Rorug01G0335400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000267
Physical Location & Seq
Reverse (-)
45384208 .. 45384576
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0335400.1

Sequence Viewer

Length: 369 bp
ATGGTAGCTATACATCAAGGTTGGGATGAGATTGAGGTAGAGTCAGATTGTGCTATGCTTGTAAATGCCCTTGATGGGGAGGAGGAGGACTTGTCAGAGATAGGCCGGATTGTAGAGGATTGTAAAAGATACGCTAGTTCTTTTAAGTCCTTTCAATTTCGGCATGTCTTTCGTGAAGCAAACGGGGTGGCCAATAGGTCAGCACACCTTGCTAGTTGGAATAGTATTGATGAATTTTGGGTAGAAGAGACGCCTGTTATTCGGGACGTTCTCTATGAGGATATGTGTAATGGTTCTAGGGGTTTAGGCAATATGTCCCCCTTATTGTACTCTTTCCCTATTAATAATATGAACGAGGCACCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

4.39

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 70 6.4e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 75, 76
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 2 cut(s) 8, 366
AluI AGCT 2 cut(s) 8, 366
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 2 cut(s) 103, 189
ApoI RAATTY 1 cut(s) 233
AseI ATTAAT 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 121, 154
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 1 cut(s) 358
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 5 cut(s) 135, 213, 297, 363, 367
BmiI GGNNCC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 76
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 75, 76
BseRI GAGGAG 2 cut(s) 95, 98
BshFI GGCC 2 cut(s) 105, 191
BshNI GGYRCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 2 cut(s) 278, 301
BslI CCNNNNNNNGG 2 cut(s) 75, 76
BsmAI GTCTC 1 cut(s) 242
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 278, 301
BsnI GGCC 2 cut(s) 105, 191
BspANI GGCC 2 cut(s) 105, 191
BspLI GGNNCC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 358
BssNI GRCGYC 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 209
BstF5I GGATG 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 167
BsuRI GGCC 2 cut(s) 105, 191
BtsCI GGATG 1 cut(s) 31
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 328
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 1 cut(s) 164
CviJI RGCY 4 cut(s) 8, 105, 191, 366
CviKI_1 RGCY 4 cut(s) 8, 105, 191, 366
CviQI GTAC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 1 cut(s) 167
FaiI YATR 7 cut(s) 11, 56, 165, 276, 284, 314, 350
FaqI GGGAC 2 cut(s) 278, 301
FatI CATG 1 cut(s) 163
FokI GGATG 1 cut(s) 38
FspBI CTAG 5 cut(s) 135, 213, 297, 363, 367
HaeIII GGCC 2 cut(s) 105, 191
HapII CCGG 1 cut(s) 106
HgaI GACGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 167
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 46, 97
Hpy188III TCNNGA 2 cut(s) 173, 263
HpyCH4IV ACGT 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 167
LpnPI CCDG 2 cut(s) 119, 267
MaeI CTAG 5 cut(s) 135, 213, 297, 363, 367
MaeII ACGT 1 cut(s) 267
MboII GAAGA 1 cut(s) 257
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 2 cut(s) 155, 233
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 7 cut(s) 28, 73, 76, 79, 109, 271, 349
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 2 cut(s) 144, 342
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 360
NspI RCATGY 1 cut(s) 167
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 360
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 144, 342
SchI GAGTC 1 cut(s) 50
SetI ASST 8 cut(s) 10, 22, 39, 200, 210, 270, 364, 368
Sse9I AATT 2 cut(s) 155, 233
SspMI CTAG 5 cut(s) 135, 213, 297, 363, 367
TaiI ACGT 1 cut(s) 270
TasI AATT 2 cut(s) 155, 233
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 2 cut(s) 144, 342
Tru9I TTAA 2 cut(s) 144, 342
TspDTI ATGAA 2 cut(s) 246, 365
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 167
XspI CTAG 5 cut(s) 135, 213, 297, 363, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.