WEB family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G40020 |
| fragaria_vesca | FvH4_1g20290 |
| malus_domestica | MD03G1184100.v1.1 MD11G1200900.v1.1 |
| prunus_persica | Prupe.6G192500_v2.0.a1 |
| pyrus_communis | pycom03g13740 |
| rosa_chinensis | RchiOBHm_Chr2g0112431 |
| rosa_laevigata | RLG00000017980 |
| rosa_multiflora | Rmu_co8429047.1_g000001 Rmu_sc0004467.1_g000073 Rmu_sc0004467.1_g000074 |
| rosa_roxburghii | Rroxscaffold_2G00131450 |
| rosa_rugosa | Rorug02G0180500 |
| rosa_samantha | Rh2AG233900 Rh2BG247200 Rh2CG238400 Rh2DG241500 |
| rosa_wichuraiana | Rw2G018110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2690 |
| AccII | CGCG | 3 cut(s) | 495, 1857, 2559 |
| AciI | CCGC | 7 cut(s) | 239, 734, 821, 2312, 2321, 2557, 2559 |
| AclWI | GGATC | 1 cut(s) | 623 |
| AcuI | CTGAAG | 4 cut(s) | 290, 1301, 1455, 1768 |
| AfaI | GTAC | 2 cut(s) | 1407, 2713 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 174, 1354, 2321, 2538 |
| AflII | CTTAAG | 2 cut(s) | 1865, 2429 |
| AflIII | ACRYGT | 1 cut(s) | 569 |
| AgeI | ACCGGT | 1 cut(s) | 1721 |
| AjnI | CCWGG | 1 cut(s) | 1667 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1445, 1477 |
| Alw21I | GWGCWC | 7 cut(s) | 336, 687, 804, 891, 1554, 1564, 2439 |
| Alw26I | GTCTC | 3 cut(s) | 393, 1307, 1802 |
| AlwI | GGATC | 1 cut(s) | 623 |
| Ama87I | CYCGRG | 1 cut(s) | 305 |
| AoxI | GGCC | 3 cut(s) | 165, 318, 1965 |
| ApeKI | GCWGC | 3 cut(s) | 1664, 1766, 2018 |
| AsiGI | ACCGGT | 1 cut(s) | 1721 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 405, 669, 786, 2566 |
| AspLEI | GCGC | 3 cut(s) | 91, 914, 1857 |
| AspS9I | GGNCC | 1 cut(s) | 2630 |
| AsuC2I | CCSGG | 1 cut(s) | 2538 |
| AsuHPI | GGTGA | 9 cut(s) | 9, 94, 1108, 1352, 2546, 2651, 2745, 2769, 2790 |
| AvaI | CYCGRG | 1 cut(s) | 305 |
| AvaII | GGWCC | 1 cut(s) | 2630 |
| BanII | GRGCYC | 6 cut(s) | 336, 687, 804, 838, 891, 2439 |
| Bbv12I | GWGCWC | 7 cut(s) | 336, 687, 804, 891, 1554, 1564, 2439 |
| BbvI | GCAGC | 3 cut(s) | 1651, 1753, 2030 |
| BccI | CCATC | 7 cut(s) | 113, 988, 2191, 2582, 2621, 2734, 2758 |
| BceAI | ACGGC | 3 cut(s) | 252, 1473, 2491 |
| BciT130I | CCWGG | 1 cut(s) | 1669 |
| BciVI | GTATCC | 3 cut(s) | 2287, 2728, 2752 |
| BclI | TGATCA | 3 cut(s) | 1113, 1258, 2617 |
| BcnI | CCSGG | 1 cut(s) | 2538 |
| BcoDI | GTCTC | 3 cut(s) | 393, 1307, 1802 |
| BfaI | CTAG | 4 cut(s) | 896, 983, 1805, 2624 |
| BfoI | RGCGCY | 1 cut(s) | 915 |
| BfrI | CTTAAG | 2 cut(s) | 1865, 2429 |
| BfuI | GTATCC | 3 cut(s) | 2287, 2728, 2752 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 920 |
