Rh5CG560500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014307
Physical Location & Seq
Reverse (-)
78439011 .. 78441417
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG560500.1

Sequence Viewer

Length: 1638 bp
ATGGCTACTGACACCAGAATTTTCCCAGACCAAAACAACAACAAGACCAAAAACAATGAGATTAACAGGGTGGAAATCCAAGCAGCCATTGCCAAAGCTGTGGAGCTTAGAGCTCTTCATGCTGCTTTGGTTCAAGGCAGCAGCCCTGCAAATCTCAGGTTCCCTTCTTCTGCTTCCCCAGCTAATTCACGCCATGCCTCTAACTTCTCTGCTCAGGACTACCCTGTTTTCACGCCTAGTTATGAAGACGAACCATCATCCGGGTATCATCAAATTCCGATGAAGAACAGAACGTTATCTGAAAGTTGGGACGAGTACGGGCTAGAAGGAAATGGGGATGAATCAGTTGTGTCAAATTACAAGGAAAACTCATCTTCAAGAAAAGGGTTTCCTTCTGATTTATCCAACTTTGAATCCCACATTTGCCCAGCTGAGGATAACAAGTCTATCACTGGCTCATGTACAAACAACATCACCGTGCTTCAAACATCACCAGATTCTCATGCATCGACTACTACACAGTCACAACCAAAAAGTAGGGGAGTGATTTCTTGGTTGTTTCCGCGGTTAAAGAAGAAGCACAAGAATATAAGCTCTCCAACCAGGACAGAATCTGAGGAAGTTTCTCAAGCCTACAAGGATTTTGGAATCATGTCAGTTGAAGTATTGAAGAAAGAGCTCATAAAAGCAAATGAGAATAGAGACTCGGCGTTAAAGGAGGTTTCTGAGATGAGATCTTCACTTGGGGAGCTGAAGCAGAAGCTGGAGTACTTGGAAACTTACTGTGAAGAGCTGAAGAAGGCTTTGAGACAAGCAACACATGCTAATAAGAATTTCCAAATGCCAGAAAATATTGGGAATTTCCCAAACAGACCAGGAAAATCAAGTGATGGGAATGCGGAAAACTTAATGCCAGTCAGCGAGGAAGTAATGGTGGAAGGTTTCCTGCAGATAGTATCCGAAGCAAGACTTTCAGTAAGACAATTCTGCAAAATCCTTGTAGCACAAATTGAACTAACAGATAACACCTTGGTGGACAATTTGAACCTGCTTCTCCAACCATTCAAATTGTCATTGAATTCCAAGTATTCGAAAGCTGTGTCATACCATTTGGAAGCCATCATAAACCAGTCACTGTACCAAGACTTTGAGAACTGTGTGTTTCAGAAGCATGGCTCACCAAAGCTTCTAGATCCTCAACAAGCTCGCCAAGCACAGTTTTCTTCATTCGTGGCACTAAGAAACTTAAGCTGGAATGAAGTTTTGAGGAAGGGAACAAAGTATTATTGTGAGGAATTCAGCAAGTTTTGTGATCAGAAGATGAGTTGCATCATTACAACACTAAATTGGACTAGGCCATGGCCTGAGCAGGTTCTTCAAGCATTCTTTGTAGCTACGAAATGCATTTGGTTACTTCATTTGCTTGCGTTTTCATTCAATCCGCCGCTGGGGATATTGAGGGTGGAAGAGAATAGGAGCTTTGATCCACATTACATGGAAGACATGTTTATGGATAGGCAGAGATCACATGGTTCAAGCAGGGTTAAGATTATGGTAATGCCAGGGTTTTATGTTCAGGATAGGGTTTTAAGGTGTAAGGTTCTTTGCAGGTATAAGTCTACAGGTCAAGCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

545

Amino Acids

61.89

Weight (kDa)

8.16

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIL1_IRKI_C PF24994 485 - 535 9.1e-06 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014307)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12900
fragaria_vesca FvH4_3g43680 FvH4_3g43680
malus_domestica MD11G1021700.v1.1
prunus_persica Prupe.6G016100_v2.0.a1
pyrus_communis pycom03g01740 pycom11g01760
rosa_chinensis RchiOBHm_Chr5g0078341
rosa_laevigata RLG00000036768
rosa_roxburghii Rroxscaffold_1G00003900
rosa_rugosa Rorug05G0460200
rosa_samantha Rh5AG514100 Rh5BG537000 Rh5CG560500 Rh5DG548600
rosa_wichuraiana Rw5G047730 Rw5G047870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 1056, 1360, 1599
