Rmu_co8429047.1_g000001

WEB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8429047.1
OG0012986
Physical Location & Seq
Forward (+)
11 .. 1138
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8429047.1_g000001.1.cds

Sequence Viewer

Length: 1128 bp
atgctaaagaccaatgaggaagattttaaattgatgttggatgaagtaaggaaagaagctgagaggcacaaaaacactgctgccaggttgaaaatagaacacgaagagtcggttatggcatggagtgggaaggaaactggctttgttgactgtattagaagagcagaagacgacagacatgctgcacagcaagagaactataggttgcatgagttgcttctcgagacggataacaaggccatgttgtcaaaggaagaaaatagtaaattgcgcgatatacttaaacaggccttgaatgaagcaaatatttccaaagaagctgcagtcattgctcgagctgaaaattctcagctcaaagatagcctggaagaaaaggaggaggccttgaattttctcacccgagaaaatgaaaattatagggtgaatgaaattgctgctaatgaaaacattaaggagttgaagcggttgcttattgaatcgtcaaagaaggactgcaagaaagaggaaaaagagaaaccgccattgaaggatgtgaaaaaggagtcgaaggataaaacacctacaaaggagtcgaagaaggaggctaaggagtcaaagcctacaaaggaggatagtgataaggagaaagaggctggaaacatacttggcaaagttttcagcttcagtctcaaggagcttagaatctcaaactcacacgatgatgttgttcatgttgttcaagatgatgatgatgatgatgatgagattgaaatagacgaggctctcaaaggctcgatctttgaggtacagtctcccggctccgctaatcatcaccggagaacttcttctgcattcacagattatggagaacccctccatccagaggattttgatcatctagaccatcatctagatgggactcacgccgagaactcgagaaagaagaaagccttgctaagaagatttggcgatcttataaagagaagtactgcttattcctactctaaaaaggagccatcaccggatcccaaaaaggaactattgcaggacgcaaagaaggagccttcacaggatctcaaaaaggaaccttcactggatagcaagaaggaaccctcacaagatatcaagaaggaagcattaccagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

375

Amino Acids

43.13

Weight (kDa)

