequence Viewer

Length: 597 bp
ATGGCGACGTTGGCGTTTGGAGGATTTAACTGCGAAGGGCAGCGGCGGGTTGATGGATGGATGTCGGGGCTGATGTCGCCTGACCATAGGACGGAGTGCAGATGTTTTGCAGCGATGTGGTGGGATCGGAGATCGCCTGAGGGTGGTGACCGGACGACAGCGTCACTACGATTCTCTGGTGGCGGATCAGATCGGATCAATCACTTGGTGGGATATTCTGACTCCGATCTCTGGAGGGGTGGAGTAGCTAGCCGAAAGGTGGATGGTGGTGCTGCTGCAGGTGGATGGTCGGCAGGGGAGGCGCTGGCCAATTGTCCGCTCTGCACCCGAACTCGACTTGGGCCGGTTGTACGTTGGGTCTGGGCTTTGACCCTTGATCCAAATTATTTTGCTGTTTTGCGTAATTATTATTTTCTTTTCGTATGCTATGGCTCTGTGCCGGAAATAATTCCCTACCACTCTTGGTTAGGGCGAAATGGGCTTTGTCCCGGTATGCACACTCTGTGTGCCTTGTCTGGCCTAGCGAGGCGGCAAGCTATTTGCTTGATCAAATTGACACAACCTCCTAATGGCAGGATGAAATTGAGTGTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.75

Weight (kDa)

