Prupe.4G207700_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017643
Physical Location & Seq
Reverse (-)
12927175 .. 12928444
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G207700.1

Sequence Viewer

Length: 1200 bp
ATGATCAAGTTCACCGAAGCTAGGGCTCACATTTTGGACTTGATTTCATCTTCAAATTATTCCACCATAGAACCTAACAATCTTAGTTTGATTCGTGACAGCTTCTTTTATATGGTGCAGGTTGGCATTGGGACCCCGGTTGAGTTCCAGTTCCTACTTATGGACACTGGCGGCGGCCTAATTTGGACCCAGTGCCAACCTTGTATTAATTGTTACCGACAAACTAAAACTCACATTTTTGTTCCAAGCCAATCGAGCACTTATCGAAGGCTTCCTTGCGACCACCCTCTTTGCCATGGTGATCTTCCTTTGTACCAATGTGTTAACGATGAATGTGTCTACAACATTGGCTATGGTGGTGGGTCATCAACTCGAGGTGTTGTTTCTTATGAAACGTTCACATTCCCATTGGACGCCACTAGAACTATCGATAACATGATCTTCGGTTGTTCAAATGATAATCGGAACATTCAATTCTCGATACATGGTGTGATTTCGGGGATAATGGGGTTGAGTTTGAGCCCTGATTCACTGGTGTCCCAATTGGCTGATCAAACCCAGAGACGTTTCTCTTATTGCTTGGTCCCTTTTACTGAAGCACAAATGCAACCTAGTGTGCTAAGGTTTGGGGATACCATACCCTTACCATCTTCAAATGTTTACACAACTCCATTTGTCACACCAGGAGGATCAAATTATTACCACTTAAATCTGTTGGACATAAGTGTTGGAATGCGCCCGTTAATGTTTCCACCGGGCACCTTTACGGCTAGGATAGGTTTTTCCGGTGGTTTCTTCATCGACTCCGGTGCCCTAATCTCCCAACTTGATCAAAATCTCGTTAATGAACGCAACGTGTACCGGGAGGTGATGAGGGCATTTCAGAATCATTATGATTCTTTCCATCTTCAAAGGCTGGGTAGAGTGCCTGAAGGGTTCCCATTATGTTACAAATATCCTCCGGAATTTAATCAATTTGCCTCCTTGACGTACCAGTTGGAAGGTGGTAATTATGTTGTTGATCCAAAGTATGTGAATTTCTATAATACTCAGGCAGGTTATTTTTGCGTAGCAATGATGCCAGGAACTGGGAAATCTATACTAGGAGCATGGCATCAGCAAAATATGAGGGTCACCTACAATGGCGCCATCAACTCACTCCAATTTTCTACCGAAACTTGTGCTAATGACCATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

400

Amino Acids

44.79

Weight (kDa)