AccI GTMKAC 1 cut(s) 1619
AccII CGCG 1 cut(s) 565
AciI CCGC 5 cut(s) 563, 565, 899, 1442, 1445
AclI AACGTT 1 cut(s) 293
AclWI GGATC 2 cut(s) 1187, 1478
AcsI RAATTY 6 cut(s) 18, 273, 832, 859, 1078, 1295
AcuI CTGAAG 2 cut(s) 773, 815
AfaI GTAC 4 cut(s) 317, 463, 770, 1139
AfiI CCNNNNNNNGG 3 cut(s) 260, 433, 1448
AflII CTTAAG 1 cut(s) 1246
AflIII ACRYGT 1 cut(s) 1503
AjnI CCWGG 3 cut(s) 602, 874, 1561
AleI CACNNNNGTG 1 cut(s) 1031
Alw21I GWGCWC 2 cut(s) 115, 681
Alw26I GTCTC 2 cut(s) 696, 802
AlwI GGATC 2 cut(s) 1187, 1478
AlwNI CAGNNNCTG 3 cut(s) 614, 763, 1135
AoxI GGCC 2 cut(s) 1355, 1361
ApeKI GCWGC 4 cut(s) 83, 122, 138, 141
ApoI RAATTY 6 cut(s) 18, 273, 832, 859, 1078, 1295
ArsI GACNNNNNNTTYG 2 cut(s) 1085, 1117
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 466, 483, 1170
AsuII TTCGAA 1 cut(s) 1091
BanII GRGCYC 2 cut(s) 115, 681
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
BbsI GAAGAC 2 cut(s) 252, 1506
Bbv12I GWGCWC 2 cut(s) 115, 681
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 95, 109, 150, 153
BccI CCATC 3 cut(s) 262, 884, 1127
BciT130I CCWGG 3 cut(s) 604, 876, 1563
BciVI GTATCC 1 cut(s) 967
BclI TGATCA 1 cut(s) 1312
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 696, 802
BfaI CTAG 4 cut(s) 237, 323, 1190, 1353
BfmI CTRYAG 2 cut(s) 947, 1620
BfrI CTTAAG 1 cut(s) 1246
BfuAI ACCTGC 3 cut(s) 1056, 1360, 1599
BfuI GTATCC 1 cut(s) 967
BglII AGATCT 1 cut(s) 734
BisI GCNGC 5 cut(s) 84, 123, 139, 142, 1445
BlsI GCNGC 5 cut(s) 85, 124, 140, 143, 1446
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 4 cut(s) 262, 604, 876, 1563
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 4 cut(s) 262, 604, 876, 1563
BmsI GCATC 2 cut(s) 515, 1338
BpiI GAAGAC 2 cut(s) 252, 1506
BpmI CTGGAG 1 cut(s) 785
Bpu10I CCTNAGC 3 cut(s) 213, 432, 1365
Bpu14I TTCGAA 1 cut(s) 1091
BpuEI CTTGAG 1 cut(s) 612
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 4 cut(s) 563, 1029, 1358, 1562
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 433, 1448
Bse1I ACTGG 3 cut(s) 457, 914, 1129
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 3 cut(s) 604, 876, 1563
BseDI CCNNGG 4 cut(s) 563, 1029, 1358, 1562
BseGI GGATG 2 cut(s) 257, 343
BseLI CCNNNNNNNGG 3 cut(s) 260, 433, 1448
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 6 cut(s) 169, 227, 423, 606, 717, 1356
BseNI ACTGG 3 cut(s) 457, 914, 1129
BseXI GCAGC 4 cut(s) 95, 109, 150, 153
BseYI CCCAGC 3 cut(s) 178, 427, 1447
Bsh1236I CGCG 1 cut(s) 565
BshFI GGCC 2 cut(s) 1357, 1363
BsiHKAI GWGCWC 2 cut(s) 115, 681
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 260, 433, 1448
BsmAI GTCTC 2 cut(s) 696, 802
BsmFI GGGAC 1 cut(s) 323