9.23

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
AasI GACNNNNNNGTC 1 cut(s) 160
Acc36I ACCTGC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 5 cut(s) 43, 46, 183, 317, 529
AclWI GGATC 4 cut(s) 132, 193, 203, 371
AcoI YGGCCR 1 cut(s) 306
AdeI CACNNNGTG 2 cut(s) 208, 504
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 5 cut(s) 91, 143, 231, 259, 569
AluBI AGCT 2 cut(s) 248, 536
AluI AGCT 2 cut(s) 248, 536
AlwI GGATC 4 cut(s) 132, 193, 203, 371
AoxI GGCC 3 cut(s) 306, 341, 517
ApeKI GCWGC 4 cut(s) 40, 110, 272, 275
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 341
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 1 cut(s) 158
AsuNHI GCTAGC 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 138
BalI TGGCCA 1 cut(s) 308
BbvI GCAGC 4 cut(s) 52, 122, 259, 262
BccI CCATC 4 cut(s) 47, 51, 257, 279
BclI TGATCA 1 cut(s) 546
BcnI CCSGG 1 cut(s) 489
BfaI CTAG 2 cut(s) 249, 521
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 269
BisI GCNGC 6 cut(s) 41, 44, 111, 273, 276, 530
BlsI GCNGC 6 cut(s) 42, 45, 112, 274, 277, 531
Bme1390I CCNGG 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 489
BmtI GCTAGC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 143, 231, 259, 569
Bse118I RCCGGY 1 cut(s) 343
Bse21I CCTNAGG 1 cut(s) 138
BseGI GGATG 5 cut(s) 62, 66, 268, 290, 582
BseLI CCNNNNNNNGG 5 cut(s) 91, 143, 231, 259, 569
BseMII CTCAG 1 cut(s) 129
BseXI GCAGC 4 cut(s) 52, 122, 259, 262
BsgI GTGCAG 2 cut(s) 118, 307
BshFI GGCC 3 cut(s) 308, 343, 519
BsiSI CCGG 4 cut(s) 151, 344, 440, 489
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 5 cut(s) 91, 143, 231, 259, 569
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 3 cut(s) 308, 343, 519
Bsp143I GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
BspACI CCGC 5 cut(s) 43, 46, 183, 317, 529
BspANI GGCC 3 cut(s) 308, 343, 519
BspCNI CTCAG 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 269
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 4 cut(s) 132, 193, 203, 371
BsrBI CCGCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
BstC8I GCNNGC 3 cut(s) 250, 306, 534
BstDEI CTNAG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 5 cut(s) 62, 66, 268, 290, 582
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 8 cut(s) 127, 134, 188, 193, 198, 229, 379, 549
BstMBI GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
BstMWI GCNNNNNNNGC 4 cut(s) 11, 76, 299, 478
BstPI GGTNACC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 4 cut(s) 52, 122, 259, 262
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 3 cut(s) 308, 343, 519
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 5 cut(s) 62, 66, 268, 290, 582
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 3 cut(s) 250, 306, 534
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 350
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 138
DpnI GATC 8 cut(s) 126, 133, 187, 192, 197, 228, 378, 548
DpnII GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
DraIII CACNNNGTG 2 cut(s) 208, 504
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 306
EciI GGCGGA 1 cut(s) 198
Eco81I CCTNAGG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 146
FaiI YATR 4 cut(s) 87, 424, 429, 494
FaqI GGGAC 1 cut(s) 471
FauI CCCGC 1 cut(s) 39
FbaI TGATCA 1 cut(s) 546
Fnu4HI GCNGC 6 cut(s) 41, 44, 111, 273, 276, 530
FokI GGATG 5 cut(s) 69, 73, 275, 297, 589
Fsp4HI GCNGC 6 cut(s) 41, 44, 111, 273, 276, 530
FspBI CTAG 2 cut(s) 249, 521
GlaI GCGC 1 cut(s) 303
GluI GCNGC 6 cut(s) 41, 44, 111, 273, 276, 530
GsuI CTGGAG 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 3 cut(s) 308, 343, 519
HapII CCGG 4 cut(s) 151, 344, 440, 489
HgaI GACGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 304
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 2 cut(s) 171, 221
HpaII CCGG 4 cut(s) 151, 344, 440, 489
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 5 cut(s) 129, 190, 195, 220, 226
Hpy188III TCNNGA 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 8, 352
HpyCH4V TGCA 5 cut(s) 99, 110, 278, 324, 496
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 76, 299, 478
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 8, 352
HspAI GCGC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 546
Kzo9I GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
Lsp1109I GCAGC 4 cut(s) 52, 122, 259, 262
MaeI CTAG 2 cut(s) 249, 521
MaeII ACGT 2 cut(s) 8, 352
MaeIII GTNAC 2 cut(s) 146, 162
MalI GATC 8 cut(s) 126, 133, 187, 192, 197, 228, 378, 548
MbiI CCGCTC 1 cut(s) 319
MboI GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
MfeI CAATTG 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 6 cut(s) 310, 382, 403, 447, 551, 581
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 6 cut(s) 14, 133, 228, 292, 519, 573
Mox20I TGGCCA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 447
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 4 cut(s) 151, 344, 440, 489
MspR9I CCNGG 1 cut(s) 489
MunI CAATTG 1 cut(s) 310
MwoI GCNNNNNNNGC 4 cut(s) 11, 76, 299, 478
NciI CCSGG 1 cut(s) 489
NdeII GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
NheI GCTAGC 1 cut(s) 248
NmuCI GTSAC 2 cut(s) 146, 162
PaqCI CACCTGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 160
PkrI GCNGC 6 cut(s) 42, 45, 112, 274, 277, 531
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 146
PspPI GGNCC 1 cut(s) 341
PstI CTGCAG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 160
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 6 cut(s) 41, 44, 111, 273, 276, 530
Sau3AI GATC 8 cut(s) 124, 131, 185, 190, 195, 226, 376, 546
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 489
SetI ASST 7 cut(s) 11, 250, 261, 283, 355, 538, 565
SfcI CTRYAG 1 cut(s) 276
Sse9I AATT 6 cut(s) 310, 382, 403, 447, 551, 581
SsiI CCGC 5 cut(s) 43, 46, 183, 317, 529
SspMI CTAG 2 cut(s) 249, 521
StyD4I CCNGG 1 cut(s) 487
TaiI ACGT 2 cut(s) 11, 355
TaqI TCGA 1 cut(s) 334
TasI AATT 6 cut(s) 310, 382, 403, 447, 551, 581
TauI GCSGC 2 cut(s) 46, 532
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 2 cut(s) 146, 162
TseI GCWGC 4 cut(s) 40, 110, 272, 275
Tsp45I GTSAC 2 cut(s) 146, 162
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 107
Tth111I GACNNNGTC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 2 cut(s) 249, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.