5.91

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07191
malus_domestica MD11G1223600.v1.1
prunus_persica Prupe.4G207600_v2.0.a1 Prupe.4G207700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399441
rosa_laevigata RLG00000009268
rosa_roxburghii Rroxscaffold_5G00344340
rosa_rugosa Rorug04G0016900
rosa_samantha Rh4BG092000 Rh4CG102900 Rh4DG086900
rosa_wichuraiana Rw4G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 109, 1046
AccB1I GGYRCC 3 cut(s) 758, 809, 1145
AccB7I CCANNNNNTGG 1 cut(s) 1088
AccI GTMKAC 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 961
AciI CCGC 2 cut(s) 171, 174
AclI AACGTT 1 cut(s) 395
AclWI GGATC 2 cut(s) 697, 1016
AcsI RAATTY 2 cut(s) 965, 1036
AcuI CTGAAG 2 cut(s) 615, 951
AcyI GRCGYC 2 cut(s) 414, 1146
AfaI GTAC 3 cut(s) 314, 860, 992
AfiI CCNNNNNNNGG 3 cut(s) 21, 160, 1088
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 5 cut(s) 54, 453, 473, 654, 911
AjnI CCWGG 2 cut(s) 682, 1081
AluBI AGCT 2 cut(s) 20, 102
AluI AGCT 2 cut(s) 20, 102
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 556
AlwI GGATC 2 cut(s) 697, 1016
AlwNI CAGNNNCTG 1 cut(s) 1088
Ama87I CYCGRG 1 cut(s) 372
Aor13HI TCCGGA 1 cut(s) 961
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 2 cut(s) 965, 1036
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 2 cut(s) 738, 1148
AspS9I GGNCC 3 cut(s) 132, 186, 583
AsuC2I CCSGG 3 cut(s) 137, 756, 863
AsuHPI GGTGA 4 cut(s) 4, 311, 880, 1126
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 3 cut(s) 132, 186, 583
BaeGI GKGCMC 2 cut(s) 761, 814
BanI GGYRCC 3 cut(s) 758, 809, 1145
BanII GRGCYC 2 cut(s) 28, 524
Bbv12I GWGCWC 1 cut(s) 260
BccI CCATC 3 cut(s) 655, 912, 1157
BceAI ACGGC 1 cut(s) 783
BcgI CGANNNNNNTGC 4 cut(s) 791, 825, 1163, 1197
BciT130I CCWGG 2 cut(s) 684, 1083
BciVI GTATCC 1 cut(s) 625
BclI TGATCA 3 cut(s) 3, 550, 829
BcnI CCSGG 3 cut(s) 137, 756, 863
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 5 cut(s) 21, 420, 612, 771, 1103
BfoI RGCGCY 1 cut(s) 1149
BfuAI ACCTGC 2 cut(s) 109, 1046
BfuI GTATCC 1 cut(s) 625
BisI GCNGC 2 cut(s) 172, 175
BlsI GCNGC 2 cut(s) 173, 176
Bme1390I CCNGG 5 cut(s) 137, 684, 756, 863, 1083
Bme18I GGWCC 3 cut(s) 132, 186, 583
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 3 cut(s) 132, 186, 583
BmiI GGNNCC 8 cut(s) 133, 134, 188, 585, 760, 811, 938, 1147
BmrFI CCNGG 5 cut(s) 137, 684, 756, 863, 1083
BmrI ACTGGG 2 cut(s) 184, 1098
BmsI GCATC 2 cut(s) 1068, 1123
BmuI ACTGGG 2 cut(s) 184, 1098
Bpu10I CCTNAGC 1 cut(s) 620
BpuMI CCSGG 3 cut(s) 137, 756, 863
Bsa29I ATCGAT 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 834
BsaHI GRCGYC 2 cut(s) 414, 1146
BsaJI CCNNGG 2 cut(s) 135, 295
BsaWI WCCGGW 3 cut(s) 785, 806, 961
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 160, 1088
Bse1I ACTGG 6 cut(s) 148, 172, 190, 537, 994, 1093
Bse3DI GCAATG 1 cut(s) 1080
Bse8I GATNNNNATC 1 cut(s) 834
BseAI TCCGGA 1 cut(s) 961
BseBI CCWGG 2 cut(s) 684, 1083
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 135, 295
BseGI GGATG 1 cut(s) 1192
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 3 cut(s) 21, 160, 1088
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 1 cut(s) 1064
BseNI ACTGG 6 cut(s) 148, 172, 190, 537, 994, 1093
BseSI GKGCMC 2 cut(s) 761, 814
BseYI CCCAGC 1 cut(s) 916
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 3 cut(s) 758, 809, 1145
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 6 cut(s) 137, 755, 786, 807, 862, 962
BslFI GGGAC 3 cut(s) 145, 523, 569
BslI CCNNNNNNNGG 3 cut(s) 21, 160, 1088
BsmAI GTCTC 1 cut(s) 556
BsmBI CGTCTC 1 cut(s) 556
BsmFI GGGAC 3 cut(s) 145, 523, 569
