MD11G1021700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014307
Physical Location & Seq
Forward (+)
1890766 .. 1891935
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1021700.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGAGGAACTGCAGGAATTCTAACATCGTTGTGCCGTTGACAGATTCACATTCGTCTGTTCAATCGCAGCCAAAAAGCCGGGGAGTGATTTCGTGGTTGTTTCCGAAGTTAAGGAAGAAGCACAAGAACGAAAGCTCTCCAAACCGAACAGAATCGGAGGAAGTTTCTCAGGTTTATAGGGAATTGGGGATAATGTCGATTGAGACGTTGAGGAAACAGCTCATAGAAGCGAATGAGCATAGAGACGCCGCGTTAATGGAGGTTTCGGGGATGAGATCTTCGCTCGGGGAGCTGAAACAGAAGATGGACTACTTGGAAACTTACTGTGAAGAGCTGAAGAGAGCTTTGAGACAAGCAACACATACCAAGATCCAAATCCCTGAAAAGCTTGGGAACTTTCCGAAGAGTGGCAAATCCAACGATGGGAACGCAGAAAACCTAATGCCGGTCAGCGAGGAAGTAATGGTGGAAGGTTTCTTACAGATAGTATCGGAATCTAGACTGTCTGTAAGACAGTTCTGCAAGATCCTTGTAGCGCAGATCGAAGTAATGGATAACACCCTGGTGGATAATTTGAACATGCTTCTCGAGCCGTTCAAATTGTCATTGAGTTCCAAGTACTCCAAGGCAGTGTTGTACCATTTGGAAGCCATGATCAACCAGTCACTCTACCAAGACTTCGAGAACTGTATGTTTCAGAAAAATGGCTCGCCGAAGATTTTAGACCCTCACCAAGCACGCCAAGCGCAGTTTTCTTCCTTCGTTGCCCTCAGAAACTTGAGCTGGAATGAAGTATTAAGAAAGGGAACGAAGTATTACTGCGAAGAATTCAGCAAGTTTTGTGATCAGAAGATGAGTTGCATCATTACAACACTAAATTGGACAAGGCCGTGGCCGGAGCAGGTTCTTCAAGCATTCTTTGTTGCTACCAAGTGCATTTGGCTGCTTCATTTGCTTGCATTTTCGTTCAATCCGCCTCTCGGAATTCTGAGGGTGGAGGAGAATAGGAGCTTTGATCCACACTACATGGAAGACATGTTCATGGACAGGCAGAGATCGCATGGTCCGAGCCGGGTTAAGATTATGGTGATGCCGGGGTTTTATGTTCAGGATAGGGTTTTAAGGTGTAAGGTTCTTTGCAGATACAAGTCTGCAGGTTCAGTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

390

Amino Acids

45.06

Weight (kDa)

8.96

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIL1_IRKI_C PF24994 329 - 379 4.8e-06 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014307)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12900
fragaria_vesca FvH4_3g43680 FvH4_3g43680
malus_domestica MD11G1021700.v1.1
prunus_persica Prupe.6G016100_v2.0.a1
pyrus_communis pycom03g01740 pycom11g01760
rosa_chinensis RchiOBHm_Chr5g0078341
rosa_laevigata RLG00000036768
rosa_roxburghii Rroxscaffold_1G00003900
rosa_rugosa Rorug05G0460200
rosa_samantha Rh5AG514100 Rh5BG537000 Rh5CG560500 Rh5DG548600
rosa_wichuraiana Rw5G047730 Rw5G047870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 892, 1145
AccII CGCG 1 cut(s) 251
AciI CCGC 2 cut(s) 249, 974
AclWI GGATC 3 cut(s) 364, 520, 1010
AcoI YGGCCR 1 cut(s) 893
AcsI RAATTY 3 cut(s) 16, 827, 984
AcuI CTGAAG 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 2 cut(s) 620, 638
AfiI CCNNNNNNNGG 4 cut(s) 407, 423, 445, 980
AflIII ACRYGT 1 cut(s) 1035
AgsI TTSAA 5 cut(s) 62, 577, 598, 911, 970
AjnI CCWGG 1 cut(s) 561
AleI CACNNNNGTG 1 cut(s) 563
AloI GAACNNNNNNTCC 2 cut(s) 1022, 1054
AluBI AGCT 8 cut(s) 135, 220, 292, 334, 344, 388, 783, 1011
AluI AGCT 8 cut(s) 135, 220, 292, 334, 344, 388, 783, 1011
Alw26I GTCTC 3 cut(s) 197, 237, 343
AlwI GGATC 3 cut(s) 364, 520, 1010
Ama87I CYCGRG 2 cut(s) 284, 587
