Prupe.6G016100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014307
Physical Location & Seq
Reverse (-)
1158925 .. 1160760
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G016100.1

Sequence Viewer

Length: 687 bp
ATGACGTCCAACAACATTGAAATGGAGCATGGGCAGTTTGGTAAATCTACTGCACAAATTGAAGTAACAGATAACACCCTGGTGGACAATTTGAATATGCTTCTCCAACCATTTAAATTGTCATTAAGTTCCAAGTACTCCAAGGCAGTTTTGTACCATTTGGAAGCCATCATAAACCAGTCACTCTACCAAGACTTTGAAAACTGTGTGTTTCAGAAGAATGGCTCACCAAAGCTTCTAGACCCTCAACAAGCTCGCCAAGCGCAGTTTTCATCATTTGTGGCGCTTAGAAATTTGAGCTGGAATGAAGTGTTAAGGAAGGGAACAAAGTATTACTGTGAGGAATTCAGTAAGTTTTGTGATCAGAAGATGAGTTGCATCATTACAACACTAAATTGGACTCGGCCATGGCCTGAGCAGGTTCTTCAAGCATTCTTTGTCGCTACCAAATGCATTTGGTTGCTTCATTTGCTTGCATTTTCATTCAATCCACCACTAGGAATTTTGAGGGTCGAAGAGAATAGGAGCTTTGATCCACATTACATGGAAGACATGTTCATGGATAGACAAAGATCGCATGGTTCAAGCCGAGTTAAGATTATGGTAATGCCAGGGTTTTATGTTCAGGACAAGGTTTTAAGGTGTAAAGTTCTTTGCAGGTACAAGTCTGCTGGTTCAATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.51

Weight (kDa)