| BglII | AGATCT | 1 cut(s) | 2683 |
| BisI | GCNGC | 3 cut(s) | 1665, 1767, 2019 |
| BlsI | GCNGC | 3 cut(s) | 1666, 1768, 2020 |
| BmcAI | AGTACT | 1 cut(s) | 1407 |
| Bme1390I | CCNGG | 2 cut(s) | 1669, 2538 |
| Bme18I | GGWCC | 1 cut(s) | 2630 |
| BmeT110I | CYCGRG | 1 cut(s) | 305 |
| BmgT120I | GGNCC | 1 cut(s) | 2630 |
| BmiI | GGNNCC | 3 cut(s) | 2724, 2748, 2793 |
| BmrFI | CCNGG | 2 cut(s) | 1669, 2538 |
| BmsI | GCATC | 4 cut(s) | 27, 439, 1253, 2317 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1163, 1195, 1349, 1381, 2516, 2548 |
| BpmI | CTGGAG | 2 cut(s) | 533, 1568 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2214 |
| BpuEI | CTTGAG | 8 cut(s) | 320, 354, 1154, 1289, 1540, 1902, 1968, 2619 |
| BpuMI | CCSGG | 1 cut(s) | 2538 |
| BsaBI | GATNNNNATC | 2 cut(s) | 135, 2616 |
| BsaJI | CCNNGG | 9 cut(s) | 21, 534, 918, 1002, 1143, 1374, 2361, 2537, 2557 |
| BsaWI | WCCGGW | 2 cut(s) | 1721, 2755 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 233, 263, 323, 353 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 174, 1354, 2321, 2538 |
| Bse118I | RCCGGY | 1 cut(s) | 1721 |
| Bse1I | ACTGG | 6 cut(s) | 516, 609, 696, 813, 1510, 1626 |
| Bse3DI | GCAATG | 2 cut(s) | 1659, 1911 |
| Bse8I | GATNNNNATC | 2 cut(s) | 135, 2616 |
| BseBI | CCWGG | 1 cut(s) | 1669 |
| BseDI | CCNNGG | 9 cut(s) | 21, 534, 918, 1002, 1143, 1374, 2361, 2537, 2557 |
| BseGI | GGATG | 7 cut(s) | 454, 1024, 1471, 1630, 2284, 2332, 2371 |
| BseJI | GATNNNNATC | 2 cut(s) | 135, 2616 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 174, 1354, 2321, 2538 |
| BseMI | GCAATG | 2 cut(s) | 1659, 1911 |
| BseMII | CTCAG | 4 cut(s) | 212, 234, 735, 1302 |
| BseNI | ACTGG | 6 cut(s) | 516, 609, 696, 813, 1510, 1626 |
| BseRI | GAGGAG | 6 cut(s) | 83, 296, 530, 1976, 2135, 2180 |
| BseXI | GCAGC | 3 cut(s) | 1651, 1753, 2030 |
| BsgI | GTGCAG | 1 cut(s) | 1752 |
| Bsh1236I | CGCG | 3 cut(s) | 495, 1857, 2559 |
| BshFI | GGCC | 3 cut(s) | 167, 320, 1967 |
| BshTI | ACCGGT | 1 cut(s) | 1721 |
| BsiHKAI | GWGCWC | 7 cut(s) | 336, 687, 804, 891, 1554, 1564, 2439 |
| BsiHKCI | CYCGRG | 1 cut(s) | 305 |
| BsiSI | CCGG | 4 cut(s) | 1722, 2537, 2732, 2756 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 174, 1354, 2321, 2538 |
| BsmAI | GTCTC | 3 cut(s) | 393, 1307, 1802 |
| BsmI | GAATGC | 2 cut(s) | 259, 736 |
| BsnI | GGCC | 3 cut(s) | 167, 320, 1967 |
| BsoBI | CYCGRG | 1 cut(s) | 305 |
| Bsp1286I | GDGCHC | 8 cut(s) | 336, 687, 804, 838, 891, 1554, 1564, 2439 |
| Bsp143I | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| Bsp68I | TCGCGA | 1 cut(s) | 495 |
