Rorug07G0244600

Anthocyanidin 5,3-O-glucosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004234
Physical Location & Seq
Reverse (-)
22595694 .. 22598289
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0244600.1

Sequence Viewer

Length: 951 bp
ATGGCTCCCGCAGCTTCGAATCCTTTCGACGACCACCACGGCACCACGAGCTCGACCACAGTCTGCGTAATGGATGCGTCAGGCCACCTTGGCTCGACCCTCGTCCAGCGCCTGGTTCAGAGGGGATACACAGTCCACGCCGCGCTTCAGAGCCATGGGGAATCCAAGTTGGGTTCGGTTTCTTGTGAGAATAACAAGAGGCTGAAGATTTTCCATTTAGACCCATTTGATTACCAGAGCATAGTTGATGCTTTGAAGGGCTGTTCTGGCTTGTTCTACACTTTTGAACCTCCACAAGACCAGCCCGACTATGATGAATATATGGCAGAAGTAGAGGTGAGAGCTGCACACAACGTTCTAGAAGCATGTGCCCGAACGGAAACCATAGACAAGGTTTTGTTCACATCATCAGTCACCGCCGTCGTTTGGAGCAGTAACAACAAATCGACGGTCGCTGCTACGCCGGAGTTGGACGAACGGCACTGGACTGACGTCAACTTCTGTCGCAAGTTCAAGCTATGGCATGCCCTATCAAAAACCCTAGCAGAGAAGACAGCGTGGGCGTTGGCAATGGATAGGAGCTTGAATATGGTGTCTATGAATGCAGGGTTGATGATAAATCCCGACTTGTCCATCAGCAACCCCTACTTGAAGGGAGCGGCGGAGATGTATGAAGACGGCGTGCTCGTGATCGTCGATATAAATTTCTTAGTGGATGCCCATATTTGCGTCTTCGAAGACATCACAGCCTACGGTCGATACTTATGTTTCAACAAAATCATCACTCAGTCGGAAGACGCTGTTAACCTTGCCCGGAAGTTGACCCCTTCTGCCCCGGCCTCGTTGCCCCAAAGCAAGGACCAGGATATGAGAATCATCCAAGAGAGAATAAGCAACAAGAAGTTGAATAAGTTGATGGTGGGTTTCAAGAGTAAATCTCAAGTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

316

Amino Acids

35.09

Weight (kDa)

