MD11G1223600.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017643
Physical Location & Seq
Reverse (-)
32755386 .. 32756744
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1223600.v1.1.491

Sequence Viewer

Length: 1359 bp
ATGGCTGGAGTCCAAGCTTTTGTTTCAACAATTCTCTTTCTTTCACTCATCACATTCTCCACATTCCATCCAACGCATTCAAAACCTAATGGTTTCAGCCTCCGGTTGATCCCTAGAGACTCACCGGAATCGCCTCTATACCCCGGAAACCTCACAGTACATGAACGTATCGAAAGATTGGTCAGGTTCTCGAAAGCCAGGGCGCGCTACGTGGAATTAACTTCCGGTTCAAATTCCACCGCAGACCTCAACCAAATAGAACTTACTTTGCTTCGTGACAACTTCTTCTATATCGTGCAGATTGCGCTTGGAACCCCAAAAGTCCCCCAGCTCCTGCTTCTCGACACTGGTGGTGGCCTAATTTGGACTCAGTGCCAGCCTTGTGTTGCATGTTACCCACAACAAGGTAATCCCATTTTCGATTCAACAACATCGAGCACATACCGAAAGCTTCCGTGCGACCACCCTCTGTGTTCAGGTGCCAATCCCCTTTACCAATGTGCTAACAATGAATGCGTCTACAATATTGGTTATGGTGGTGGCGCAACAACTCGAGGTGTTGCTTCCTTTGAAACATTCACATTTCCGACTGATACAGCCGAAAACGTGATCTTCGGTTGTTCGAAGGAAAACAGAAACATTCAGTTCTCAAAGAGTGGTTACATTTCGGGGGTAATGGGGTTGAGCTTGAGTCCGGATTCACTAGTGACCCAACTCGCTGATAAAACCAAAAAAACTTTCTCATACTGTTTGCTCCCTTTTACTGATGCACTAATAAACCCTGGTTTCGTTAAGTTTGGGGATGAAATACCATTACCAGCTGGAAATGTTTACACAAGTCCGTTTGTAACACCACCTGGACAACATTACTACTACCTAAATCTTTTGGATATAAGTGTTGGGTTGAAACGCCTAGGGTTTCCACCGGGTACCTTTACAATTGGGCAAGGTGGCACCGGTGGTTTCTTCATCGATTCTGGTGCCCTAATCCCTCAACTCAATACAGATGCCAGCGGACGCAATGCCTACAGGGAGGTGATGAGGGCATTTCAACAATGGTATGACGGTTTAAAACTTACAAGGATCGGTAAAGTGCCTGAAGGGCTGGCATTGTGCTACAAATATACGCCGGATTTCAATCAATTCGCCACATTAACGTACCATTTGCAAGATGCTAATTACGTCGTTGATGGGAAATATGCTCATGTCTTTAACAAAGATGCGGGGTACTTTTGCGTAGCAATGATGCCTGGAAATGGGAAGTCTATGCTTGGAGCATGGCATCAGCAGAATATGAGGGTCACCTACAATGGCAACATCAATTCACTTCAATTTTCGGTCGAGACTTGTCCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

453

Amino Acids

49.74

Weight (kDa)

7.9

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 97 - 268 8.4e-43 Xylanase inhibitor N-terminal
TAXi_C PF14541 291 - 446 8.9e-18 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07191
malus_domestica MD11G1223600.v1.1
prunus_persica Prupe.4G207600_v2.0.a1 Prupe.4G207700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399441
rosa_laevigata RLG00000009268
rosa_roxburghii Rroxscaffold_5G00344340
rosa_rugosa Rorug04G0016900
rosa_samantha Rh4BG092000 Rh4CG102900 Rh4DG086900
rosa_wichuraiana Rw4G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 929
AccB1I GGYRCC 4 cut(s) 479, 929, 953, 980
AccI GTMKAC 1 cut(s) 519
AccII CGCG 1 cut(s) 205
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 3 cut(s) 240, 1014, 1223
AclWI GGATC 2 cut(s) 103, 1091
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 1119
AfaI GTAC 4 cut(s) 159, 931, 1160, 1229