| BspACI | CCGC | 7 cut(s) | 239, 734, 821, 2312, 2321, 2557, 2559 |
| BspANI | GGCC | 3 cut(s) | 167, 320, 1967 |
| BspCNI | CTCAG | 4 cut(s) | 211, 233, 736, 1303 |
| BspFNI | CGCG | 3 cut(s) | 495, 1857, 2559 |
| BspHI | TCATGA | 1 cut(s) | 2023 |
| BspLI | GGNNCC | 3 cut(s) | 2724, 2748, 2793 |
| BspPI | GGATC | 1 cut(s) | 623 |
| BspQI | GCTCTTC | 2 cut(s) | 266, 1738 |
| BspTI | CTTAAG | 2 cut(s) | 1865, 2429 |
| BsrDI | GCAATG | 2 cut(s) | 1659, 1911 |
| BsrFI | RCCGGY | 1 cut(s) | 1721 |
| BsrI | ACTGG | 6 cut(s) | 516, 609, 696, 813, 1510, 1626 |
| BssAI | RCCGGY | 1 cut(s) | 1721 |
| BssECI | CCNNGG | 9 cut(s) | 21, 534, 918, 1002, 1143, 1374, 2361, 2537, 2557 |
| BssMI | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| BssT1I | CCWWGG | 4 cut(s) | 21, 1143, 1374, 2361 |
| Bst2UI | CCWGG | 1 cut(s) | 1669 |
| Bst4CI | ACNGT | 3 cut(s) | 471, 855, 2049 |
| Bst6I | CTCTTC | 7 cut(s) | 60, 266, 1152, 1683, 1738, 1746, 2572 |
| BstAFI | CTTAAG | 2 cut(s) | 1865, 2429 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 434, 1892 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 1872 |
| BstDEI | CTNAG | 6 cut(s) | 179, 198, 220, 744, 1311, 2214 |
| BstDSI | CCRYGG | 1 cut(s) | 2557 |
| BstF5I | GGATG | 7 cut(s) | 454, 1024, 1471, 1630, 2284, 2332, 2371 |
| BstFNI | CGCG | 3 cut(s) | 495, 1857, 2559 |
| BstH2I | RGCGCY | 1 cut(s) | 915 |
| BstHHI | GCGC | 3 cut(s) | 91, 914, 1857 |
| BstKTI | GATC | 7 cut(s) | 423, 631, 1116, 1261, 1471, 2620, 2686 |
| BstMAI | GTCTC | 3 cut(s) | 393, 1307, 1802 |
| BstMBI | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| BstNI | CCWGG | 1 cut(s) | 1669 |
| BstNSI | RCATGY | 1 cut(s) | 573 |
| BstSCI | CCNGG | 2 cut(s) | 1667, 2536 |
| BstUI | CGCG | 3 cut(s) | 495, 1857, 2559 |
| BstV1I | GCAGC | 3 cut(s) | 1651, 1753, 2030 |
| BstX2I | RGATCY | 1 cut(s) | 2683 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 328 |
| BstYI | RGATCY | 1 cut(s) | 2683 |
| BsuI | GTATCC | 3 cut(s) | 2287, 2728, 2752 |
| BsuRI | GGCC | 3 cut(s) | 167, 320, 1967 |
| BtgI | CCRYGG | 1 cut(s) | 2557 |
| BtgZI | GCGATG | 3 cut(s) | 1598, 2493, 2712 |
| BtsCI | GGATG | 7 cut(s) | 454, 1024, 1471, 1630, 2284, 2332, 2371 |
| BtsI | GCAGTG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 2 cut(s) | 108, 1481 |
| BtuMI | TCGCGA | 1 cut(s) | 495 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 1872 |
| CciI | TCATGA | 1 cut(s) | 2023 |
| CfoI | GCGC | 3 cut(s) | 91, 914, 1857 |
| Cfr10I | RCCGGY | 1 cut(s) | 1721 |
| Cfr13I | GGNCC | 1 cut(s) | 2630 |
| Cfr42I | CCGCGG | 1 cut(s) | 2560 |
| CseI | GACGC | 1 cut(s) | 2384 |