5.93

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 19 - 141 3.9e-07 NmrA-like family
3Beta_HSD PF01073 23 - 153 8.5e-10 3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase PF01370 24 - 200 7.8e-08 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 26 - 140 7.6e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 659
AccII CGCG 1 cut(s) 143
AciI CCGC 5 cut(s) 9, 141, 417, 659, 662
AclI AACGTT 1 cut(s) 354
AcsI RAATTY 1 cut(s) 703
AcuI CTGAAG 2 cut(s) 131, 224
AcyI GRCGYC 1 cut(s) 492
AfiI CCNNNNNNNGG 3 cut(s) 112, 426, 856
AgsI TTSAA 8 cut(s) 256, 287, 514, 586, 652, 772, 907, 928
AjnI CCWGG 2 cut(s) 111, 861
AluBI AGCT 5 cut(s) 14, 51, 344, 517, 582
AluI AGCT 5 cut(s) 14, 51, 344, 517, 582
Alw21I GWGCWC 2 cut(s) 53, 687
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 2 cut(s) 82, 837
ApeKI GCWGC 3 cut(s) 11, 344, 455
ApoI RAATTY 1 cut(s) 703
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
Asp700I GAANNNNTTC 2 cut(s) 23, 209
AspLEI GCGC 2 cut(s) 111, 145
AspS9I GGNCC 1 cut(s) 859
AsuC2I CCSGG 2 cut(s) 814, 836
AsuHPI GGTGA 2 cut(s) 349, 406
AsuII TTCGAA 2 cut(s) 17, 735
AvaII GGWCC 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 373
BaeI ACNNNNGTAYC 2 cut(s) 751, 784
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 53
BauI CACGAG 2 cut(s) 46, 686
BbsI GAAGAC 5 cut(s) 557, 681, 724, 744, 801
Bbv12I GWGCWC 2 cut(s) 53, 687
BbvI GCAGC 3 cut(s) 23, 331, 442
BccI CCATC 2 cut(s) 641, 910
BceAI ACGGC 4 cut(s) 55, 404, 494, 694
BciT130I CCWGG 2 cut(s) 113, 863
BciVI GTATCC 1 cut(s) 119
BcnI CCSGG 2 cut(s) 814, 836
BfaI CTAG 2 cut(s) 359, 542
BfoI RGCGCY 1 cut(s) 112
BfuI GTATCC 1 cut(s) 119
BglI GCCNNNNNGGC 1 cut(s) 90
BisI GCNGC 5 cut(s) 12, 141, 345, 456, 660
BlsI GCNGC 5 cut(s) 13, 142, 346, 457, 661
Bme1390I CCNGG 4 cut(s) 113, 814, 836, 863
Bme18I GGWCC 1 cut(s) 859
BmgT120I GGNCC 1 cut(s) 859
BmiI GGNNCC 2 cut(s) 6, 43
BmrFI CCNGG 4 cut(s) 113, 814, 836, 863
BmsI GCATC 3 cut(s) 64, 238, 706
BoxI GACNNNNGTC 3 cut(s) 59, 101, 491
BpiI GAAGAC 5 cut(s) 557, 681, 724, 744, 801
BplI GAGNNNNNCTC 1 cut(s) 922
Bpu14I TTCGAA 2 cut(s) 17, 735
BpuEI CTTGAG 1 cut(s) 924
BpuMI CCSGG 2 cut(s) 814, 836
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 4 cut(s) 37, 88, 154, 834
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 426, 856
Bse1I ACTGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 576
BseBI CCWGG 2 cut(s) 113, 863
BseDI CCNNGG 4 cut(s) 37, 88, 154, 834
BseGI GGATG 3 cut(s) 79, 721, 876
BseLI CCNNNNNNNGG 3 cut(s) 112, 426, 856
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 1 cut(s) 800
BseNI ACTGG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 3 cut(s) 23, 331, 442
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 2 cut(s) 453, 757
BshFI GGCC 2 cut(s) 84, 839
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 2 cut(s) 453, 757
BsiHKAI GWGCWC 2 cut(s) 53, 687
BsiSI CCGG 3 cut(s) 464, 814, 836
BslI CCNNNNNNNGG 3 cut(s) 112, 426, 856
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 2 cut(s) 84, 839
Bsp119I TTCGAA 2 cut(s) 17, 735
Bsp1286I GDGCHC 3 cut(s) 53, 373, 687
Bsp143I GATC 1 cut(s) 690
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 5 cut(s) 9, 141, 417, 659, 662
BspANI GGCC 2 cut(s) 84, 839
BspCNI CTCAG 1 cut(s) 799
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 6, 43
BspT104I TTCGAA 2 cut(s) 17, 735
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 4 cut(s) 37, 88, 154, 834
BssMI GATC 1 cut(s) 690
BssNI GRCGYC 1 cut(s) 492
BssSI CACGAG 2 cut(s) 46, 686
BssT1I CCWWGG 2 cut(s) 88, 154
Bst2BI CACGAG 2 cut(s) 46, 686
Bst2UI CCWGG 2 cut(s) 113, 863
Bst4CI ACNGT 4 cut(s) 61, 133, 451, 755
BstACI GRCGYC 1 cut(s) 492
BstBI TTCGAA 2 cut(s) 17, 735
BstC8I GCNNGC 2 cut(s) 525, 683
BstDEI CTNAG 2 cut(s) 709, 786
BstDSI CCRYGG 2 cut(s) 37, 154
BstF5I GGATG 3 cut(s) 79, 721, 876
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 2 cut(s) 111, 145
BstKTI GATC 1 cut(s) 693
BstMBI GATC 1 cut(s) 690
BstMCI CGRYCG 2 cut(s) 453, 757
BstMWI GCNNNNNNNGC 4 cut(s) 11, 48, 90, 267
BstNI CCWGG 2 cut(s) 113, 863
BstNSI RCATGY 2 cut(s) 369, 527
BstPAI GACNNNNGTC 3 cut(s) 59, 101, 491
BstSCI CCNGG 4 cut(s) 111, 812, 834, 861
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 23, 331, 442
BstV2I GAAGAC 5 cut(s) 557, 681, 724, 744, 801
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 2 cut(s) 84, 839
BtgI CCRYGG 2 cut(s) 37, 154
BtsCI GGATG 3 cut(s) 79, 721, 876
BtsIMutI CAGTG 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 525, 683
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 2 cut(s) 111, 145
Cfr13I GGNCC 1 cut(s) 859
CseI GACGC 3 cut(s) 66, 718, 806
CviAII CATG 3 cut(s) 155, 366, 524
DdeI CTNAG 2 cut(s) 709, 786
DpnI GATC 1 cut(s) 692