AfiI CCNNNNNNNGG 2 cut(s) 404, 1256
AgeI ACCGGT 1 cut(s) 956
AgsI TTSAA 9 cut(s) 27, 81, 231, 426, 572, 907, 1052, 1138, 1331
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 4 cut(s) 197, 781, 856, 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 5 cut(s) 17, 331, 451, 687, 821
AluI AGCT 5 cut(s) 17, 331, 451, 687, 821
Alw21I GWGCWC 1 cut(s) 440
Alw26I GTCTC 2 cut(s) 111, 1337
AlwI GGATC 2 cut(s) 103, 1091
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 552
Aor13HI TCCGGA 1 cut(s) 694
AoxI GGCC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 232
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AsiGI ACCGGT 1 cut(s) 956
Asp718I GGTACC 1 cut(s) 929
AspA2I CCTAGG 1 cut(s) 913
AspLEI GCGC 4 cut(s) 205, 207, 307, 545
AsuC2I CCSGG 2 cut(s) 144, 927
AsuHPI GGTGA 3 cut(s) 114, 1048, 1294
AsuII TTCGAA 1 cut(s) 623
AvaI CYCGRG 1 cut(s) 552
AvrII CCTAGG 1 cut(s) 913
BaeGI GKGCMC 1 cut(s) 985
BanI GGYRCC 4 cut(s) 479, 929, 953, 980
Bbv12I GWGCWC 1 cut(s) 440
BccI CCATC 2 cut(s) 75, 1184
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 4 cut(s) 199, 783, 858, 1251
BcnI CCSGG 2 cut(s) 144, 927
BcoDI GTCTC 2 cut(s) 111, 1337
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 4 cut(s) 114, 704, 914, 1353
BfmI CTRYAG 1 cut(s) 1027
BglI GCCNNNNNGGC 1 cut(s) 1102
BlnI CCTAGG 1 cut(s) 913
Bme1390I CCNGG 6 cut(s) 144, 199, 783, 858, 927, 1251
BmeT110I CYCGRG 1 cut(s) 552
BmiI GGNNCC 5 cut(s) 313, 481, 931, 955, 982
BmrFI CCNGG 6 cut(s) 144, 199, 783, 858, 927, 1251
BmsI GCATC 6 cut(s) 757, 997, 1162, 1210, 1236, 1291
BpmI CTGGAG 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 709
BpuMI CCSGG 2 cut(s) 144, 927
Bsa29I ATCGAT 1 cut(s) 972
BsaAI YACGTR 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 1137
BsaJI CCNNGG 4 cut(s) 142, 198, 781, 913
BsaWI WCCGGW 5 cut(s) 102, 124, 224, 694, 956
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 1256
Bse118I RCCGGY 1 cut(s) 956
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 2 cut(s) 1027, 1248
Bse8I GATNNNNATC 1 cut(s) 1137
BseAI TCCGGA 1 cut(s) 694
BseBI CCWGG 4 cut(s) 199, 783, 858, 1251
BseCI ATCGAT 1 cut(s) 972
BseDI CCNNGG 4 cut(s) 142, 198, 781, 913
BseGI GGATG 2 cut(s) 67, 808
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 2 cut(s) 404, 1256
BseMI GCAATG 2 cut(s) 1027, 1248
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 352
BsePI GCGCGC 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 985
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 1341
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 4 cut(s) 479, 929, 953, 980