| Csp6I | GTAC | 2 cut(s) | 1406, 2712 |
| CspAI | ACCGGT | 1 cut(s) | 1721 |
| CviQI | GTAC | 2 cut(s) | 1406, 2712 |
| DdeI | CTNAG | 6 cut(s) | 179, 198, 220, 744, 1311, 2214 |
| DpnI | GATC | 7 cut(s) | 422, 630, 1115, 1260, 1470, 2619, 2685 |
| DpnII | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| Eam1104I | CTCTTC | 7 cut(s) | 60, 266, 1152, 1683, 1738, 1746, 2572 |
| EarI | CTCTTC | 7 cut(s) | 60, 266, 1152, 1683, 1738, 1746, 2572 |
| EciI | GGCGGA | 1 cut(s) | 254 |
| Ecl136II | GAGCTC | 5 cut(s) | 334, 685, 802, 889, 2437 |
| Eco130I | CCWWGG | 4 cut(s) | 21, 1143, 1374, 2361 |
| Eco147I | AGGCCT | 1 cut(s) | 1967 |
| Eco24I | GRGCYC | 6 cut(s) | 336, 687, 804, 838, 891, 2439 |
| Eco47I | GGWCC | 1 cut(s) | 2630 |
| Eco53kI | GAGCTC | 5 cut(s) | 334, 685, 802, 889, 2437 |
| Eco57I | CTGAAG | 4 cut(s) | 290, 1301, 1455, 1768 |
| Eco88I | CYCGRG | 1 cut(s) | 305 |
| EcoICRI | GAGCTC | 5 cut(s) | 334, 685, 802, 889, 2437 |
| EcoRI | GAATTC | 7 cut(s) | 405, 489, 669, 786, 960, 1047, 1098 |
| EcoRII | CCWGG | 1 cut(s) | 1667 |
| EcoT14I | CCWWGG | 4 cut(s) | 21, 1143, 1374, 2361 |
| EcoT38I | GRGCYC | 6 cut(s) | 336, 687, 804, 838, 891, 2439 |
| ErhI | CCWWGG | 4 cut(s) | 21, 1143, 1374, 2361 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 1509, 1541, 2689, 2721, 2779 |
| FauI | CCCGC | 1 cut(s) | 2314 |
| FbaI | TGATCA | 3 cut(s) | 1113, 1258, 2617 |
| Fnu4HI | GCNGC | 3 cut(s) | 1665, 1767, 2019 |
| FokI | GGATG | 7 cut(s) | 461, 1031, 1478, 1637, 2291, 2339, 2378 |
| FriOI | GRGCYC | 6 cut(s) | 336, 687, 804, 838, 891, 2439 |
| Fsp4HI | GCNGC | 3 cut(s) | 1665, 1767, 2019 |
| FspBI | CTAG | 4 cut(s) | 896, 983, 1805, 2624 |
| GlaI | GCGC | 3 cut(s) | 90, 913, 1856 |
| GluI | GCNGC | 3 cut(s) | 1665, 1767, 2019 |
| GsuI | CTGGAG | 2 cut(s) | 533, 1568 |
| HaeII | RGCGCY | 1 cut(s) | 915 |
| HaeIII | GGCC | 3 cut(s) | 167, 320, 1967 |
| HapII | CCGG | 4 cut(s) | 1722, 2537, 2732, 2756 |
| HgaI | GACGC | 1 cut(s) | 2384 |
| HhaI | GCGC | 3 cut(s) | 91, 914, 1857 |
| Hin6I | GCGC | 3 cut(s) | 89, 912, 1855 |
| HinP1I | GCGC | 3 cut(s) | 89, 912, 1855 |
| HincII | GTYRAC | 1 cut(s) | 2473 |
| HindII | GTYRAC | 1 cut(s) | 2473 |
| HindIII | AAGCTT | 2 cut(s) | 462, 2661 |
| HpaII | CCGG | 4 cut(s) | 1722, 2537, 2732, 2756 |
| HphI | GGTGA | 9 cut(s) | 9, 94, 1108, 1352, 2546, 2651, 2745, 2769, 2790 |
| Hpy166II | GTNNAC | 3 cut(s) | 531, 2473, 2580 |
| Hpy8I | GTNNAC | 3 cut(s) | 531, 2473, 2580 |
| HpyCH4III | ACNGT | 3 cut(s) | 471, 855, 2049 |
| HpyCH4IV | ACGT | 4 cut(s) | 171, 862, 1370, 2576 |
| HpyF3I | CTNAG | 6 cut(s) | 179, 198, 220, 744, 1311, 2214 |