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 5 cut(s) 28, 260, 524, 761, 814
Bsp13I TCCGGA 1 cut(s) 961
Bsp143I GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 2 cut(s) 171, 174
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 1063
BspDI ATCGAT 1 cut(s) 429
BspEI TCCGGA 1 cut(s) 961
BspLI GGNNCC 8 cut(s) 133, 134, 188, 585, 760, 811, 938, 1147
BspMI ACCTGC 2 cut(s) 109, 1046
BspPI GGATC 2 cut(s) 697, 1016
BspT107I GGYRCC 3 cut(s) 758, 809, 1145
BsrDI GCAATG 1 cut(s) 1080
BsrI ACTGG 6 cut(s) 148, 172, 190, 537, 994, 1093
BssECI CCNNGG 2 cut(s) 135, 295
BssMI GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
BssNI GRCGYC 2 cut(s) 414, 1146
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 684, 1083
BstACI GRCGYC 2 cut(s) 414, 1146
BstDEI CTNAG 3 cut(s) 83, 620, 1050
BstDSI CCRYGG 1 cut(s) 295
BstEII GGTNACC 1 cut(s) 1132
BstF5I GGATG 1 cut(s) 1192
BstH2I RGCGCY 1 cut(s) 1149
BstHHI GCGC 2 cut(s) 738, 1148
BstKTI GATC 7 cut(s) 6, 304, 441, 553, 692, 832, 1024
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 2 cut(s) 684, 1083
BstPI GGTNACC 1 cut(s) 1132
BstSCI CCNGG 5 cut(s) 135, 682, 754, 861, 1081
BstSLI GKGCMC 2 cut(s) 761, 814
Bsu15I ATCGAT 1 cut(s) 429
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 1192
BtsIMutI CAGTG 3 cut(s) 165, 197, 530
BveI ACCTGC 2 cut(s) 109, 1046
CaiI CAGNNNCTG 1 cut(s) 1088
CfoI GCGC 2 cut(s) 738, 1148
Cfr13I GGNCC 3 cut(s) 132, 186, 583
ClaI ATCGAT 1 cut(s) 429
CseI GACGC 1 cut(s) 422
Csp6I GTAC 3 cut(s) 313, 859, 991
CspCI CAANNNNNGTGG 2 cut(s) 272, 307
CviAII CATG 4 cut(s) 296, 436, 485, 1110
CviQI GTAC 3 cut(s) 313, 859, 991
DdeI CTNAG 3 cut(s) 83, 620, 1050
DinI GGCGCC 1 cut(s) 1147
DpnI GATC 7 cut(s) 5, 303, 440, 552, 691, 831, 1023
DpnII GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 2 cut(s) 28, 524
Eco47I GGWCC 3 cut(s) 132, 186, 583
Eco57I CTGAAG 2 cut(s) 615, 951
Eco88I CYCGRG 1 cut(s) 372
Eco91I GGTNACC 1 cut(s) 1132
EcoO109I RGGNCCY 1 cut(s) 132
EcoO65I GGTNACC 1 cut(s) 1132
EcoRII CCWGG 2 cut(s) 682, 1081
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 2 cut(s) 28, 524
EgeI GGCGCC 1 cut(s) 1147
EheI GGCGCC 1 cut(s) 1147
ErhI CCWWGG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 4 cut(s) 299, 439, 488, 1113
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 3 cut(s) 145, 523, 569
FatI CATG 4 cut(s) 295, 435, 484, 1109
FbaI TGATCA 3 cut(s) 3, 550, 829
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 172, 175
FokI GGATG 1 cut(s) 1179
FriOI GRGCYC 2 cut(s) 28, 524
Fsp4HI GCNGC 2 cut(s) 172, 175
FspBI CTAG 5 cut(s) 21, 420, 612, 771, 1103
GlaI GCGC 2 cut(s) 737, 1147
GluI GCNGC 2 cut(s) 172, 175
GsaI CCCAGC 1 cut(s) 920
HaeII RGCGCY 1 cut(s) 1149
HaeIII GGCC 1 cut(s) 177
HapII CCGG 6 cut(s) 137, 755, 786, 807, 862, 962
HgaI GACGC 1 cut(s) 422
HhaI GCGC 2 cut(s) 738, 1148
Hin1I GRCGYC 2 cut(s) 414, 1146
Hin1II CATG 4 cut(s) 299, 439, 488, 1113
Hin6I GCGC 2 cut(s) 736, 1146
HinP1I GCGC 2 cut(s) 736, 1146
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 91, 527, 803, 886, 896
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 6 cut(s) 137, 755, 786, 807, 862, 962
HphI GGTGA 4 cut(s) 4, 311, 880, 1126
Hpy166II GTNNAC 6 cut(s) 12, 325, 340, 399, 661, 859
Hpy188I TCNGA 2 cut(s) 465, 885
Hpy188III TCNNGA 3 cut(s) 95, 478, 962
Hpy8I GTNNAC 6 cut(s) 12, 325, 340, 399, 661, 859
HpyAV CCTTC 3 cut(s) 261, 926, 995
HpyCH4IV ACGT 4 cut(s) 395, 565, 855, 989
HpyCH4V TGCA 2 cut(s) 118, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 3 cut(s) 83, 620, 1050
HpySE526I ACGT 4 cut(s) 395, 565, 855, 989