BshTI ACCGGT 1 cut(s) 956
BshVI ATCGAT 1 cut(s) 972
BsiEI CGRYCG 1 cut(s) 1341
BsiHKAI GWGCWC 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 552
BsiSI CCGG 8 cut(s) 103, 125, 144, 225, 695, 926, 957, 1130
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 404, 1256
BsmAI GTCTC 2 cut(s) 111, 1337
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 2 cut(s) 76, 518
BsnI GGCC 1 cut(s) 357
BsoBI CYCGRG 1 cut(s) 552
Bsp119I TTCGAA 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 440, 985
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 3 cut(s) 108, 609, 1083
BspACI CCGC 3 cut(s) 240, 1014, 1223
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 382
BspDI ATCGAT 1 cut(s) 972
BspEI TCCGGA 1 cut(s) 694
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 5 cut(s) 313, 481, 931, 955, 982
BspPI GGATC 2 cut(s) 103, 1091
BspT104I TTCGAA 1 cut(s) 623
BspT107I GGYRCC 4 cut(s) 479, 929, 953, 980
BsrDI GCAATG 2 cut(s) 1027, 1248
BsrFI RCCGGY 1 cut(s) 956
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 956
BssECI CCNNGG 4 cut(s) 142, 198, 781, 913
BssHII GCGCGC 1 cut(s) 203
BssMI GATC 3 cut(s) 108, 609, 1083
BssT1I CCWWGG 1 cut(s) 913
Bst2UI CCWGG 4 cut(s) 199, 783, 858, 1251
Bst4CI ACNGT 3 cut(s) 157, 749, 1067
BstBAI YACGTR 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 4 cut(s) 205, 377, 1012, 1107
BstDEI CTNAG 1 cut(s) 369
BstEII GGTNACC 1 cut(s) 1300
BstF5I GGATG 2 cut(s) 67, 808
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 4 cut(s) 205, 207, 307, 545
BstKTI GATC 3 cut(s) 111, 612, 1086
BstMAI GTCTC 2 cut(s) 111, 1337
BstMBI GATC 3 cut(s) 108, 609, 1083
BstMCI CGRYCG 1 cut(s) 1341
BstMWI GCNNNNNNNGC 2 cut(s) 304, 1102
BstNI CCWGG 4 cut(s) 199, 783, 858, 1251
BstNSI RCATGY 1 cut(s) 393
BstPI GGTNACC 1 cut(s) 1300
BstSCI CCNGG 6 cut(s) 142, 197, 781, 856, 925, 1249
BstSFI CTRYAG 1 cut(s) 1027
BstSLI GKGCMC 1 cut(s) 985
BstUI CGCG 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 972
BsuRI GGCC 1 cut(s) 357
BsuTUI ATCGAT 1 cut(s) 972
BtsCI GGATG 2 cut(s) 67, 808
BtsIMutI CAGTG 2 cut(s) 345, 377
Cac8I GCNNGC 4 cut(s) 205, 377, 1012, 1107
CaiI CAGNNNCTG 1 cut(s) 334
CfoI GCGC 4 cut(s) 205, 207, 307, 545
Cfr10I RCCGGY 1 cut(s) 956
ClaI ATCGAT 1 cut(s) 972
CseI GACGC 2 cut(s) 505, 1026
Csp6I GTAC 4 cut(s) 158, 930, 1159, 1228
CspAI ACCGGT 1 cut(s) 956
CviAII CATG 4 cut(s) 161, 390, 1205, 1278
CviQI GTAC 4 cut(s) 158, 930, 1159, 1228
DdeI CTNAG 1 cut(s) 369
DpnI GATC 3 cut(s) 110, 611, 1085
DpnII GATC 3 cut(s) 108, 609, 1083
DraI TTTAAA 1 cut(s) 1071