AoxI GGCC 2 cut(s) 887, 893
ApeKI GCWGC 2 cut(s) 67, 943
ApoI RAATTY 3 cut(s) 16, 827, 984
AspLEI GCGC 2 cut(s) 538, 748
AspS9I GGNCC 1 cut(s) 1064
AsuC2I CCSGG 3 cut(s) 80, 1073, 1095
AsuHPI GGTGA 2 cut(s) 722, 1099
AvaI CYCGRG 2 cut(s) 284, 587
AvaII GGWCC 1 cut(s) 1064
BarI GAAGNNNNNNTAC 4 cut(s) 293, 325, 462, 494
BbsI GAAGAC 1 cut(s) 1038
BbvI GCAGC 2 cut(s) 79, 930
BccI CCATC 2 cut(s) 298, 416
BceAI ACGGC 3 cut(s) 19, 577, 874
BciT130I CCWGG 1 cut(s) 563
BclI TGATCA 2 cut(s) 654, 844
BcnI CCSGG 3 cut(s) 80, 1073, 1095
BcoDI GTCTC 3 cut(s) 197, 237, 343
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 2 cut(s) 10, 1152
BfuAI ACCTGC 2 cut(s) 892, 1145
BglII AGATCT 1 cut(s) 275
BisI GCNGC 3 cut(s) 68, 249, 944
BlsI GCNGC 3 cut(s) 69, 250, 945
BmcAI AGTACT 1 cut(s) 620
Bme1390I CCNGG 4 cut(s) 80, 563, 1073, 1095
Bme18I GGWCC 1 cut(s) 1064
BmeT110I CYCGRG 2 cut(s) 284, 587
BmgT120I GGNCC 1 cut(s) 1064
BmrFI CCNGG 4 cut(s) 80, 563, 1073, 1095
BmsI GCATC 2 cut(s) 870, 1080
BpiI GAAGAC 1 cut(s) 1038
BpuEI CTTGAG 1 cut(s) 799
BpuMI CCSGG 3 cut(s) 80, 1073, 1095
BsaBI GATNNNNATC 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 79, 561, 624, 890, 1094
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 423, 445, 980
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 661
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 5 cut(s) 79, 561, 624, 890, 1094
BseGI GGATG 1 cut(s) 276
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 4 cut(s) 407, 423, 445, 980
BseMII CTCAG 3 cut(s) 182, 784, 980
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 2 cut(s) 79, 930
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 889, 895
BsiHKCI CYCGRG 2 cut(s) 284, 587
BsiSI CCGG 5 cut(s) 79, 446, 896, 1072, 1094
BslI CCNNNNNNNGG 4 cut(s) 407, 423, 445, 980
BsmAI GTCTC 3 cut(s) 197, 237, 343
BsmBI CGTCTC 2 cut(s) 197, 237
BsmI GAATGC 1 cut(s) 914
BsnI GGCC 2 cut(s) 889, 895
BsoBI CYCGRG 2 cut(s) 284, 587
Bsp143I GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
BspACI CCGC 2 cut(s) 249, 974
BspANI GGCC 2 cut(s) 889, 895
BspCNI CTCAG 3 cut(s) 181, 783, 981
BspFNI CGCG 1 cut(s) 251
BspMAI CTGCAG 2 cut(s) 14, 1156
BspMI ACCTGC 2 cut(s) 892, 1145
BspPI GGATC 3 cut(s) 364, 520, 1010
BspQI GCTCTTC 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 5 cut(s) 79, 561, 624, 890, 1094
BssMI GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 4 cut(s) 326, 504, 516, 689
Bst6I CTCTTC 3 cut(s) 324, 332, 398
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 3 cut(s) 710, 739, 957
BstDEI CTNAG 3 cut(s) 168, 770, 989
BstDSI CCRYGG 1 cut(s) 890
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 251
BstHHI GCGC 2 cut(s) 538, 748
BstKTI GATC 8 cut(s) 278, 372, 528, 543, 657, 847, 1018, 1058
BstMAI GTCTC 3 cut(s) 197, 237, 343
BstMBI GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