Hsp92I GRCGYC 2 cut(s) 414, 1146
Hsp92II CATG 4 cut(s) 299, 439, 488, 1113
HspAI GCGC 2 cut(s) 736, 1146
KasI GGCGCC 1 cut(s) 1145
KflI GGGWCCC 1 cut(s) 132
Kpn2I TCCGGA 1 cut(s) 961
Ksp22I TGATCA 3 cut(s) 3, 550, 829
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
LmnI GCTCC 1 cut(s) 1106
LweI GCATC 2 cut(s) 1068, 1123
MaeI CTAG 5 cut(s) 21, 420, 612, 771, 1103
MaeII ACGT 4 cut(s) 395, 565, 855, 989
MaeIII GTNAC 5 cut(s) 95, 212, 676, 947, 1132
MalI GATC 7 cut(s) 5, 303, 440, 552, 691, 831, 1023
MboI GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
MboII GAAGA 6 cut(s) 42, 296, 433, 642, 787, 899
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 5 cut(s) 28, 260, 524, 761, 814
Mly113I GGCGCC 1 cut(s) 1146
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 3 cut(s) 696, 709, 978
MnlI CCTC 8 cut(s) 297, 368, 680, 859, 867, 969, 991, 1122
MroI TCCGGA 1 cut(s) 961
MseI TTAA 7 cut(s) 207, 324, 707, 743, 843, 969, 1198
MspI CCGG 6 cut(s) 137, 755, 786, 807, 862, 962
MspR9I CCNGG 5 cut(s) 137, 684, 756, 863, 1083
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 738
MvaI CCWGG 2 cut(s) 684, 1083
MwoI GCNNNNNNNGC 1 cut(s) 255
NarI GGCGCC 1 cut(s) 1146
NciI CCSGG 3 cut(s) 137, 756, 863
NcoI CCATGG 1 cut(s) 295
NdeII GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
NlaIII CATG 4 cut(s) 299, 439, 488, 1113
NlaIV GGNNCC 8 cut(s) 133, 134, 188, 585, 760, 811, 938, 1147
NmuCI GTSAC 3 cut(s) 95, 676, 1132
PaeR7I CTCGAG 1 cut(s) 372
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 4 cut(s) 91, 527, 886, 896
PflMI CCANNNNNTGG 1 cut(s) 1088
PkrI GCNGC 2 cut(s) 173, 176
PleI GAGTC 1 cut(s) 797
PluTI GGCGCC 1 cut(s) 1149
PpsI GAGTC 1 cut(s) 797
PpuMI RGGWCCY 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 682, 1081
PspEI GGTNACC 1 cut(s) 1132
PspFI CCCAGC 1 cut(s) 916
PspGI CCWGG 2 cut(s) 682, 1081
PspN4I GGNNCC 8 cut(s) 133, 134, 188, 585, 760, 811, 938, 1147
PspPI GGNCC 3 cut(s) 132, 186, 583
PspPPI RGGWCCY 1 cut(s) 132
PspXI VCTCGAGB 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 1088
RsaI GTAC 3 cut(s) 314, 860, 992
RsaNI GTAC 3 cut(s) 313, 859, 991
SaqAI TTAA 7 cut(s) 207, 324, 707, 743, 843, 969, 1198
SatI GCNGC 2 cut(s) 172, 175
Sau3AI GATC 7 cut(s) 3, 301, 438, 550, 689, 829, 1021
Sau96I GGNCC 3 cut(s) 132, 186, 583
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 5 cut(s) 137, 684, 756, 863, 1083
SduI GDGCHC 5 cut(s) 28, 260, 524, 761, 814
SfaNI GCATC 2 cut(s) 1068, 1123
SfoI GGCGCC 1 cut(s) 1147
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 3 cut(s) 132, 186, 583
SlaI CTCGAG 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SsiI CCGC 2 cut(s) 171, 174
SspDI GGCGCC 1 cut(s) 1145
SspMI CTAG 5 cut(s) 21, 420, 612, 771, 1103
StyD4I CCNGG 5 cut(s) 135, 682, 754, 861, 1081
StyI CCWWGG 1 cut(s) 295
TaiI ACGT 4 cut(s) 398, 568, 858, 992
TaqI TCGA 6 cut(s) 254, 265, 373, 429, 479, 801
TauI GCSGC 2 cut(s) 174, 177
TfiI GAWTC 4 cut(s) 91, 527, 886, 896
Tru1I TTAA 7 cut(s) 207, 324, 707, 743, 843, 969, 1198
Tru9I TTAA 7 cut(s) 207, 324, 707, 743, 843, 969, 1198
TscAI CASTG 3 cut(s) 172, 197, 537
TseFI GTSAC 3 cut(s) 95, 676, 1132
Tsp45I GTSAC 3 cut(s) 95, 676, 1132
TspDTI ATGAA 5 cut(s) 36, 345, 405, 787, 861
TspRI CASTG 3 cut(s) 172, 197, 537
Van91I CCANNNNNTGG 1 cut(s) 1088
VpaK11BI GGWCC 3 cut(s) 132, 186, 583
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 2 cut(s) 965, 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 1001
XhoI CTCGAG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 5 cut(s) 21, 420, 612, 771, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.