| HpySE526I | ACGT | 4 cut(s) | 171, 862, 1370, 2576 |
| HspAI | GCGC | 3 cut(s) | 89, 912, 1855 |
| Ksp22I | TGATCA | 3 cut(s) | 1113, 1258, 2617 |
| KspI | CCGCGG | 1 cut(s) | 2560 |
| Kzo9I | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| LguI | GCTCTTC | 2 cut(s) | 266, 1738 |
| Lsp1109I | GCAGC | 3 cut(s) | 1651, 1753, 2030 |
| LweI | GCATC | 4 cut(s) | 27, 439, 1253, 2317 |
| MaeI | CTAG | 4 cut(s) | 896, 983, 1805, 2624 |
| MaeII | ACGT | 4 cut(s) | 171, 862, 1370, 2576 |
| MaeIII | GTNAC | 3 cut(s) | 659, 776, 1037 |
| MalI | GATC | 7 cut(s) | 422, 630, 1115, 1260, 1470, 2619, 2685 |
| MboI | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| MfeI | CAATTG | 1 cut(s) | 92 |
| MflI | RGATCY | 1 cut(s) | 2683 |
| MhlI | GDGCHC | 8 cut(s) | 336, 687, 804, 838, 891, 1554, 1564, 2439 |
| MlyI | GAGTC | 7 cut(s) | 212, 302, 731, 1309, 1700, 1929, 2207 |
| MmeI | TCCRAC | 2 cut(s) | 396, 1443 |
| MroXI | GAANNNNTTC | 4 cut(s) | 405, 669, 786, 2566 |
| MseI | TTAA | 9 cut(s) | 227, 1410, 1421, 1589, 1731, 1866, 1877, 2042, 2430 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1254, 1578, 2607, 2625 |
| MspA1I | CMGCKG | 1 cut(s) | 2559 |
| MspCI | CTTAAG | 2 cut(s) | 1865, 2429 |
| MspI | CCGG | 4 cut(s) | 1722, 2537, 2732, 2756 |
| MspR9I | CCNGG | 2 cut(s) | 1669, 2538 |
| MunI | CAATTG | 1 cut(s) | 92 |
| Mva1269I | GAATGC | 2 cut(s) | 259, 736 |
| MvaI | CCWGG | 1 cut(s) | 1669 |
| MvnI | CGCG | 3 cut(s) | 495, 1857, 2559 |
| NciI | CCSGG | 1 cut(s) | 2538 |
| NdeII | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| NlaIV | GGNNCC | 3 cut(s) | 2724, 2748, 2793 |
| NmuCI | GTSAC | 3 cut(s) | 659, 776, 1037 |
| NruI | TCGCGA | 1 cut(s) | 495 |
| NspI | RCATGY | 1 cut(s) | 573 |
| PaeR7I | CTCGAG | 1 cut(s) | 305 |
| PagI | TCATGA | 1 cut(s) | 2023 |
| PceI | AGGCCT | 1 cut(s) | 1967 |
| PciI | ACATGT | 1 cut(s) | 569 |
| PciSI | GCTCTTC | 2 cut(s) | 266, 1738 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 168, 2735 |
| PctI | GAATGC | 2 cut(s) | 259, 736 |
| PdmI | GAANNNNTTC | 4 cut(s) | 405, 669, 786, 2566 |
| PfeI | GAWTC | 6 cut(s) | 1106, 1214, 1333, 2060, 2598, 2676 |
| PinAI | ACCGGT | 1 cut(s) | 1721 |
| PkrI | GCNGC | 3 cut(s) | 1666, 1768, 2020 |
| PleI | GAGTC | 7 cut(s) | 212, 301, 730, 1308, 1699, 1929, 2206 |
| PpsI | GAGTC | 7 cut(s) | 212, 301, 730, 1308, 1699, 1929, 2206 |
| PscI | ACATGT | 1 cut(s) | 569 |
| PsiI | TTATAA | 1 cut(s) | 2690 |
| Psp124BI | GAGCTC | 5 cut(s) | 336, 687, 804, 891, 2439 |
| Psp6I | CCWGG | 1 cut(s) | 1667 |
| PspGI | CCWGG | 1 cut(s) | 1667 |
