Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004467.1

Orthogroup ID

OG0012986

Physical Location & Seq

Genomic Coordinates Forward (+)

302853 .. 304169

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004467.1_g000073.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atgcagcaacatatggagcaacctgaagagaaagatcgcaagatgaaagagcaattacatgcagtagaggtagaaagagatcgagcccttgatgaactaagagagatgaaaaaggtggcacaggaggctaacatgcggctaagtgaagcattgtcaactcataataaggagaatatagactcgttgaaagttgaacttggaaaggccaaagatttggagctcaaactggcagagaatgtggaaaacgctgaggctaagacgaaggttttagtgtctgagagcgaggaacgaattcaagaattgcagcagaaactgacagagaatgcaaaaacctcagagtctcagatgaaggctttattgtccgaaagagaggaaagaattcgggagttagagctcaaactgtcacagaatgtgaaaacctccgatgctcaggctgaaataaagacttcattgtctgaaagagaagaaagaattcgggaattggagctcaaactggcagtgaacacggaaagctcagaggctcacaggaaggctttattgtccgaaagtgcagaaataataaggaaattggagatcaaattggcagagaatgttgaaaccaatgaggctcagttgaaaactttgttttgtcaaagtgaggaaagaattcgggaactcgagatggaaatagaaaaaagaaggaaatcagaagcaagaatccttgattctttgatcacacagacaaaccaactggagcaaactaaggttttacttgaagaatcaaattctgaaattacttctcttcaaaagaaattggagaaatgggaagaggagtccgtgcagagcagtgatcttagcacatcacattttcaggacagccatgatactaatgtttccatgagggatgatttagagagtctcaggtccgagcttcagttgacaaaggagaatctggttgattctcaaaagaaggagcaacttgcgtctttgaaggttgagaaattacttgaggagatacgtgcactaaaacatgagctgaagttgacagccgaagctgaagaaaacggaaagaaggcaatggatgacttggctattgctctaaaagaagttgcaacggaagccaatcagttgaaggactcactgcagatgaccaaggccgagttagagcactcaagggaacaagaacagtgtttgaatgtaatgctaaagaccaatgaggaagattttaaattgatgttggatgaagtaaggaaagaagctgagaggcacaaaaacactgctgccaggttgaaaatagaacacgaagagtcggttatggcacggaagccaatcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

438

Amino Acids

50.75

Weight (kDa)

