RchiOBHm_Chr4g0399441

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
16675909 .. 16677285
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37156

Sequence Viewer

Length: 1377 bp
ATGGCAGCAGCTTCCCAACCCGTTTTAATCTTTTTCCTCATTGCAGTCTCTGCGTTCCATCAAACACTTTCGAAACCTAATGGTTTCAGCCTCAAGCTCATCCCCAGAGACTCCCCCCAGTCTCCTCTGTACCCAGGAAATCTCACTACACTTGAACGAATCGAAAGATTGATCGAGTTCTCCCGAGCCAGGGCTCGCTATGTGGAACTAACTTCGTCTCCAAATGCAACCATCTTGTACCCCGAAAACATACGTCTCACTTTGCTTCGTGATAACTTCTTCTACACGGTGCAGGTAGGTGTTGGAACTCCAGCCACAGGAGTGTTCCTGCTTCTAGACACTGGCGGTGGCCTAATCTGGACGCAGTGCCTACCTTGCTTAAATTGCTATCCGCAAAGAACTCCCATGTTCGATTCGAGTAAATCCAGCACTTATCAAAAGCTTCCTTGCAGCCACCCTTTTTGTCAAGGCGACCGTCCCCTCTACATATGTGTCAATGATGAGTGTGTCTACAACATTAACTACGGTGGAGGGGCATCCACTGCAGGCATCGCTTCCATGGAAACATTCACATTTCCAGTCGACACCGCCACTACTACTCGAATTGGTCAAATTGTTTTTGGATGCTCAAAGTATAGCGGAAACGTTCAATTTGCAAAAGGTGGTGTCATTTCAGGGGTCATGGGATTGAGCTTGTCTCCAGATTCATTGGCTTCACAGTTGTCTGATGTGACACACAAACGTTTCTCATATTGCTTGGTACCTTTCACTCAAGCACAGCAGGCACCAAGTCTGGTAAGGTTTGGGGATGATATTCCCCACCCATCCTCGAATATTCAGACAACTCCTTTTGTACCAACACCCCGATCCCATTACTTTCAATTAAATTTGTTGGACATAAGTGTCGGATTTCGCAAGCTAGGGTTTCCCCCAGGTACCTTTACGGAGAGGCCAGATGGTTCAGGCGGCTGCATCGTTGACTCCGGTGCACTGATACCTCAGATCGATCAAAATGCCCAAGGCGGACGCAACGCCTACAGGCAGGTGATGTCTGCGTTTCAGAGCTATTATAATTCTTTCCAGCAGCTTACGAGGATTGGTAAAGTGCCTCAAGGGTTTGCATTGTGTTACAAGTATCCTCAAGATTTTAATCAATTTACCAGCATGACATATCATTTTGAGGATGCGGATTATATTGTGGATCCGAAATATGTGAATTTTTATGATCAGCAGGGAGGCTACTTTTGTGTTGCGTTGTTGCCTGGAAATGGGAAGAGTATACTTGGAGCCTGGCATCAGCAAAATATGAGGGTGACGTACGATGGCAACATTAACTCACTCCAATTCTCTGTTGAGACTTGTTCTTATGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

50.62

Weight (kDa)