Eco130I CCWWGG 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 1119
Eco88I CYCGRG 1 cut(s) 552
Eco91I GGTNACC 1 cut(s) 1300
EcoO65I GGTNACC 1 cut(s) 1300
EcoRII CCWGG 4 cut(s) 197, 781, 856, 1249
EcoT14I CCWWGG 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 913
FaeI CATG 4 cut(s) 164, 393, 1208, 1281
FaqI GGGAC 1 cut(s) 308
FatI CATG 4 cut(s) 160, 389, 1204, 1277
FauI CCCGC 1 cut(s) 1216
FblI GTMKAC 1 cut(s) 519
FokI GGATG 2 cut(s) 54, 815
FspBI CTAG 4 cut(s) 114, 704, 914, 1353
GlaI GCGC 4 cut(s) 204, 206, 306, 544
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 357
HapII CCGG 8 cut(s) 103, 125, 144, 225, 695, 926, 957, 1130
HgaI GACGC 2 cut(s) 505, 1026
HhaI GCGC 4 cut(s) 205, 207, 307, 545
Hin1II CATG 4 cut(s) 164, 393, 1208, 1281
Hin6I GCGC 4 cut(s) 203, 205, 305, 543
HinP1I GCGC 4 cut(s) 203, 205, 305, 543
HindIII AAGCTT 2 cut(s) 15, 449
HinfI GANTC 8 cut(s) 9, 119, 128, 367, 422, 691, 698, 974
HpaII CCGG 8 cut(s) 103, 125, 144, 225, 695, 926, 957, 1130
HphI GGTGA 3 cut(s) 114, 1048, 1294
Hpy166II GTNNAC 2 cut(s) 520, 832
Hpy188I TCNGA 1 cut(s) 588
Hpy188III TCNNGA 5 cut(s) 190, 275, 341, 695, 1342
Hpy8I GTNNAC 2 cut(s) 520, 832
Hpy99I CGWCG 1 cut(s) 1187
HpyAV CCTTC 2 cut(s) 619, 1094
HpyCH4III ACNGT 3 cut(s) 157, 749, 1067
HpyCH4IV ACGT 5 cut(s) 166, 210, 606, 1157, 1182
HpyCH4V TGCA 4 cut(s) 298, 389, 770, 1168
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 1102
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 5 cut(s) 166, 210, 606, 1157, 1182
Hsp92II CATG 4 cut(s) 164, 393, 1208, 1281
HspAI GCGC 4 cut(s) 203, 205, 305, 543
Kpn2I TCCGGA 1 cut(s) 694
KpnI GGTACC 1 cut(s) 933
Kzo9I GATC 3 cut(s) 108, 609, 1083
LmnI GCTCC 3 cut(s) 336, 759, 1274
LweI GCATC 6 cut(s) 757, 997, 1162, 1210, 1236, 1291
MaeI CTAG 4 cut(s) 114, 704, 914, 1353
MaeII ACGT 5 cut(s) 166, 210, 606, 1157, 1182
MaeIII GTNAC 6 cut(s) 275, 392, 659, 706, 847, 1300
MalI GATC 3 cut(s) 110, 611, 1085
MboI GATC 3 cut(s) 108, 609, 1083
MboII GAAGA 3 cut(s) 277, 604, 958
MfeI CAATTG 1 cut(s) 939
MhlI GDGCHC 2 cut(s) 440, 985
MluCI AATT 9 cut(s) 30, 215, 232, 360, 939, 1142, 1177, 1321, 1331
MlyI GAGTC 4 cut(s) 18, 113, 361, 700
MmeI TCCRAC 2 cut(s) 95, 611
MroI TCCGGA 1 cut(s) 694
MseI TTAA 6 cut(s) 218, 792, 1070, 1154, 1212, 1357
MspA1I CMGCKG 2 cut(s) 821, 1014
MspI CCGG 8 cut(s) 103, 125, 144, 225, 695, 926, 957, 1130
MspR9I CCNGG 6 cut(s) 144, 199, 783, 858, 927, 1251
MunI CAATTG 1 cut(s) 939
Mva1269I GAATGC 2 cut(s) 76, 518
MvaI CCWGG 4 cut(s) 199, 783, 858, 1251
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 304, 1102