5.1

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40020
fragaria_vesca	FvH4_1g20290
malus_domestica	MD03G1184100.v1.1 MD11G1200900.v1.1
prunus_persica	Prupe.6G192500_v2.0.a1
pyrus_communis	pycom03g13740
rosa_chinensis	RchiOBHm_Chr2g0112431
rosa_laevigata	RLG00000017980
rosa_multiflora	Rmu_co8429047.1_g000001 Rmu_sc0004467.1_g000073 Rmu_sc0004467.1_g000074
rosa_roxburghii	Rroxscaffold_2G00131450
rosa_rugosa	Rorug02G0180500
rosa_samantha	Rh2AG233900 Rh2BG247200 Rh2CG238400 Rh2DG241500
rosa_wichuraiana	Rw2G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	451
AciI	CCGC	1 cut(s)	136
AcsI	RAATTY	5 cut(s)	291, 378, 471, 645, 763
AcuI	CTGAAG	4 cut(s)	45, 896, 1037, 1056
AjnI	CCWGG	1 cut(s)	1262
AluBI	AGCT	8 cut(s)	220, 394, 487, 513, 910, 1015, 1034, 1238
AluI	AGCT	8 cut(s)	220, 394, 487, 513, 910, 1015, 1034, 1238
Alw21I	GWGCWC	5 cut(s)	222, 396, 489, 1003, 1149
Alw26I	GTCTC	2 cut(s)	345, 902
Alw44I	GTGCAC	1 cut(s)	999
AlwNI	CAGNNNCTG	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	2 cut(s)	204, 1134
ApaLI	GTGCAC	1 cut(s)	999
ApeKI	GCWGC	3 cut(s)	4, 304, 1259
ApoI	RAATTY	5 cut(s)	291, 378, 471, 645, 763
Asp700I	GAANNNNTTC	4 cut(s)	291, 378, 471, 645
AspS9I	GGNCC	1 cut(s)	903
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	903
BaeGI	GKGCMC	1 cut(s)	1003
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BanII	GRGCYC	4 cut(s)	88, 222, 396, 489
Bbv12I	GWGCWC	5 cut(s)	222, 396, 489, 1003, 1149
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	16, 316, 1246
BccI	CCATC	1 cut(s)	655
BciT130I	CCWGG	1 cut(s)	1264
BclI	TGATCA	1 cut(s)	711
BcoDI	GTCTC	2 cut(s)	345, 902
BfmI	CTRYAG	1 cut(s)	1121
BisI	GCNGC	4 cut(s)	5, 137, 305, 1260
BlsI	GCNGC	4 cut(s)	6, 138, 306, 1261
Bme1390I	CCNGG	1 cut(s)	1264
Bme18I	GGWCC	1 cut(s)	903
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	903
BmrFI	CCNGG	1 cut(s)	1264
BmsI	GCATC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	752
Bpu10I	CCTNAGC	2 cut(s)	249, 429
BpuEI	CTTGAG	2 cut(s)	1007, 1135
BsaAI	YACGTR	1 cut(s)	998
BsaJI	CCNNGG	1 cut(s)	1131
Bse1I	ACTGG	3 cut(s)	231, 498, 735
Bse3DI	GCAATG	1 cut(s)	1062
BseBI	CCWGG	1 cut(s)	1264
BseDI	CCNNGG	1 cut(s)	1131
BseGI	GGATG	3 cut(s)	889, 1066, 1225
BseMI	GCAATG	1 cut(s)	1062
BseMII	CTCAG	9 cut(s)	240, 267, 348, 356, 443, 528, 623, 913, 1230
BseNI	ACTGG	3 cut(s)	231, 498, 735
BseRI	GAGGAG	2 cut(s)	824, 1004
BseSI	GKGCMC	1 cut(s)	1003
BseXI	GCAGC	3 cut(s)	16, 316, 1246
BsgI	GTGCAG	2 cut(s)	570, 839
BshFI	GGCC	2 cut(s)	206, 1136
BsiHKAI	GWGCWC	5 cut(s)	222, 396, 489, 1003, 1149
BsiHKCI	CYCGRG	1 cut(s)	656
BsmAI	GTCTC	2 cut(s)	345, 902
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	206, 1136
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	6 cut(s)	88, 222, 396, 489, 1003, 1149
Bsp143I	GATC	5 cut(s)	34, 79, 573, 711, 829
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	2 cut(s)	206, 1136
