RchiOBHm_Chr7g0204721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000267
Physical Location & Seq
Reverse (-)
22387856 .. 22388412
557 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18324

Sequence Viewer

Length: 426 bp
ATGCGGTGGTGTGGTGTGGCAAGGCGGTGGAGTGGTGTTGCGTTGCGGCGGTGCGGTGGAGCAAGAGTATGGTGGCAGCGATGGCTGCCTATGTCGCTAGAGGTCCTTATTGGGGAGAGTGGTGATTGGGCCAGGCCTTTGGTCTTGGGCCCTTGCTGGTTGTGCTTTGTTTTTTGTTGGTTACGGTTTAGTTGTTATGTTTATTTAGTTGTTTTGTTGACAATAAGTCTCTACCATGTTTGGGTAGGGCGAAGTGGGCCTTGTGCCGGTCTGTGCACCTTGTGTGCCTTGTCTGCTCTAGGTAGGTGGCGAGTTCCTGACTTTGTCAAATTGCCACTATTTCCCTTCAGTTTGCACATGATAATAGTTGAAGCATCTTGTAAGGATTCACCCTCCCATACCCTACCTACCAACCTAAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.09

Weight (kDa)

9.35

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 4, 25, 46, 49, 54
AcuI CTGAAG 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 112, 241, 266
AgsI TTSAA 1 cut(s) 371
AhdI GACNNNNNGTC 1 cut(s) 225
AjnI CCWGG 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 233
Alw44I GTGCAC 1 cut(s) 274
AoxI GGCC 4 cut(s) 129, 134, 148, 257
ApaI GGGCCC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 76, 85
AspS9I GGNCC 5 cut(s) 103, 129, 148, 149, 257
AsuHPI GGTGA 2 cut(s) 134, 381
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 2 cut(s) 152, 278
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 72, 88
BccI CCATC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 98, 299
BisI GCNGC 3 cut(s) 47, 77, 86
BlsI GCNGC 3 cut(s) 48, 78, 87
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 225
BmgT120I GGNCC 5 cut(s) 103, 129, 148, 149, 257
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 241, 266
Bse118I RCCGGY 1 cut(s) 266
BseBI CCWGG 1 cut(s) 133
BseLI CCNNNNNNNGG 3 cut(s) 112, 241, 266
BseSI GKGCMC 2 cut(s) 152, 278
BseXI GCAGC 2 cut(s) 72, 88
BshFI GGCC 4 cut(s) 131, 136, 150, 259
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 3 cut(s) 112, 241, 266
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 4 cut(s) 131, 136, 150, 259
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 152, 278
BspACI CCGC 5 cut(s) 4, 25, 46, 49, 54
BspANI GGCC 4 cut(s) 131, 136, 150, 259
BspLI GGNNCC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 233
BstMWI GCNNNNNNNGC 6 cut(s) 82, 85, 94, 162, 256, 293
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSLI GKGCMC 2 cut(s) 152, 278
BstV1I GCAGC 2 cut(s) 72, 88
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuRI GGCC 4 cut(s) 131, 136, 150, 259
BtgZI GCGATG 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 5 cut(s) 103, 129, 148, 149, 257
CviAII CATG 2 cut(s) 236, 358
CviJI RGCY 5 cut(s) 85, 131, 136, 150, 259
CviKI_1 RGCY 5 cut(s) 85, 131, 136, 150, 259
DraIII CACNNNGTG 1 cut(s) 282
DriI GACNNNNNGTC 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 331
EcoO109I RGGNCCY 2 cut(s) 103, 149
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 2 cut(s) 239, 361
FaiI YATR 6 cut(s) 70, 92, 198, 237, 359, 399
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FatI CATG 2 cut(s) 235, 357
Fnu4HI GCNGC 3 cut(s) 47, 77, 86
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 47, 77, 86
FspBI CTAG 2 cut(s) 98, 299
GluI GCNGC 3 cut(s) 47, 77, 86
HaeIII GGCC 4 cut(s) 131, 136, 150, 259
HapII CCGG 1 cut(s) 267
Hin1II CATG 2 cut(s) 239, 361
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 1 cut(s) 386
HpaII CCGG 1 cut(s) 267
HphI GGTGA 2 cut(s) 134, 381
Hpy166II GTNNAC 2 cut(s) 219, 276
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 219, 276
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 276, 355
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 85, 94, 162, 256, 293
Hsp92II CATG 2 cut(s) 239, 361
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 5 cut(s) 118, 142, 145, 280, 330
Lsp1109I GCAGC 2 cut(s) 72, 88
LweI GCATC 1 cut(s) 383
MaeI CTAG 2 cut(s) 98, 299
MaeIII GTNAC 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 152, 278
MluCI AATT 1 cut(s) 329
MnlI CCTC 2 cut(s) 94, 403
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 6 cut(s) 82, 85, 94, 162, 256, 293
NlaIII CATG 2 cut(s) 239, 361
NlaIV GGNNCC 1 cut(s) 150
PceI AGGCCT 1 cut(s) 136
PfeI GAWTC 1 cut(s) 386
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 3 cut(s) 48, 78, 87
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 150
PspOMI GGGCCC 1 cut(s) 148
PspPI GGNCC 5 cut(s) 103, 129, 148, 149, 257
PspPPI RGGWCCY 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 323
SatI GCNGC 3 cut(s) 47, 77, 86
Sau96I GGNCC 5 cut(s) 103, 129, 148, 149, 257
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 152, 278
SetI ASST 6 cut(s) 105, 281, 304, 308, 409, 417
SfaNI GCATC 1 cut(s) 383
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 329
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 5 cut(s) 4, 25, 46, 49, 54
SspMI CTAG 2 cut(s) 98, 299
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 186
TasI AATT 1 cut(s) 329
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 386
TseI GCWGC 2 cut(s) 76, 85
Tth111I GACNNNGTC 1 cut(s) 323
VneI GTGCAC 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 103
XspI CTAG 2 cut(s) 98, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.