DpnII GATC 1 cut(s) 690
EciI GGCGGA 1 cut(s) 677
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 88, 154
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 859
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 131, 224
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 111, 861
EcoT14I CCWWGG 2 cut(s) 88, 154
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 88, 154
FaeI CATG 3 cut(s) 158, 369, 527
FatI CATG 3 cut(s) 154, 365, 523
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 5 cut(s) 12, 141, 345, 456, 660
FokI GGATG 3 cut(s) 86, 728, 863
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 5 cut(s) 12, 141, 345, 456, 660
FspBI CTAG 2 cut(s) 359, 542
GlaI GCGC 2 cut(s) 110, 144
GluI GCNGC 5 cut(s) 12, 141, 345, 456, 660
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 84, 839
HapII CCGG 3 cut(s) 464, 814, 836
HgaI GACGC 3 cut(s) 66, 718, 806
HhaI GCGC 2 cut(s) 111, 145
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 3 cut(s) 158, 369, 527
Hin6I GCGC 2 cut(s) 109, 143
HinP1I GCGC 2 cut(s) 109, 143
HincII GTYRAC 3 cut(s) 496, 805, 822
HindII GTYRAC 3 cut(s) 496, 805, 822
HinfI GANTC 3 cut(s) 19, 161, 873
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 3 cut(s) 464, 814, 836
HphI GGTGA 2 cut(s) 349, 406
Hpy166II GTNNAC 5 cut(s) 136, 402, 496, 805, 822
Hpy188I TCNGA 3 cut(s) 120, 150, 793
Hpy188III TCNNGA 4 cut(s) 359, 623, 688, 928
Hpy8I GTNNAC 5 cut(s) 136, 402, 496, 805, 822
Hpy99I CGWCG 4 cut(s) 32, 425, 451, 698
HpyAV CCTTC 3 cut(s) 250, 646, 837
HpyCH4III ACNGT 4 cut(s) 61, 133, 451, 755
HpyCH4IV ACGT 2 cut(s) 354, 492
HpyCH4V TGCA 2 cut(s) 347, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 48, 90, 267
HpyF3I CTNAG 2 cut(s) 709, 786
HpySE526I ACGT 2 cut(s) 354, 492
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 3 cut(s) 158, 369, 527
HspAI GCGC 2 cut(s) 109, 143
KspAI GTTAAC 1 cut(s) 805
Kzo9I GATC 1 cut(s) 690
LmnI GCTCC 4 cut(s) 10, 429, 579, 656
Lsp1109I GCAGC 3 cut(s) 23, 331, 442
LweI GCATC 3 cut(s) 64, 238, 706
MaeI CTAG 2 cut(s) 359, 542
MaeII ACGT 2 cut(s) 354, 492
MaeIII GTNAC 2 cut(s) 412, 434
MalI GATC 1 cut(s) 692
MbiI CCGCTC 1 cut(s) 659
MboI GATC 1 cut(s) 690
MboII GAAGA 6 cut(s) 217, 562, 686, 724, 749, 806
MhlI GDGCHC 3 cut(s) 53, 373, 687
MluCI AATT 1 cut(s) 703
MmeI TCCRAC 2 cut(s) 450, 771
MnlI CCTC 6 cut(s) 110, 114, 192, 300, 328, 850
MroXI GAANNNNTTC 2 cut(s) 23, 209
MseI TTAA 1 cut(s) 804
MspI CCGG 3 cut(s) 464, 814, 836
MspR9I CCNGG 4 cut(s) 113, 814, 836, 863
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 2 cut(s) 113, 863
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 11, 48, 90, 267
NciI CCSGG 2 cut(s) 814, 836
NcoI CCATGG 1 cut(s) 154
NdeII GATC 1 cut(s) 690
NlaIII CATG 3 cut(s) 158, 369, 527
NlaIV GGNNCC 2 cut(s) 6, 43
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 2 cut(s) 369, 527
NspV TTCGAA 2 cut(s) 17, 735
PaeI GCATGC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 2 cut(s) 684, 693
PctI GAATGC 1 cut(s) 607
PdmI GAANNNNTTC 2 cut(s) 23, 209
PfeI GAWTC 3 cut(s) 19, 161, 873
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 5 cut(s) 13, 142, 346, 457, 661
PshAI GACNNNNGTC 3 cut(s) 59, 101, 491
Psp124BI GAGCTC 1 cut(s) 53
Psp1406I AACGTT 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 111, 861
PspGI CCWGG 2 cut(s) 111, 861
PspN4I GGNNCC 2 cut(s) 6, 43
PspPI GGNCC 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 112
SacI GAGCTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 5 cut(s) 12, 141, 345, 456, 660
Sau3AI GATC 1 cut(s) 690
Sau96I GGNCC 1 cut(s) 859
ScrFI CCNGG 4 cut(s) 113, 814, 836, 863
SduI GDGCHC 3 cut(s) 53, 373, 687
SfaNI GCATC 3 cut(s) 64, 238, 706
SfuI TTCGAA 2 cut(s) 17, 735
SinI GGWCC 1 cut(s) 859
SmlI CTYRAG 1 cut(s) 939
SmoI CTYRAG 1 cut(s) 939
SphI GCATGC 1 cut(s) 527
Sse9I AATT 1 cut(s) 703
SsiI CCGC 5 cut(s) 9, 141, 417, 659, 662
SspMI CTAG 2 cut(s) 359, 542
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 4 cut(s) 111, 812, 834, 861
StyI CCWWGG 2 cut(s) 88, 154
TaaI ACNGT 4 cut(s) 61, 133, 451, 755
TaiI ACGT 2 cut(s) 357, 495
TaqI TCGA 8 cut(s) 17, 27, 53, 95, 446, 696, 735, 757
TasI AATT 1 cut(s) 703
TauI GCSGC 2 cut(s) 143, 662
TfiI GAWTC 3 cut(s) 19, 161, 873
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 1 cut(s) 488
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 3 cut(s) 11, 344, 455
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 330, 614, 687
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 488
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 1 cut(s) 703
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 2 cut(s) 369, 527
XmnI GAANNNNTTC 2 cut(s) 23, 209
XspI CTAG 2 cut(s) 359, 542
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.