BspCNI	CTCAG	9 cut(s)	241, 268, 347, 355, 442, 527, 622, 912, 1231
BspMAI	CTGCAG	1 cut(s)	1125
BsrDI	GCAATG	1 cut(s)	1062
BsrI	ACTGG	3 cut(s)	231, 498, 735
BssECI	CCNNGG	1 cut(s)	1131
BssMI	GATC	5 cut(s)	34, 79, 573, 711, 829
BssT1I	CCWWGG	1 cut(s)	1131
Bst2UI	CCWGG	1 cut(s)	1264
Bst4CI	ACNGT	2 cut(s)	402, 1167
Bst6I	CTCTTC	4 cut(s)	21, 786, 801, 1278
BstBAI	YACGTR	1 cut(s)	998
BstF5I	GGATG	3 cut(s)	889, 1066, 1225
BstKTI	GATC	5 cut(s)	37, 82, 576, 714, 832
BstMAI	GTCTC	2 cut(s)	345, 902
BstMBI	GATC	5 cut(s)	34, 79, 573, 711, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 1097
BstNI	CCWGG	1 cut(s)	1264
BstNSI	RCATGY	2 cut(s)	62, 136
BstSCI	CCNGG	1 cut(s)	1262
BstSFI	CTRYAG	1 cut(s)	1121
BstSLI	GKGCMC	1 cut(s)	1003
BstV1I	GCAGC	3 cut(s)	16, 316, 1246
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	206, 1136
BtsCI	GGATG	3 cut(s)	889, 1066, 1225
BtsI	GCAGTG	4 cut(s)	504, 832, 1118, 1254
BtsIMutI	CAGTG	5 cut(s)	504, 832, 1118, 1172, 1254
CaiI	CAGNNNCTG	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	903
CseI	GACGC	1 cut(s)	951
CviAII	CATG	5 cut(s)	59, 133, 860, 877, 1010
DpnI	GATC	5 cut(s)	36, 81, 575, 713, 831
DpnII	GATC	5 cut(s)	34, 79, 573, 711, 829
DraI	TTTAAA	1 cut(s)	1207
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
Eam1104I	CTCTTC	4 cut(s)	21, 786, 801, 1278
EarI	CTCTTC	4 cut(s)	21, 786, 801, 1278
Ecl136II	GAGCTC	3 cut(s)	220, 394, 487
Eco130I	CCWWGG	1 cut(s)	1131
Eco24I	GRGCYC	4 cut(s)	88, 222, 396, 489
Eco47I	GGWCC	1 cut(s)	903
Eco53kI	GAGCTC	3 cut(s)	220, 394, 487
Eco57I	CTGAAG	4 cut(s)	45, 896, 1037, 1056
Eco88I	CYCGRG	1 cut(s)	656
EcoICRI	GAGCTC	3 cut(s)	220, 394, 487
EcoRI	GAATTC	4 cut(s)	291, 378, 471, 645
EcoRII	CCWGG	1 cut(s)	1262
EcoT14I	CCWWGG	1 cut(s)	1131
EcoT38I	GRGCYC	4 cut(s)	88, 222, 396, 489
ErhI	CCWWGG	1 cut(s)	1131
FaeI	CATG	5 cut(s)	62, 136, 863, 880, 1013
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	5 cut(s)	58, 132, 859, 876, 1009
FauNDI	CATATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	4 cut(s)	5, 137, 305, 1260
FokI	GGATG	3 cut(s)	896, 1073, 1232
FriOI	GRGCYC	4 cut(s)	88, 222, 396, 489
Fsp4HI	GCNGC	4 cut(s)	5, 137, 305, 1260
GluI	GCNGC	4 cut(s)	5, 137, 305, 1260
GsuI	CTGGAG	1 cut(s)	752
HaeIII	GGCC	2 cut(s)	206, 1136
HgaI	GACGC	1 cut(s)	951
Hin1II	CATG	5 cut(s)	62, 136, 863, 880, 1013
HincII	GTYRAC	3 cut(s)	156, 918, 1023
HindII	GTYRAC	3 cut(s)	156, 918, 1023
Hpy166II	GTNNAC	5 cut(s)	156, 502, 918, 1001, 1023
Hpy188III	TCNNGA	6 cut(s)	296, 383, 476, 650, 658, 851
Hpy8I	GTNNAC	5 cut(s)	156, 502, 918, 1001, 1023
HpyAV	CCTTC	8 cut(s)	256, 343, 523, 672, 943, 964, 1045, 1105
HpyCH4III	ACNGT	2 cut(s)	402, 1167
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	9 cut(s)	4, 62, 304, 326, 551, 820, 1001, 1091, 1123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 1097
HpySE526I	ACGT	1 cut(s)	997
Hsp92II	CATG	5 cut(s)	62, 136, 863, 880, 1013
