Rorug04G0032600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000267
Physical Location & Seq
Forward (+)
4809168 .. 4811289
2122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0032600.1

Sequence Viewer

Length: 495 bp
ATGAAGAAAGGTAGGAGACGAAGAAGAAAGGTTAAGTCTGAAATATTTGTCGAGAAAATAAAGGAAAATTATGTGCTGTTTTACTTTTCAAGTTTGGAGAACAATAAGAAGGATGACATTTCACATCTGAAAGAAGTTTATGATGAATTTCCTAAAAAGTATCAAAATTGGACGATTGTGTGGATCCCTATTGTGGAAGATTGGACGGAAGACCATAGAAAAACGTTTGAGGAGTTGGGATCGGAGATGCCATGGTACAAGGTCCAGTTTTTTTCTTCAATAGTGATCAAGTTCCTCAGCGCTGACGACCGGTTGTCCTACAAGGGTAATCCGAAGTGCGTGGTGATGAGCCCACAAGCGCAACTGCAAAGCCACAATACACTCGACTTGATCCGGAAATATGGAATCAATTTCTTTGATCATTTGTTTCCAGTGGTGGTCCCTCGATCCAGGCCCTCTACCGGTGGTCCCTCCAGAGGACCCCCGCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

19.48

Weight (kDa)