8.79

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014307)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12900
fragaria_vesca FvH4_3g43680 FvH4_3g43680
malus_domestica MD11G1021700.v1.1
prunus_persica Prupe.6G016100_v2.0.a1
pyrus_communis pycom03g01740 pycom11g01760
rosa_chinensis RchiOBHm_Chr5g0078341
rosa_laevigata RLG00000036768
rosa_roxburghii Rroxscaffold_1G00003900
rosa_rugosa Rorug05G0460200
rosa_samantha Rh5AG514100 Rh5BG537000 Rh5CG560500 Rh5DG548600
rosa_wichuraiana Rw5G047730 Rw5G047870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 2 cut(s) 409, 648
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 3 cut(s) 292, 344, 501
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 137, 155, 662
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 8 cut(s) 20, 62, 94, 200, 428, 487, 585, 678
AjnI CCWGG 2 cut(s) 78, 610
AleI CACNNNNGTG 1 cut(s) 80
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
AluBI AGCT 4 cut(s) 235, 254, 300, 528
AluI AGCT 4 cut(s) 235, 254, 300, 528
AlwI GGATC 1 cut(s) 527
AoxI GGCC 2 cut(s) 404, 410
ApoI RAATTY 3 cut(s) 292, 344, 501
AspLEI GCGC 2 cut(s) 265, 286
AsuHPI GGTGA 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 555
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 80, 612
BclI TGATCA 1 cut(s) 361
BfaI CTAG 2 cut(s) 239, 497
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 2 cut(s) 409, 648
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 80, 612
BmrFI CCNGG 2 cut(s) 80, 612
BmsI GCATC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 555
Bpu10I CCTNAGC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 78, 141, 407, 611
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 2 cut(s) 80, 612
BseDI CCNNGG 4 cut(s) 78, 141, 407, 611
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 406, 412
BslI CCNNNNNNNGG 1 cut(s) 497
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 2 cut(s) 406, 412
Bsp143I GATC 3 cut(s) 361, 532, 572
Bsp19I CCATGG 1 cut(s) 407
BspANI GGCC 2 cut(s) 406, 412
BspCNI CTCAG 1 cut(s) 406
BspMI ACCTGC 2 cut(s) 409, 648
BspPI GGATC 1 cut(s) 527
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 4 cut(s) 78, 141, 407, 611
BssMI GATC 3 cut(s) 361, 532, 572
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 141, 407
Bst2UI CCWGG 2 cut(s) 80, 612
Bst4CI ACNGT 2 cut(s) 206, 338
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 256, 474
BstDEI CTNAG 2 cut(s) 287, 414
BstDSI CCRYGG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 265, 286
BstKTI GATC 3 cut(s) 364, 535, 575
BstMBI GATC 3 cut(s) 361, 532, 572
BstMWI GCNNNNNNNGC 2 cut(s) 260, 469
BstNI CCWGG 2 cut(s) 80, 612
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 2 cut(s) 78, 610
BstV2I GAAGAC 1 cut(s) 555
BsuRI GGCC 2 cut(s) 406, 412
BtgI CCRYGG 1 cut(s) 407
BveI ACCTGC 2 cut(s) 409, 648
Cac8I GCNNGC 2 cut(s) 256, 474
CfoI GCGC 2 cut(s) 265, 286
Csp6I GTAC 3 cut(s) 136, 154, 661
CviAII CATG 6 cut(s) 29, 408, 544, 553, 559, 578
CviJI RGCY 9 cut(s) 167, 225, 235, 254, 300, 406, 412, 528, 588
CviKI_1 RGCY 9 cut(s) 167, 225, 235, 254, 300, 406, 412, 528, 588
CviQI GTAC 3 cut(s) 136, 154, 661
DdeI CTNAG 2 cut(s) 287, 414
DpnI GATC 3 cut(s) 363, 534, 574
DpnII GATC 3 cut(s) 361, 532, 572
DraI TTTAAA 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 404
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 141, 407
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 78, 610
EcoT14I CCWWGG 2 cut(s) 141, 407
EcoT22I ATGCAT 1 cut(s) 455
ErhI CCWWGG 2 cut(s) 141, 407
FaeI CATG 6 cut(s) 32, 411, 547, 556, 562, 581
FatI CATG 6 cut(s) 28, 407, 543, 552, 558, 577
FbaI TGATCA 1 cut(s) 361
FspBI CTAG 2 cut(s) 239, 497
GlaI GCGC 2 cut(s) 264, 285
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 2 cut(s) 406, 412
HhaI GCGC 2 cut(s) 265, 286
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 32, 411, 547, 556, 562, 581
Hin6I GCGC 2 cut(s) 263, 284
HinP1I GCGC 2 cut(s) 263, 284
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 1 cut(s) 400
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 216, 366
Hpy188III TCNNGA 2 cut(s) 239, 626
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 206, 338
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 5 cut(s) 53, 378, 453, 476, 657
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 469
HpyF3I CTNAG 2 cut(s) 287, 414
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 32, 411, 547, 556, 562, 581
HspAI GCGC 2 cut(s) 263, 284
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 361, 532, 572
LmnI GCTCC 2 cut(s) 25, 525
LweI GCATC 1 cut(s) 387
MaeI CTAG 2 cut(s) 239, 497
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 64, 180
MalI GATC 3 cut(s) 363, 534, 574
MboI GATC 3 cut(s) 361, 532, 572
MboII GAAGA 5 cut(s) 229, 379, 416, 527, 560
MluCI AATT 7 cut(s) 57, 88, 116, 292, 344, 394, 501
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 2 cut(s) 33, 130
MnlI CCTC 3 cut(s) 255, 334, 501
Mph1103I ATGCAT 1 cut(s) 455
MseI TTAA 5 cut(s) 114, 125, 314, 594, 638
MslI CAYNNNNRTG 3 cut(s) 20, 80, 557
MspR9I CCNGG 2 cut(s) 80, 612
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 2 cut(s) 80, 612
MwoI GCNNNNNNNGC 2 cut(s) 260, 469
NcoI CCATGG 1 cut(s) 407
NdeII GATC 3 cut(s) 361, 532, 572
NlaIII CATG 6 cut(s) 32, 411, 547, 556, 562, 581
NmeAIII GCCGAG 2 cut(s) 382, 614
NmuCI GTSAC 1 cut(s) 180
NsiI ATGCAT 1 cut(s) 455
NspI RCATGY 1 cut(s) 556
OliI CACNNNNGTG 1 cut(s) 80
PciI ACATGT 1 cut(s) 552
PctI GAATGC 1 cut(s) 431
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PscI ACATGT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 78, 610
PspGI CCWGG 2 cut(s) 78, 610
RsaI GTAC 3 cut(s) 137, 155, 662
RsaNI GTAC 3 cut(s) 136, 154, 661
RseI CAYNNNNRTG 3 cut(s) 20, 80, 557
SaqAI TTAA 5 cut(s) 114, 125, 314, 594, 638
Sau3AI GATC 3 cut(s) 361, 532, 572
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 80, 612
SetI ASST 9 cut(s) 8, 237, 256, 302, 423, 530, 636, 644, 662
SfaNI GCATC 1 cut(s) 387
SmiI ATTTAAAT 1 cut(s) 115
SmiMI CAYNNNNRTG 3 cut(s) 20, 80, 557
Sse9I AATT 7 cut(s) 57, 88, 116, 292, 344, 394, 501
SspMI CTAG 2 cut(s) 239, 497
StyD4I CCNGG 2 cut(s) 78, 610
StyI CCWWGG 2 cut(s) 141, 407
SwaI ATTTAAAT 1 cut(s) 115
TaaI ACNGT 2 cut(s) 206, 338
TaiI ACGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 513
TasI AATT 7 cut(s) 57, 88, 116, 292, 344, 394, 501
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 5 cut(s) 114, 125, 314, 594, 638
Tru9I TTAA 5 cut(s) 114, 125, 314, 594, 638
TseFI GTSAC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 5 cut(s) 261, 321, 455, 471, 547
XapI RAATTY 3 cut(s) 292, 344, 501
XbaI TCTAGA 1 cut(s) 238
XceI RCATGY 1 cut(s) 556
XspI CTAG 2 cut(s) 239, 497
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.