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	5 cut(s)	34, 79, 573, 711, 829
LmnI	GCTCC	5 cut(s)	16, 217, 484, 733, 952
Lsp1109I	GCAGC	3 cut(s)	16, 316, 1246
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	997
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	5 cut(s)	36, 81, 575, 713, 831
MboI	GATC	5 cut(s)	34, 79, 573, 711, 829
MboII	GAAGA	8 cut(s)	38, 476, 767, 773, 818, 1049, 1211, 1295
MhlI	GDGCHC	6 cut(s)	88, 222, 396, 489, 1003, 1149
MlyI	GAGTC	6 cut(s)	173, 347, 821, 904, 1109, 1295
MmeI	TCCRAC	1 cut(s)	1197
MroXI	GAANNNNTTC	4 cut(s)	291, 378, 471, 645
MseI	TTAA	1 cut(s)	1206
MspR9I	CCNGG	1 cut(s)	1264
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	1264
MwoI	GCNNNNNNNGC	2 cut(s)	125, 1097
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	5 cut(s)	34, 79, 573, 711, 829
NlaIII	CATG	5 cut(s)	62, 136, 863, 880, 1013
NmeAIII	GCCGAG	1 cut(s)	1162
NmuCI	GTSAC	1 cut(s)	402
NspI	RCATGY	2 cut(s)	62, 136
PaeR7I	CTCGAG	1 cut(s)	656
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	4 cut(s)	291, 378, 471, 645
PfeI	GAWTC	5 cut(s)	696, 704, 758, 928, 938
PkrI	GCNGC	4 cut(s)	6, 138, 306, 1261
PleI	GAGTC	6 cut(s)	173, 346, 820, 903, 1109, 1294
PpsI	GAGTC	6 cut(s)	173, 346, 820, 903, 1109, 1294
Ppu21I	YACGTR	1 cut(s)	998
Psp124BI	GAGCTC	3 cut(s)	222, 396, 489
Psp6I	CCWGG	1 cut(s)	1262
PspGI	CCWGG	1 cut(s)	1262
PspPI	GGNCC	1 cut(s)	903
PstI	CTGCAG	1 cut(s)	1125
PstNI	CAGNNNCTG	1 cut(s)	313
SacI	GAGCTC	3 cut(s)	222, 396, 489
SaqAI	TTAA	1 cut(s)	1206
SatI	GCNGC	4 cut(s)	5, 137, 305, 1260
Sau3AI	GATC	5 cut(s)	34, 79, 573, 711, 829
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	6 cut(s)	173, 347, 821, 904, 1109, 1295
ScrFI	CCNGG	1 cut(s)	1264
SduI	GDGCHC	6 cut(s)	88, 222, 396, 489, 1003, 1149
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	1121
Sfr274I	CTCGAG	1 cut(s)	656
SinI	GGWCC	1 cut(s)	903
SlaI	CTCGAG	1 cut(s)	656
SmlI	CTYRAG	3 cut(s)	656, 986, 1150
SmoI	CTYRAG	3 cut(s)	656, 986, 1150
SsiI	CCGC	1 cut(s)	136
SstI	GAGCTC	3 cut(s)	222, 396, 489
StyD4I	CCNGG	1 cut(s)	1262
StyI	CCWWGG	1 cut(s)	1131
TaaI	ACNGT	2 cut(s)	402, 1167
TaiI	ACGT	1 cut(s)	1000
TaqI	TCGA	2 cut(s)	82, 657
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	5 cut(s)	696, 704, 758, 928, 938
Tru1I	TTAA	1 cut(s)	1206
Tru9I	TTAA	1 cut(s)	1206
TscAI	CASTG	5 cut(s)	504, 832, 1125, 1172, 1261
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	3 cut(s)	4, 304, 1259
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	6 cut(s)	59, 108, 122, 362, 438, 1236
TspGWI	ACGGA	5 cut(s)	521, 805, 1059, 1109, 1315
TspRI	CASTG	5 cut(s)	504, 832, 1125, 1172, 1261
VneI	GTGCAC	1 cut(s)	999
VpaK11BI	GGWCC	1 cut(s)	903
XapI	RAATTY	5 cut(s)	291, 378, 471, 645, 763
XceI	RCATGY	2 cut(s)	62, 136
XhoI	CTCGAG	1 cut(s)	656
XmnI	GAANNNNTTC	4 cut(s)	291, 378, 471, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.