BsmI GAATGC 2 cut(s) 901, 1382
BsnI GGCC 2 cut(s) 1357, 1363
Bsp119I TTCGAA 1 cut(s) 1091
Bsp1286I GDGCHC 2 cut(s) 115, 681
Bsp1407I TGTACA 1 cut(s) 461
Bsp143I GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
Bsp19I CCATGG 1 cut(s) 1358
BspACI CCGC 5 cut(s) 563, 565, 899, 1442, 1445
BspANI GGCC 2 cut(s) 1357, 1363
BspCNI CTCAG 6 cut(s) 168, 226, 424, 607, 718, 1357
BspFNI CGCG 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 3 cut(s) 1056, 1360, 1599
BspPI GGATC 2 cut(s) 1187, 1478
BspQI GCTCTTC 2 cut(s) 120, 783
BspT104I TTCGAA 1 cut(s) 1091
BspTI CTTAAG 1 cut(s) 1246
BsrDI GCAATG 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 461
BsrI ACTGG 3 cut(s) 457, 914, 1129
BssECI CCNNGG 4 cut(s) 563, 1029, 1358, 1562
BssMI GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
BssT1I CCWWGG 2 cut(s) 1029, 1358
Bst2UI CCWGG 3 cut(s) 604, 876, 1563
Bst4CI ACNGT 6 cut(s) 478, 522, 785, 1137, 1157, 1218
Bst6I CTCTTC 3 cut(s) 120, 783, 1461
BstAFI CTTAAG 1 cut(s) 1246
BstAPI GCANNNNNTGC 2 cut(s) 89, 821
BstAUI TGTACA 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 2 cut(s) 1207, 1425
BstDEI CTNAG 8 cut(s) 107, 155, 213, 432, 615, 726, 1238, 1365
BstDSI CCRYGG 2 cut(s) 563, 1358
BstF5I GGATG 2 cut(s) 257, 343
BstFNI CGCG 1 cut(s) 565
BstKTI GATC 5 cut(s) 737, 1195, 1315, 1486, 1526
BstMAI GTCTC 2 cut(s) 696, 802
BstMBI GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
BstMWI GCNNNNNNNGC 5 cut(s) 89, 119, 179, 821, 1211
BstNI CCWGG 3 cut(s) 604, 876, 1563
BstNSI RCATGY 2 cut(s) 824, 1507
BstSCI CCNGG 4 cut(s) 260, 602, 874, 1561
BstSFI CTRYAG 2 cut(s) 947, 1620
BstUI CGCG 1 cut(s) 565
BstV1I GCAGC 4 cut(s) 95, 109, 150, 153
BstV2I GAAGAC 2 cut(s) 252, 1506
BstX2I RGATCY 2 cut(s) 734, 1192
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 2 cut(s) 734, 1192
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 2 cut(s) 1357, 1363
BtgI CCRYGG 2 cut(s) 563, 1358
BtsCI GGATG 2 cut(s) 257, 343
BtsIMutI CAGTG 2 cut(s) 450, 1133
BveI ACCTGC 3 cut(s) 1056, 1360, 1599
Cac8I GCNNGC 2 cut(s) 1207, 1425
CaiI CAGNNNCTG 3 cut(s) 614, 763, 1135
Cfr42I CCGCGG 1 cut(s) 566
Csp6I GTAC 4 cut(s) 316, 462, 769, 1138
CviQI GTAC 4 cut(s) 316, 462, 769, 1138
DdeI CTNAG 8 cut(s) 107, 155, 213, 432, 615, 726, 1238, 1365
DpnI GATC 5 cut(s) 736, 1194, 1314, 1485, 1525
DpnII GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
Eam1104I CTCTTC 3 cut(s) 120, 783, 1461
EarI CTCTTC 3 cut(s) 120, 783, 1461
EciI GGCGGA 1 cut(s) 1431
Ecl136II GAGCTC 2 cut(s) 113, 679
Eco130I CCWWGG 2 cut(s) 1029, 1358
Eco24I GRGCYC 2 cut(s) 115, 681
Eco53kI GAGCTC 2 cut(s) 113, 679
Eco57I CTGAAG 2 cut(s) 773, 815