9.54

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 393
AciI CCGC 1 cut(s) 485
AclI AACGTT 1 cut(s) 224
AclWI GGATC 5 cut(s) 178, 191, 247, 385, 441
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 257
AfeI AGCGCT 1 cut(s) 301
AfiI CCNNNNNNNGG 3 cut(s) 193, 461, 476
AgeI ACCGGT 2 cut(s) 309, 461
AgsI TTSAA 2 cut(s) 90, 279
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 5 cut(s) 178, 191, 247, 385, 441
Aor13HI TCCGGA 1 cut(s) 393
Aor51HI AGCGCT 1 cut(s) 301
AoxI GGCC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 146
AsiGI ACCGGT 2 cut(s) 309, 461
AspLEI GCGC 2 cut(s) 302, 361
AspS9I GGNCC 5 cut(s) 262, 439, 453, 467, 479
AsuHPI GGTGA 1 cut(s) 355
AvaII GGWCC 4 cut(s) 262, 439, 467, 479
BamHI GGATCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 451
BclI TGATCA 2 cut(s) 285, 418
BcoDI GTCTC 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 451
Bme18I GGWCC 4 cut(s) 262, 439, 467, 479
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgT120I GGNCC 5 cut(s) 262, 439, 453, 467, 479
BmiI GGNNCC 4 cut(s) 185, 441, 469, 481
BmrFI CCNGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 3 cut(s) 309, 393, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 461, 476
Bse118I RCCGGY 2 cut(s) 309, 461
Bse1I ACTGG 2 cut(s) 265, 431
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 3 cut(s) 193, 461, 476
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 2 cut(s) 265, 431
BseRI GAGGAG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 1 cut(s) 454
BshTI ACCGGT 2 cut(s) 309, 461
BsiEI CGRYCG 1 cut(s) 310
BsiSI CCGG 3 cut(s) 310, 394, 462
BslFI GGGAC 2 cut(s) 425, 453
BslI CCNNNNNNNGG 3 cut(s) 193, 461, 476
BsmAI GTCTC 1 cut(s) 10
BsmBI CGTCTC 1 cut(s) 10
BsmFI GGGAC 2 cut(s) 425, 453
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 6 cut(s) 183, 239, 285, 390, 418, 446
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 1 cut(s) 485
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 393
BspLI GGNNCC 4 cut(s) 185, 441, 469, 481
BspPI GGATC 5 cut(s) 178, 191, 247, 385, 441
BsrFI RCCGGY 2 cut(s) 309, 461
BsrI ACTGG 2 cut(s) 265, 431
BssAI RCCGGY 2 cut(s) 309, 461
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 6 cut(s) 183, 239, 285, 390, 418, 446
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 451
BstDEI CTNAG 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 302, 361
BstKTI GATC 6 cut(s) 186, 242, 288, 393, 421, 449
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 6 cut(s) 183, 239, 285, 390, 418, 446
BstMCI CGRYCG 1 cut(s) 310
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 449
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 438
CfoI GCGC 2 cut(s) 302, 361
Cfr10I RCCGGY 2 cut(s) 309, 461
Cfr13I GGNCC 5 cut(s) 262, 439, 453, 467, 479
Csp6I GTAC 1 cut(s) 256
CspAI ACCGGT 2 cut(s) 309, 461
CviAII CATG 1 cut(s) 252
CviJI RGCY 3 cut(s) 351, 372, 454
CviKI_1 RGCY 3 cut(s) 351, 372, 454
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 296
DpnI GATC 6 cut(s) 185, 241, 287, 392, 420, 448
DpnII GATC 6 cut(s) 183, 239, 285, 390, 418, 446
DriI GACNNNNNGTC 1 cut(s) 313
Eam1105I GACNNNNNGTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 4 cut(s) 262, 439, 467, 479
Eco47III AGCGCT 1 cut(s) 301
EcoO109I RGGNCCY 2 cut(s) 453, 479
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 10
FaeI CATG 1 cut(s) 255
FaiI YATR 5 cut(s) 72, 141, 216, 253, 402
FaqI GGGAC 2 cut(s) 425, 453
FatI CATG 1 cut(s) 251
FauI CCCGC 1 cut(s) 492
FbaI TGATCA 2 cut(s) 285, 418
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 353
GlaI GCGC 2 cut(s) 301, 360
GsuI CTGGAG 1 cut(s) 457
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 1 cut(s) 454
HapII CCGG 3 cut(s) 310, 394, 462
HhaI GCGC 2 cut(s) 302, 361
Hin1II CATG 1 cut(s) 255
Hin6I GCGC 2 cut(s) 300, 359
HinP1I GCGC 2 cut(s) 300, 359
HinfI GANTC 1 cut(s) 405
HpaII CCGG 3 cut(s) 310, 394, 462
HphI GGTGA 1 cut(s) 355
Hpy188I TCNGA 4 cut(s) 40, 129, 244, 333
Hpy188III TCNNGA 3 cut(s) 52, 394, 474
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 1 cut(s) 255
HspAI GCGC 2 cut(s) 300, 359
Kpn2I TCCGGA 1 cut(s) 393
Ksp22I TGATCA 2 cut(s) 285, 418
Kzo9I GATC 6 cut(s) 183, 239, 285, 390, 418, 446
LpnPI CCDG 8 cut(s) 278, 323, 407, 436, 444, 463, 475, 487
LweI GCATC 1 cut(s) 237
MaeII ACGT 1 cut(s) 224
MalI GATC 6 cut(s) 185, 241, 287, 392, 420, 448
MboI GATC 6 cut(s) 183, 239, 285, 390, 418, 446
MboII GAAGA 6 cut(s) 16, 33, 36, 209, 221, 267
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 5 cut(s) 67, 146, 166, 409, 490
MnlI CCTC 6 cut(s) 223, 305, 453, 466, 470, 481
MroI TCCGGA 1 cut(s) 393
MseI TTAA 2 cut(s) 33, 489
MspI CCGG 3 cut(s) 310, 394, 462
MspR9I CCNGG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 451
NcoI CCATGG 1 cut(s) 251
NdeII GATC 6 cut(s) 183, 239, 285, 390, 418, 446
NlaIII CATG 1 cut(s) 255
NlaIV GGNNCC 4 cut(s) 185, 441, 469, 481
PfeI GAWTC 1 cut(s) 405
PinAI ACCGGT 2 cut(s) 309, 461
PpuMI RGGWCCY 1 cut(s) 479
Psp1406I AACGTT 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 4 cut(s) 185, 441, 469, 481
PspPI GGNCC 5 cut(s) 262, 439, 453, 467, 479
PspPPI RGGWCCY 1 cut(s) 479
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 33, 489
Sau3AI GATC 6 cut(s) 183, 239, 285, 390, 418, 446
Sau96I GGNCC 5 cut(s) 262, 439, 453, 467, 479
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 353
SetI ASST 4 cut(s) 13, 33, 227, 264
SfaNI GCATC 1 cut(s) 237
SinI GGWCC 4 cut(s) 262, 439, 467, 479
Sse9I AATT 5 cut(s) 67, 146, 166, 409, 490
SsiI CCGC 1 cut(s) 485
SspI AATATT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 449
StyI CCWWGG 1 cut(s) 251
TaiI ACGT 1 cut(s) 227
TaqI TCGA 3 cut(s) 51, 384, 445
TasI AATT 5 cut(s) 67, 146, 166, 409, 490
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 2 cut(s) 33, 489
Tru9I TTAA 2 cut(s) 33, 489
TscAI CASTG 1 cut(s) 438
TspDTI ATGAA 2 cut(s) 17, 159
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 438
VpaK11BI GGWCC 4 cut(s) 262, 439, 467, 479
XapI RAATTY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.