5.52

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40020
fragaria_vesca FvH4_1g20290
malus_domestica MD03G1184100.v1.1 MD11G1200900.v1.1
prunus_persica Prupe.6G192500_v2.0.a1
pyrus_communis pycom03g13740
rosa_chinensis RchiOBHm_Chr2g0112431
rosa_laevigata RLG00000017980
rosa_multiflora Rmu_co8429047.1_g000001 Rmu_sc0004467.1_g000073 Rmu_sc0004467.1_g000074
rosa_roxburghii Rroxscaffold_2G00131450
rosa_rugosa Rorug02G0180500
rosa_samantha Rh2AG233900 Rh2BG247200 Rh2CG238400 Rh2DG241500
rosa_wichuraiana Rw2G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 463, 518, 801
AclWI GGATC 3 cut(s) 998, 1011, 1059
AcsI RAATTY 2 cut(s) 343, 388
AcuI CTGAAG 1 cut(s) 646
AfaI GTAC 2 cut(s) 786, 967
AfiI CCNNNNNNNGG 1 cut(s) 862
AgsI TTSAA 8 cut(s) 91, 295, 388, 460, 476, 526, 719, 749
AjnI CCWGG 2 cut(s) 83, 363
AluBI AGCT 6 cut(s) 59, 320, 338, 352, 660, 676
AluI AGCT 6 cut(s) 59, 320, 338, 352, 660, 676
Alw26I GTCTC 3 cut(s) 218, 671, 795
AlwI GGATC 3 cut(s) 998, 1011, 1059
Ama87I CYCGRG 4 cut(s) 221, 333, 399, 913
AoxI GGCC 3 cut(s) 237, 288, 381
ApeKI GCWGC 4 cut(s) 80, 182, 320, 434
ApoI RAATTY 2 cut(s) 343, 388
Asp700I GAANNNNTTC 1 cut(s) 823
AspLEI GCGC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 795
AsuHPI GGTGA 4 cut(s) 388, 433, 803, 990
AvaI CYCGRG 4 cut(s) 221, 333, 399, 913
BamHI GGATCC 1 cut(s) 1003
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 67, 169, 307, 421
BccI CCATC 4 cut(s) 864, 887, 891, 1003
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 85, 365
BclI TGATCA 1 cut(s) 871
BcnI CCSGG 1 cut(s) 795
BcoDI GTCTC 3 cut(s) 218, 671, 795
BfaI CTAG 2 cut(s) 878, 890
BfmI CTRYAG 2 cut(s) 199, 321
BisI GCNGC 4 cut(s) 81, 183, 321, 435
BlsI GCNGC 4 cut(s) 82, 184, 322, 436
BmcAI AGTACT 1 cut(s) 967
Bme1390I CCNGG 3 cut(s) 85, 365, 795
BmeT110I CYCGRG 4 cut(s) 221, 333, 399, 913
BmiI GGNNCC 6 cut(s) 799, 993, 1005, 1041, 1065, 1089
BmrFI CCNGG 3 cut(s) 85, 365, 795
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 837, 869
Bpu10I CCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 870
BsaWI WCCGGW 2 cut(s) 813, 1000
Bsc4I CCNNNNNNNGG 1 cut(s) 862
Bse1I ACTGG 2 cut(s) 142, 1077
Bse3DI GCAATG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 2 cut(s) 85, 365
BseGI GGATG 3 cut(s) 46, 535, 856
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 1 cut(s) 862
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 51, 362
BseNI ACTGG 2 cut(s) 142, 1077
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 4 cut(s) 67, 169, 307, 421
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 3 cut(s) 239, 290, 383
BsiHKCI CYCGRG 4 cut(s) 221, 333, 399, 913
BsiSI CCGG 3 cut(s) 795, 814, 1001
BslFI GGGAC 1 cut(s) 910
BslI CCNNNNNNNGG 1 cut(s) 862
BsmAI GTCTC 3 cut(s) 218, 671, 795
BsmBI CGTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 910
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 3 cut(s) 239, 290, 383
BsoBI CYCGRG 4 cut(s) 221, 333, 399, 913
Bsp143I GATC 5 cut(s) 774, 871, 949, 1003, 1051
BspACI CCGC 3 cut(s) 463, 518, 801
BspANI GGCC 3 cut(s) 239, 290, 383
BspCNI CTCAG 2 cut(s) 52, 361
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 6 cut(s) 799, 993, 1005, 1041, 1065, 1089
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 3 cut(s) 998, 1011, 1059
BspQI GCTCTTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 2 cut(s) 142, 1077
BssMI GATC 5 cut(s) 774, 871, 949, 1003, 1051
Bst2UI CCWGG 2 cut(s) 85, 365
Bst4CI ACNGT 2 cut(s) 152, 789
Bst6I CTCTTC 2 cut(s) 99, 154
BstAPI GCANNNNNTGC 2 cut(s) 214, 329
BstDEI CTNAG 5 cut(s) 60, 348, 585, 677, 935
BstF5I GGATG 3 cut(s) 46, 535, 856
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 5 cut(s) 777, 874, 952, 1006, 1054
BstMAI GTCTC 3 cut(s) 218, 671, 795
BstMBI GATC 5 cut(s) 774, 871, 949, 1003, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 214, 329
BstNI CCWGG 2 cut(s) 85, 365
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 83, 363, 793
BstSFI CTRYAG 2 cut(s) 199, 321
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 4 cut(s) 67, 169, 307, 421
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 2 cut(s) 1003, 1051
BstYI RGATCY 2 cut(s) 1003, 1051
BsuRI GGCC 3 cut(s) 239, 290, 383
BtsCI GGATG 3 cut(s) 46, 535, 856
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 1070
CfoI GCGC 1 cut(s) 273
CseI GACGC 1 cut(s) 1037
Csp6I GTAC 2 cut(s) 785, 966
CviAII CATG 5 cut(s) 120, 179, 209, 241, 710
CviQI GTAC 2 cut(s) 785, 966
DdeI CTNAG 5 cut(s) 60, 348, 585, 677, 935
DpnI GATC 5 cut(s) 776, 873, 951, 1005, 1053
DpnII GATC 5 cut(s) 774, 871, 949, 1003, 1051