EcoICRI GAGCTC 2 cut(s) 113, 679
EcoRI GAATTC 2 cut(s) 1078, 1295
EcoRII CCWGG 3 cut(s) 602, 874, 1561
EcoT14I CCWWGG 2 cut(s) 1029, 1358
EcoT22I ATGCAT 2 cut(s) 508, 1406
EcoT38I GRGCYC 2 cut(s) 115, 681
ErhI CCWWGG 2 cut(s) 1029, 1358
FalI AAGNNNNNCTT 2 cut(s) 954, 986
FaqI GGGAC 1 cut(s) 323
FbaI TGATCA 1 cut(s) 1312
FblI GTMKAC 1 cut(s) 1619
Fnu4HI GCNGC 5 cut(s) 84, 123, 139, 142, 1445
FokI GGATG 2 cut(s) 244, 350
FriOI GRGCYC 2 cut(s) 115, 681
Fsp4HI GCNGC 5 cut(s) 84, 123, 139, 142, 1445
FspBI CTAG 4 cut(s) 237, 323, 1190, 1353
GluI GCNGC 5 cut(s) 84, 123, 139, 142, 1445
GsaI CCCAGC 3 cut(s) 182, 431, 1451
GsuI CTGGAG 1 cut(s) 785
HaeIII GGCC 2 cut(s) 1357, 1363
HapII CCGG 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 1184
HinfI GANTC 6 cut(s) 341, 413, 497, 611, 648, 704
HpaII CCGG 1 cut(s) 261
HphI GGTGA 3 cut(s) 466, 483, 1170
Hpy166II GTNNAC 2 cut(s) 1036, 1620
Hpy188I TCNGA 8 cut(s) 279, 301, 397, 616, 727, 961, 1167, 1317
Hpy188III TCNNGA 4 cut(s) 215, 378, 1190, 1577
Hpy8I GTNNAC 2 cut(s) 1036, 1620
HpyAV CCTTC 6 cut(s) 174, 320, 402, 793, 932, 1264
HpyCH4III ACNGT 6 cut(s) 478, 522, 785, 1137, 1157, 1218
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 7 cut(s) 149, 506, 949, 990, 1329, 1404, 1608
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 119, 179, 821, 1211
HpyF3I CTNAG 8 cut(s) 107, 155, 213, 432, 615, 726, 1238, 1365
HpySE526I ACGT 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 1312
KspI CCGCGG 1 cut(s) 566
Kzo9I GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
LguI GCTCTTC 2 cut(s) 120, 783
LmnI GCTCC 3 cut(s) 103, 748, 1476
Lsp1109I GCAGC 4 cut(s) 95, 109, 150, 153
LweI GCATC 2 cut(s) 515, 1338
MaeI CTAG 4 cut(s) 237, 323, 1190, 1353
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 3 cut(s) 522, 1131, 1410
MalI GATC 5 cut(s) 736, 1194, 1314, 1485, 1525
MboI GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
MflI RGATCY 2 cut(s) 734, 1192
MhlI GDGCHC 2 cut(s) 115, 681
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 3 cut(s) 429, 623, 1081
MnlI CCTC 9 cut(s) 208, 427, 610, 712, 916, 1206, 1260, 1285, 1452
Mph1103I ATGCAT 2 cut(s) 508, 1406
MseI TTAA 7 cut(s) 63, 569, 713, 908, 1247, 1545, 1589
MslI CAYNNNNRTG 3 cut(s) 476, 1031, 1508
MspA1I CMGCKG 3 cut(s) 431, 565, 1447
MspCI CTTAAG 1 cut(s) 1246
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 4 cut(s) 262, 604, 876, 1563
Mva1269I GAATGC 2 cut(s) 901, 1382
MvaI CCWGG 3 cut(s) 604, 876, 1563
MvnI CGCG 1 cut(s) 565
MwoI GCNNNNNNNGC 5 cut(s) 89, 119, 179, 821, 1211
NciI CCSGG 1 cut(s) 262
NcoI CCATGG 1 cut(s) 1358
NdeII GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