NciI CCSGG 2 cut(s) 144, 927
NdeII GATC 3 cut(s) 108, 609, 1083
NlaIII CATG 4 cut(s) 164, 393, 1208, 1281
NlaIV GGNNCC 5 cut(s) 313, 481, 931, 955, 982
NmuCI GTSAC 3 cut(s) 275, 706, 1300
NspI RCATGY 1 cut(s) 393
NspV TTCGAA 1 cut(s) 623
PaeR7I CTCGAG 1 cut(s) 552
PauI GCGCGC 1 cut(s) 203
PctI GAATGC 2 cut(s) 76, 518
PfeI GAWTC 4 cut(s) 128, 422, 698, 974
PinAI ACCGGT 1 cut(s) 956
PleI GAGTC 4 cut(s) 17, 113, 361, 699
PpsI GAGTC 4 cut(s) 17, 113, 361, 699
Ppu21I YACGTR 1 cut(s) 211
Psp6I CCWGG 4 cut(s) 197, 781, 856, 1249
PspEI GGTNACC 1 cut(s) 1300
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 4 cut(s) 197, 781, 856, 1249
PspN4I GGNNCC 5 cut(s) 313, 481, 931, 955, 982
PspXI VCTCGAGB 1 cut(s) 552
PstNI CAGNNNCTG 1 cut(s) 334
PteI GCGCGC 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 4 cut(s) 159, 931, 1160, 1229
RsaNI GTAC 4 cut(s) 158, 930, 1159, 1228
SaqAI TTAA 6 cut(s) 218, 792, 1070, 1154, 1212, 1357
Sau3AI GATC 3 cut(s) 108, 609, 1083
SchI GAGTC 4 cut(s) 18, 113, 361, 700
ScrFI CCNGG 6 cut(s) 144, 199, 783, 858, 927, 1251
SduI GDGCHC 2 cut(s) 440, 985
SfaNI GCATC 6 cut(s) 757, 997, 1162, 1210, 1236, 1291
SfcI CTRYAG 1 cut(s) 1027
Sfr274I CTCGAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 623
SgrAI CRCCGGYG 1 cut(s) 956
SlaI CTCGAG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 552, 688
SmoI CTYRAG 2 cut(s) 552, 688
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 9 cut(s) 30, 215, 232, 360, 939, 1142, 1177, 1321, 1331
SsiI CCGC 3 cut(s) 240, 1014, 1223
SspI AATATT 1 cut(s) 526
SspMI CTAG 4 cut(s) 114, 704, 914, 1353
StyD4I CCNGG 6 cut(s) 142, 197, 781, 856, 925, 1249
StyI CCWWGG 1 cut(s) 913
TaaI ACNGT 3 cut(s) 157, 749, 1067
TaiI ACGT 5 cut(s) 169, 213, 609, 1160, 1185
TaqI TCGA 9 cut(s) 171, 191, 342, 420, 434, 553, 623, 972, 1341
TaqII GACCGA 1 cut(s) 1327
TasI AATT 9 cut(s) 30, 215, 232, 360, 939, 1142, 1177, 1321, 1331
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 4 cut(s) 128, 422, 698, 974
Tru1I TTAA 6 cut(s) 218, 792, 1070, 1154, 1212, 1357
Tru9I TTAA 6 cut(s) 218, 792, 1070, 1154, 1212, 1357
TscAI CASTG 2 cut(s) 352, 377
TseFI GTSAC 3 cut(s) 275, 706, 1300
Tsp45I GTSAC 3 cut(s) 275, 706, 1300
TspDTI ATGAA 4 cut(s) 177, 525, 819, 958
TspGWI ACGGA 2 cut(s) 444, 831
TspRI CASTG 2 cut(s) 352, 377
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 393
XhoI CTCGAG 1 cut(s) 552
XmaJI CCTAGG 1 cut(s) 913
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 4 cut(s) 114, 704, 914, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.