DraI TTTAAA 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 99, 154
EarI CTCTTC 2 cut(s) 99, 154
Eco147I AGGCCT 2 cut(s) 290, 383
Eco32I GATATC 1 cut(s) 1102
Eco57I CTGAAG 1 cut(s) 646
Eco88I CYCGRG 4 cut(s) 221, 333, 399, 913
EcoRII CCWGG 2 cut(s) 83, 363
EcoRV GATATC 1 cut(s) 1102
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 5 cut(s) 123, 182, 212, 244, 713
FalI AAGNNNNNCTT 4 cut(s) 914, 946, 955, 987
FaqI GGGAC 1 cut(s) 910
FatI CATG 5 cut(s) 119, 178, 208, 240, 709
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 4 cut(s) 81, 183, 321, 435
FokI GGATG 3 cut(s) 53, 542, 843
Fsp4HI GCNGC 4 cut(s) 81, 183, 321, 435
FspBI CTAG 2 cut(s) 878, 890
GlaI GCGC 1 cut(s) 272
GluI GCNGC 4 cut(s) 81, 183, 321, 435
HaeIII GGCC 3 cut(s) 239, 290, 383
HapII CCGG 3 cut(s) 795, 814, 1001
HgaI GACGC 1 cut(s) 1037
HhaI GCGC 1 cut(s) 273
Hin1II CATG 5 cut(s) 123, 182, 212, 244, 713
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 7 cut(s) 107, 476, 542, 569, 590, 681, 898
HpaII CCGG 3 cut(s) 795, 814, 1001
HphI GGTGA 4 cut(s) 388, 433, 803, 990
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 8 cut(s) 221, 223, 719, 860, 878, 890, 915, 1105
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 152, 789
HpyCH4V TGCA 6 cut(s) 185, 208, 323, 495, 830, 1024
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 329
HpyF3I CTNAG 5 cut(s) 60, 348, 585, 677, 935
Hsp92II CATG 5 cut(s) 123, 182, 212, 244, 713
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 5 cut(s) 774, 871, 949, 1003, 1051
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 4 cut(s) 673, 803, 991, 1039
Lsp1109I GCAGC 4 cut(s) 67, 169, 307, 421
MaeI CTAG 2 cut(s) 878, 890
MalI GATC 5 cut(s) 776, 873, 951, 1005, 1053
MboI GATC 5 cut(s) 774, 871, 949, 1003, 1051
MflI RGATCY 2 cut(s) 1003, 1051
MluCI AATT 6 cut(s) 29, 266, 343, 388, 412, 429
MlyI GAGTC 5 cut(s) 116, 551, 578, 599, 892
MmeI TCCRAC 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 823
MseI TTAA 3 cut(s) 27, 282, 450
MslI CAYNNNNRTG 2 cut(s) 699, 891
MspI CCGG 3 cut(s) 795, 814, 1001
MspR9I CCNGG 3 cut(s) 85, 365, 795
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 2 cut(s) 85, 365
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 214, 329
NciI CCSGG 1 cut(s) 795
NdeII GATC 5 cut(s) 774, 871, 949, 1003, 1051
NlaIII CATG 5 cut(s) 123, 182, 212, 244, 713
NlaIV GGNNCC 6 cut(s) 799, 993, 1005, 1041, 1065, 1089
NmeAIII GCCGAG 1 cut(s) 931
NspI RCATGY 1 cut(s) 182
PaeR7I CTCGAG 3 cut(s) 221, 333, 913
PceI AGGCCT 2 cut(s) 290, 383
PciSI GCTCTTC 1 cut(s) 154
PctI GAATGC 1 cut(s) 830
PdmI GAANNNNTTC 1 cut(s) 823
PfeI GAWTC 2 cut(s) 476, 681
PkrI GCNGC 4 cut(s) 82, 184, 322, 436
PleI GAGTC 5 cut(s) 115, 550, 577, 598, 892
PpsI GAGTC 5 cut(s) 115, 550, 577, 598, 892
PsiI TTATAA 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 83, 363
PspGI CCWGG 2 cut(s) 83, 363
PspN4I GGNNCC 6 cut(s) 799, 993, 1005, 1041, 1065, 1089
PspXI VCTCGAGB 1 cut(s) 333
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 2 cut(s) 1003, 1051
RsaI GTAC 2 cut(s) 786, 967
RsaNI GTAC 2 cut(s) 785, 966
RseI CAYNNNNRTG 2 cut(s) 699, 891
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 3 cut(s) 27, 282, 450
SatI GCNGC 4 cut(s) 81, 183, 321, 435
Sau3AI GATC 5 cut(s) 774, 871, 949, 1003, 1051
ScaI AGTACT 1 cut(s) 967
SchI GAGTC 5 cut(s) 116, 551, 578, 599, 892
ScrFI CCNGG 3 cut(s) 85, 365, 795
SfcI CTRYAG 2 cut(s) 199, 321
Sfr274I CTCGAG 3 cut(s) 221, 333, 913
SlaI CTCGAG 3 cut(s) 221, 333, 913
SmiMI CAYNNNNRTG 2 cut(s) 699, 891
SmlI CTYRAG 4 cut(s) 221, 333, 668, 913
SmoI CTYRAG 4 cut(s) 221, 333, 668, 913
Sse9I AATT 6 cut(s) 29, 266, 343, 388, 412, 429
SseBI AGGCCT 2 cut(s) 290, 383
SsiI CCGC 3 cut(s) 463, 518, 801
SspI AATATT 1 cut(s) 307
SspMI CTAG 2 cut(s) 878, 890
StuI AGGCCT 2 cut(s) 290, 383
StyD4I CCNGG 3 cut(s) 83, 363, 793
TaaI ACNGT 2 cut(s) 152, 789
TaqI TCGA 6 cut(s) 222, 334, 545, 572, 773, 914
TasI AATT 6 cut(s) 29, 266, 343, 388, 412, 429
TatI WGTACW 1 cut(s) 965
TfiI GAWTC 2 cut(s) 476, 681
Tru1I TTAA 3 cut(s) 27, 282, 450
Tru9I TTAA 3 cut(s) 27, 282, 450
TscAI CASTG 2 cut(s) 82, 1077
TseI GCWGC 4 cut(s) 80, 182, 320, 434
TspDTI ATGAA 6 cut(s) 57, 312, 423, 441, 456, 698
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 82, 1077
XapI RAATTY 2 cut(s) 343, 388
XbaI TCTAGA 2 cut(s) 877, 889
XceI RCATGY 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 890
XhoI CTCGAG 3 cut(s) 221, 333, 913
XmnI GAANNNNTTC 1 cut(s) 823
XspI CTAG 2 cut(s) 878, 890
ZrmI AGTACT 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.