| PspN4I | GGNNCC | 3 cut(s) | 2724, 2748, 2793 |
| PspPI | GGNCC | 1 cut(s) | 2630 |
| PspXI | VCTCGAGB | 1 cut(s) | 305 |
| PsuI | RGATCY | 1 cut(s) | 2683 |
| RruI | TCGCGA | 1 cut(s) | 495 |
| RsaI | GTAC | 2 cut(s) | 1407, 2713 |
| RsaNI | GTAC | 2 cut(s) | 1406, 2712 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1254, 1578, 2607, 2625 |
| SacI | GAGCTC | 5 cut(s) | 336, 687, 804, 891, 2439 |
| SacII | CCGCGG | 1 cut(s) | 2560 |
| SapI | GCTCTTC | 2 cut(s) | 266, 1738 |
| SaqAI | TTAA | 9 cut(s) | 227, 1410, 1421, 1589, 1731, 1866, 1877, 2042, 2430 |
| SatI | GCNGC | 3 cut(s) | 1665, 1767, 2019 |
| Sau3AI | GATC | 7 cut(s) | 420, 628, 1113, 1258, 1468, 2617, 2683 |
| Sau96I | GGNCC | 1 cut(s) | 2630 |
| ScaI | AGTACT | 1 cut(s) | 1407 |
| SchI | GAGTC | 7 cut(s) | 212, 302, 731, 1309, 1700, 1929, 2207 |
| ScrFI | CCNGG | 2 cut(s) | 1669, 2538 |
| SduI | GDGCHC | 8 cut(s) | 336, 687, 804, 838, 891, 1554, 1564, 2439 |
| SfaNI | GCATC | 4 cut(s) | 27, 439, 1253, 2317 |
| Sfr274I | CTCGAG | 1 cut(s) | 305 |
| Sfr303I | CCGCGG | 1 cut(s) | 2560 |
| SgrBI | CCGCGG | 1 cut(s) | 2560 |
| SinI | GGWCC | 1 cut(s) | 2630 |
| SlaI | CTCGAG | 1 cut(s) | 305 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1254, 1578, 2607, 2625 |
| SseBI | AGGCCT | 1 cut(s) | 1967 |
| SsiI | CCGC | 7 cut(s) | 239, 734, 821, 2312, 2321, 2557, 2559 |
| SspMI | CTAG | 4 cut(s) | 896, 983, 1805, 2624 |
| SstI | GAGCTC | 5 cut(s) | 336, 687, 804, 891, 2439 |
| StuI | AGGCCT | 1 cut(s) | 1967 |
| StyD4I | CCNGG | 2 cut(s) | 1667, 2536 |
| StyI | CCWWGG | 4 cut(s) | 21, 1143, 1374, 2361 |
| TaaI | ACNGT | 3 cut(s) | 471, 855, 2049 |
| TaiI | ACGT | 4 cut(s) | 174, 865, 1373, 2579 |
| TaqI | TCGA | 8 cut(s) | 139, 251, 306, 1380, 1832, 1933, 2201, 2516 |
| TatI | WGTACW | 1 cut(s) | 1405 |
| TfiI | GAWTC | 6 cut(s) | 1106, 1214, 1333, 2060, 2598, 2676 |
| Tru1I | TTAA | 9 cut(s) | 227, 1410, 1421, 1589, 1731, 1866, 1877, 2042, 2430 |
| Tru9I | TTAA | 9 cut(s) | 227, 1410, 1421, 1589, 1731, 1866, 1877, 2042, 2430 |
| TscAI | CASTG | 2 cut(s) | 108, 1488 |
| TseFI | GTSAC | 3 cut(s) | 659, 776, 1037 |
| TseI | GCWGC | 3 cut(s) | 1664, 1766, 2018 |
| Tsp45I | GTSAC | 3 cut(s) | 659, 776, 1037 |
| TspGWI | ACGGA | 2 cut(s) | 632, 1031 |
| TspRI | CASTG | 2 cut(s) | 108, 1488 |
| Vha464I | CTTAAG | 2 cut(s) | 1865, 2429 |
| VpaK11BI | GGWCC | 1 cut(s) | 2630 |
| XbaI | TCTAGA | 2 cut(s) | 1804, 2623 |
| XceI | RCATGY | 1 cut(s) | 573 |
| XhoI | CTCGAG | 1 cut(s) | 305 |
| XmnI | GAANNNNTTC | 4 cut(s) | 405, 669, 786, 2566 |
| XspI | CTAG | 4 cut(s) | 896, 983, 1805, 2624 |
| ZrmI | AGTACT | 1 cut(s) | 1407 |