NlaIV GGNNCC 1 cut(s) 161
NmeAIII GCCGAG 1 cut(s) 686
NmuCI GTSAC 2 cut(s) 522, 1131
NsiI ATGCAT 2 cut(s) 508, 1406
NspI RCATGY 2 cut(s) 824, 1507
NspV TTCGAA 1 cut(s) 1091
OliI CACNNNNGTG 1 cut(s) 1031
PciI ACATGT 1 cut(s) 1503
PciSI GCTCTTC 2 cut(s) 120, 783
PctI GAATGC 2 cut(s) 901, 1382
PfeI GAWTC 5 cut(s) 341, 413, 497, 611, 648
PkrI GCNGC 5 cut(s) 85, 124, 140, 143, 1446
PleI GAGTC 1 cut(s) 698
PpsI GAGTC 1 cut(s) 698
PscI ACATGT 1 cut(s) 1503
Psp124BI GAGCTC 2 cut(s) 115, 681
Psp1406I AACGTT 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 602, 874, 1561
PspFI CCCAGC 3 cut(s) 178, 427, 1447
PspGI CCWGG 3 cut(s) 602, 874, 1561
PspN4I GGNNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 951
PstNI CAGNNNCTG 3 cut(s) 614, 763, 1135
PsuI RGATCY 2 cut(s) 734, 1192
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 4 cut(s) 317, 463, 770, 1139
RsaNI GTAC 4 cut(s) 316, 462, 769, 1138
RseI CAYNNNNRTG 3 cut(s) 476, 1031, 1508
SacI GAGCTC 2 cut(s) 115, 681
SacII CCGCGG 1 cut(s) 566
SapI GCTCTTC 2 cut(s) 120, 783
SaqAI TTAA 7 cut(s) 63, 569, 713, 908, 1247, 1545, 1589
SatI GCNGC 5 cut(s) 84, 123, 139, 142, 1445
Sau3AI GATC 5 cut(s) 734, 1192, 1312, 1483, 1523
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 4 cut(s) 262, 604, 876, 1563
SduI GDGCHC 2 cut(s) 115, 681
SfaNI GCATC 2 cut(s) 515, 1338
SfcI CTRYAG 2 cut(s) 947, 1620
Sfr303I CCGCGG 1 cut(s) 566
SfuI TTCGAA 1 cut(s) 1091
SgrBI CCGCGG 1 cut(s) 566
SmiMI CAYNNNNRTG 3 cut(s) 476, 1031, 1508
SmlI CTYRAG 2 cut(s) 627, 1246
SmoI CTYRAG 2 cut(s) 627, 1246
SsiI CCGC 5 cut(s) 563, 565, 899, 1442, 1445
SspI AATATT 1 cut(s) 853
SspMI CTAG 4 cut(s) 237, 323, 1190, 1353
SstI GAGCTC 2 cut(s) 115, 681
StyD4I CCNGG 4 cut(s) 260, 602, 874, 1561
StyI CCWWGG 2 cut(s) 1029, 1358
TaaI ACNGT 6 cut(s) 478, 522, 785, 1137, 1157, 1218
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 509, 1091
TatI WGTACW 2 cut(s) 461, 768
TauI GCSGC 1 cut(s) 1447
TfiI GAWTC 5 cut(s) 341, 413, 497, 611, 648
Tru1I TTAA 7 cut(s) 63, 569, 713, 908, 1247, 1545, 1589
Tru9I TTAA 7 cut(s) 63, 569, 713, 908, 1247, 1545, 1589
TscAI CASTG 2 cut(s) 457, 1140
TseFI GTSAC 2 cut(s) 522, 1131
TseI GCWGC 4 cut(s) 83, 122, 138, 141
Tsp45I GTSAC 2 cut(s) 522, 1131
TspDTI ATGAA 8 cut(s) 107, 258, 296, 354, 1215, 1272, 1406, 1422
TspRI CASTG 2 cut(s) 457, 1140
Vha464I CTTAAG 1 cut(s) 1246
XapI RAATTY 6 cut(s) 18, 273, 832, 859, 1078, 1295
XbaI TCTAGA 1 cut(s) 1189
XceI RCATGY 2 cut(s) 824, 1507
XmiI GTMKAC 1 cut(s) 1619
XspI CTAG 4 cut(s) 237, 323, 1190, 1353
ZrmI AGTACT 1 cut(s) 770
Zsp2I ATGCAT 2 cut(s) 508, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.