BstMWI GCNNNNNNNGC 5 cut(s) 289, 589, 743, 952, 1057
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 2 cut(s) 583, 1039
BstSCI CCNGG 4 cut(s) 78, 561, 1071, 1093
BstSFI CTRYAG 2 cut(s) 10, 1152
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 79, 930
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 3 cut(s) 275, 369, 525
BstYI RGATCY 3 cut(s) 275, 369, 525
BsuRI GGCC 2 cut(s) 889, 895
BtgI CCRYGG 1 cut(s) 890
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 636
BveI ACCTGC 2 cut(s) 892, 1145
Cac8I GCNNGC 3 cut(s) 710, 739, 957
CfoI GCGC 2 cut(s) 538, 748
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 1064
CseI GACGC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 619, 637
CviAII CATG 6 cut(s) 580, 652, 1027, 1036, 1042, 1061
CviQI GTAC 2 cut(s) 619, 637
DdeI CTNAG 3 cut(s) 168, 770, 989
DpnI GATC 8 cut(s) 277, 371, 527, 542, 656, 846, 1017, 1057
DpnII GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
EaeI YGGCCR 1 cut(s) 893
Eam1104I CTCTTC 3 cut(s) 324, 332, 398
EarI CTCTTC 3 cut(s) 324, 332, 398
EciI GGCGGA 1 cut(s) 963
Eco130I CCWWGG 1 cut(s) 624
Eco47I GGWCC 1 cut(s) 1064
Eco57I CTGAAG 1 cut(s) 356
Eco88I CYCGRG 2 cut(s) 284, 587
EcoRI GAATTC 3 cut(s) 16, 827, 984
EcoRII CCWGG 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 624
Esp3I CGTCTC 2 cut(s) 197, 237
FaeI CATG 6 cut(s) 583, 655, 1030, 1039, 1045, 1064
FatI CATG 6 cut(s) 579, 651, 1026, 1035, 1041, 1060
FbaI TGATCA 2 cut(s) 654, 844
Fnu4HI GCNGC 3 cut(s) 68, 249, 944
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 3 cut(s) 68, 249, 944
FspBI CTAG 1 cut(s) 498
GlaI GCGC 2 cut(s) 537, 747
GluI GCNGC 3 cut(s) 68, 249, 944
HaeIII GGCC 2 cut(s) 889, 895
HapII CCGG 5 cut(s) 79, 446, 896, 1072, 1094
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 538, 748
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 6 cut(s) 583, 655, 1030, 1039, 1045, 1064
Hin6I GCGC 2 cut(s) 536, 746
HinP1I GCGC 2 cut(s) 536, 746
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 3 cut(s) 44, 152, 494
HpaII CCGG 5 cut(s) 79, 446, 896, 1072, 1094
HphI GGTGA 2 cut(s) 722, 1099
Hpy166II GTNNAC 1 cut(s) 39
Hpy188III TCNNGA 4 cut(s) 498, 587, 682, 1109
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 464, 769
HpyCH4III ACNGT 4 cut(s) 326, 504, 516, 689
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 7 cut(s) 12, 522, 861, 936, 959, 1140, 1154
HpyF10VI GCNNNNNNNGC 5 cut(s) 289, 589, 743, 952, 1057
HpyF3I CTNAG 3 cut(s) 168, 770, 989
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 6 cut(s) 583, 655, 1030, 1039, 1045, 1064
HspAI GCGC 2 cut(s) 536, 746
Ksp22I TGATCA 2 cut(s) 654, 844
Kzo9I GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 3 cut(s) 289, 898, 1008
Lsp1109I GCAGC 2 cut(s) 79, 930
LweI GCATC 2 cut(s) 870, 1080
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 663
