RchiOBHm_Chr4g0423271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Forward (+)
48881729 .. 48882329
601 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39266

Sequence Viewer

Length: 585 bp
ATGCCGGTCACGTTTCGATGGAAGCGTGCGTGGTCGGTGAGAAAGCAGGAGGTGCAGGCTGTTGTGCAATATGGGTCATGGGCCTGTTATCTGTTCTTGGGCCTTTTCTGGTGGGCTTATAGTATGTATGTTTTTTCAGTAGTTTGTTTATTGCTTAGGTGTATTTTATTTTCAATAAATCCCTATATAGTTATTGTAGGGAGAGTCGGGCTAAATGTCCATGTCTACACTCAATATGCCTTGTTTGTCCTAGAGAGGAGTCGAGTCGTTATCAAATGGACGAACCCTTCTAGTGGGAAGATGAAACCTAGTGCCGCCAGTTATAGTTCTGATCGGCAGCATAGTGGGAAAGCAGGTTTAATTGCTCTATGGCTTTGTATGAGCTTTATCTTTCCGGTATGTCACCCTTGTGAAGCAAATAGTGTTTCCCAAATATCTAGTTTGTCAGCCCTTGCTACTCGGTGCATGTTTGAGTACATAAGATTAGTAGAGATTCCTGTTATTATTCGAGATGCTCTCTCCGTACTTATTGTATTTCGGGCGGCTGCACCATTGTATTCAACAGTTTCATTAATGAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.06

Weight (kDa)

9.65

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 225
AciI CCGC 2 cut(s) 315, 542
AfaI GTAC 2 cut(s) 476, 525
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 174, 561
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 1 cut(s) 384
AluI AGCT 1 cut(s) 384
AoxI GGCC 2 cut(s) 81, 100
ApeKI GCWGC 2 cut(s) 337, 545
AseI ATTAAT 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 81, 100
AsuHPI GGTGA 2 cut(s) 49, 395
BbvI GCAGC 2 cut(s) 349, 532
BccI CCATC 1 cut(s) 12
BfaI CTAG 4 cut(s) 251, 291, 309, 438
BfuAI ACCTGC 1 cut(s) 344
BisI GCNGC 4 cut(s) 315, 338, 543, 546
BlsI GCNGC 4 cut(s) 316, 339, 544, 547
BmgT120I GGNCC 2 cut(s) 81, 100
BmsI GCATC 1 cut(s) 502
BplI GAGNNNNNCTC 2 cut(s) 501, 533
Bpu10I CCTNAGC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 349, 532
BsgI GTGCAG 2 cut(s) 74, 531
BshFI GGCC 2 cut(s) 83, 102
BsiSI CCGG 2 cut(s) 5, 395
BslI CCNNNNNNNGG 1 cut(s) 293
BsnI GGCC 2 cut(s) 83, 102
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 315, 542
BspANI GGCC 2 cut(s) 83, 102
BspMI ACCTGC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 27, 57
BstDEI CTNAG 1 cut(s) 155
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 349, 532
BsuRI GGCC 2 cut(s) 83, 102
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 27, 57
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 81, 100
Csp6I GTAC 2 cut(s) 475, 524
CviAII CATG 3 cut(s) 78, 221, 466
CviQI GTAC 2 cut(s) 475, 524
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
FaeI CATG 3 cut(s) 81, 224, 469
FatI CATG 3 cut(s) 77, 220, 465
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 315, 338, 543, 546
Fsp4HI GCNGC 4 cut(s) 315, 338, 543, 546
FspBI CTAG 4 cut(s) 251, 291, 309, 438
GluI GCNGC 4 cut(s) 315, 338, 543, 546
HaeIII GGCC 2 cut(s) 83, 102
HapII CCGG 2 cut(s) 5, 395
Hin1II CATG 3 cut(s) 81, 224, 469
HinfI GANTC 4 cut(s) 204, 259, 264, 493
HpaII CCGG 2 cut(s) 5, 395
HphI GGTGA 2 cut(s) 49, 395
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 55, 67, 465, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 3 cut(s) 81, 224, 469
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 9 cut(s) 18, 32, 41, 94, 97, 331, 339, 408, 510
Lsp1109I GCAGC 2 cut(s) 349, 532
LweI GCATC 1 cut(s) 502
MaeI CTAG 4 cut(s) 251, 291, 309, 438
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 7, 401
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 1 cut(s) 310
MluCI AATT 1 cut(s) 360
MlyI GAGTC 3 cut(s) 213, 268, 273
MnlI CCTC 2 cut(s) 43, 249
MseI TTAA 3 cut(s) 359, 572, 583
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 2 cut(s) 5, 395
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 331
NlaIII CATG 3 cut(s) 81, 224, 469
NmuCI GTSAC 2 cut(s) 7, 401
NspI RCATGY 1 cut(s) 469
OliI CACNNNNGTG 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PfeI GAWTC 1 cut(s) 493
PkrI GCNGC 4 cut(s) 316, 339, 544, 547
PleI GAGTC 3 cut(s) 212, 267, 272
PpsI GAGTC 3 cut(s) 212, 267, 272
PshBI ATTAAT 1 cut(s) 572
PspPI GGNCC 2 cut(s) 81, 100
RsaI GTAC 2 cut(s) 476, 525
RsaNI GTAC 2 cut(s) 475, 524
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 3 cut(s) 359, 572, 583
SatI GCNGC 4 cut(s) 315, 338, 543, 546
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 81, 100
SchI GAGTC 3 cut(s) 213, 268, 273
SetI ASST 6 cut(s) 14, 54, 161, 310, 358, 386
SfaNI GCATC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 1 cut(s) 360
SsiI CCGC 2 cut(s) 315, 542
SspMI CTAG 4 cut(s) 251, 291, 309, 438
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 14
TaqI TCGA 3 cut(s) 16, 262, 508
TasI AATT 1 cut(s) 360
TatI WGTACW 1 cut(s) 474
TauI GCSGC 2 cut(s) 317, 545
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 3 cut(s) 359, 572, 583
Tru9I TTAA 3 cut(s) 359, 572, 583
TseFI GTSAC 2 cut(s) 7, 401
TseI GCWGC 2 cut(s) 337, 545
Tsp45I GTSAC 2 cut(s) 7, 401
TspDTI ATGAA 2 cut(s) 317, 558
TspGWI ACGGA 1 cut(s) 511
VspI ATTAAT 1 cut(s) 572
XceI RCATGY 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 4 cut(s) 251, 291, 309, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.