MalI GATC 8 cut(s) 277, 371, 527, 542, 656, 846, 1017, 1057
MboI GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
MflI RGATCY 3 cut(s) 275, 369, 525
MluCI AATT 8 cut(s) 16, 182, 571, 599, 827, 877, 984, 1165
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 9 cut(s) 151, 204, 253, 448, 738, 779, 984, 987, 991
MseI TTAA 5 cut(s) 110, 254, 797, 1077, 1121
MslI CAYNNNNRTG 3 cut(s) 29, 563, 1040
MspI CCGG 5 cut(s) 79, 446, 896, 1072, 1094
MspR9I CCNGG 4 cut(s) 80, 563, 1073, 1095
Mva1269I GAATGC 1 cut(s) 914
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 5 cut(s) 289, 589, 743, 952, 1057
NciI CCSGG 3 cut(s) 80, 1073, 1095
NdeII GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
NlaIII CATG 6 cut(s) 583, 655, 1030, 1039, 1045, 1064
NmuCI GTSAC 1 cut(s) 663
NspI RCATGY 2 cut(s) 583, 1039
OliI CACNNNNGTG 1 cut(s) 563
PaeR7I CTCGAG 1 cut(s) 587
PciI ACATGT 1 cut(s) 1035
PciSI GCTCTTC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 2 cut(s) 203, 1064
PctI GAATGC 1 cut(s) 914
PfeI GAWTC 3 cut(s) 44, 152, 494
PkrI GCNGC 3 cut(s) 69, 250, 945
PscI ACATGT 1 cut(s) 1035
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspPI GGNCC 1 cut(s) 1064
PstI CTGCAG 2 cut(s) 14, 1156
PsuI RGATCY 3 cut(s) 275, 369, 525
RsaI GTAC 2 cut(s) 620, 638
RsaNI GTAC 2 cut(s) 619, 637
RseI CAYNNNNRTG 3 cut(s) 29, 563, 1040
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 5 cut(s) 110, 254, 797, 1077, 1121
SatI GCNGC 3 cut(s) 68, 249, 944
Sau3AI GATC 8 cut(s) 275, 369, 525, 540, 654, 844, 1015, 1055
Sau96I GGNCC 1 cut(s) 1064
ScaI AGTACT 1 cut(s) 620
ScrFI CCNGG 4 cut(s) 80, 563, 1073, 1095
SfaNI GCATC 2 cut(s) 870, 1080
SfcI CTRYAG 2 cut(s) 10, 1152
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 1 cut(s) 1064
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 3 cut(s) 29, 563, 1040
SmlI CTYRAG 2 cut(s) 587, 778
SmoI CTYRAG 2 cut(s) 587, 778
Sse9I AATT 8 cut(s) 16, 182, 571, 599, 827, 877, 984, 1165
SsiI CCGC 2 cut(s) 249, 974
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 4 cut(s) 78, 561, 1071, 1093
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 4 cut(s) 326, 504, 516, 689
TaiI ACGT 1 cut(s) 209
TaqI TCGA 4 cut(s) 197, 543, 588, 681
TasI AATT 8 cut(s) 16, 182, 571, 599, 827, 877, 984, 1165
TatI WGTACW 1 cut(s) 618
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 3 cut(s) 44, 152, 494
Tru1I TTAA 5 cut(s) 110, 254, 797, 1077, 1121
Tru9I TTAA 5 cut(s) 110, 254, 797, 1077, 1121
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 1 cut(s) 663
TseI GCWGC 2 cut(s) 67, 943
Tsp45I GTSAC 1 cut(s) 663
TspDTI ATGAA 3 cut(s) 804, 938, 1030
TspRI CASTG 1 cut(s) 636
VpaK11BI GGWCC 1 cut(s) 1064
XapI RAATTY 3 cut(s) 16, 827, 984
XbaI TCTAGA 1 cut(s) 497
XceI RCATGY 2 cut(s) 583, 1039
XhoI CTCGAG 1 cut(s) 587
XspI CTAG 1 cut(s) 498
ZrmI AGTACT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.