7.0

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 95 - 270 6.1e-42 Xylanase inhibitor N-terminal
TAXi_C PF14541 295 - 450 1.1e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07191
malus_domestica MD11G1223600.v1.1
prunus_persica Prupe.4G207600_v2.0.a1 Prupe.4G207700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399441
rosa_laevigata RLG00000009268
rosa_roxburghii Rroxscaffold_5G00344340
rosa_rugosa Rorug04G0016900
rosa_samantha Rh4BG092000 Rh4CG102900 Rh4DG086900
rosa_wichuraiana Rw4G007780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1071
AarI CACCTGC 1 cut(s) 1033
AasI GACNNNNNNGTC 1 cut(s) 902
Acc36I ACCTGC 2 cut(s) 283, 1033
Acc65I GGTACC 2 cut(s) 760, 935
AccB1I GGYRCC 3 cut(s) 760, 784, 935
AccI GTMKAC 3 cut(s) 510, 582, 1279
AciI CCGC 7 cut(s) 345, 392, 588, 639, 966, 1023, 1187
AclI AACGTT 2 cut(s) 645, 742
AclWI GGATC 3 cut(s) 861, 1196, 1209
AcsI RAATTY 2 cut(s) 886, 1216
AfaI GTAC 6 cut(s) 131, 239, 762, 855, 937, 1319
AfiI CCNNNNNNNGG 4 cut(s) 189, 190, 317, 1268
AgsI TTSAA 3 cut(s) 155, 650, 881
AjnI CCWGG 5 cut(s) 133, 188, 931, 1261, 1289
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 7 cut(s) 11, 97, 442, 693, 919, 1065, 1087
AluI AGCT 7 cut(s) 11, 97, 442, 693, 919, 1065, 1087
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
Alw44I GTGCAC 1 cut(s) 987
AlwI GGATC 3 cut(s) 861, 1196, 1209
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 2 cut(s) 349, 950
ApaLI GTGCAC 1 cut(s) 987
ApeKI GCWGC 5 cut(s) 5, 8, 450, 969, 1084
ApoI RAATTY 2 cut(s) 886, 1216
Asp718I GGTACC 2 cut(s) 760, 935
AsuHPI GGTGA 2 cut(s) 1057, 1324
AsuII TTCGAA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 991
BamHI GGATCC 1 cut(s) 1201
BanI GGYRCC 3 cut(s) 760, 784, 935
BanII GRGCYC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 5 cut(s) 17, 20, 462, 956, 1096
BccI CCATC 5 cut(s) 66, 239, 832, 950, 1316
BcgI CGANNNNNNTGC 2 cut(s) 995, 1029
BciT130I CCWGG 5 cut(s) 135, 190, 933, 1263, 1291
BciVI GTATCC 1 cut(s) 1146
BclI TGATCA 1 cut(s) 1225
BcoDI GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
BfaI CTAG 2 cut(s) 335, 920
BfmI CTRYAG 2 cut(s) 543, 1036
BfuAI ACCTGC 2 cut(s) 283, 1033
BfuI GTATCC 1 cut(s) 1146
BisI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
BlsI GCNGC 6 cut(s) 7, 10, 452, 968, 971, 1086
Bme1390I CCNGG 5 cut(s) 135, 190, 933, 1263, 1291
BmeT110I CYCGRG 1 cut(s) 183
BmiI GGNNCC 5 cut(s) 762, 786, 937, 1203, 1288
BmrFI CCNGG 5 cut(s) 135, 190, 933, 1263, 1291
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 6 cut(s) 545, 558, 614, 981, 1174, 1303
BmuI ACTGGG 1 cut(s) 112
BplI GAGNNNNNCTC 2 cut(s) 682, 714
BpmI CTGGAG 2 cut(s) 294, 684
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 4 cut(s) 77, 756, 1095, 1125
Bsa29I ATCGAT 1 cut(s) 1005
BsaBI GATNNNNATC 1 cut(s) 1149
BsaJI CCNNGG 5 cut(s) 133, 189, 558, 931, 1018
BsaWI WCCGGW 1 cut(s) 983
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 190, 317, 1268
Bse1I ACTGG 3 cut(s) 118, 346, 578
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 1149
BseBI CCWGG 5 cut(s) 135, 190, 933, 1263, 1291
BseCI ATCGAT 1 cut(s) 1005
BseDI CCNNGG 5 cut(s) 133, 189, 558, 931, 1018
BseGI GGATG 6 cut(s) 99, 536, 629, 814, 824, 1189
BseJI GATNNNNATC 1 cut(s) 1149
BseLI CCNNNNNNNGG 4 cut(s) 189, 190, 317, 1268
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 1013
BseNI ACTGG 3 cut(s) 118, 346, 578
BseRI GAGGAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 991
BseXI GCAGC 5 cut(s) 17, 20, 462, 956, 1096
BsgI GTGCAG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 2 cut(s) 351, 952
BshNI GGYRCC 3 cut(s) 760, 784, 935
BshVI ATCGAT 1 cut(s) 1005
BsiEI CGRYCG 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 991
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 984
BsiWI CGTACG 1 cut(s) 1317
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 4 cut(s) 189, 190, 317, 1268
BsmAI GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
BsmBI CGTCTC 2 cut(s) 222, 260
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 2 cut(s) 351, 952
BsoBI CYCGRG 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 196, 991
Bsp143I GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 7 cut(s) 345, 392, 588, 639, 966, 1023, 1187
BspANI GGCC 2 cut(s) 351, 952
BspCNI CTCAG 1 cut(s) 1012
BspDI ATCGAT 1 cut(s) 1005
BspLI GGNNCC 5 cut(s) 762, 786, 937, 1203, 1288
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 2 cut(s) 283, 1033
BspPI GGATC 3 cut(s) 861, 1196, 1209
BspT104I TTCGAA 1 cut(s) 71
BspT107I GGYRCC 3 cut(s) 760, 784, 935
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 3 cut(s) 118, 346, 578
BssECI CCNNGG 5 cut(s) 133, 189, 558, 931, 1018
BssMI GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
BssNAI GTATAC 1 cut(s) 1280
BssT1I CCWWGG 2 cut(s) 558, 1018
Bst1107I GTATAC 1 cut(s) 1280
Bst2UI CCWGG 5 cut(s) 135, 190, 933, 1263, 1291
Bst4CI ACNGT 4 cut(s) 289, 476, 527, 720
Bst6I CTCTTC 1 cut(s) 1268
BstAPI GCANNNNNTGC 2 cut(s) 50, 542
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 4 cut(s) 196, 547, 783, 917
BstDEI CTNAG 1 cut(s) 999
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 6 cut(s) 99, 536, 629, 814, 824, 1189
BstKTI GATC 6 cut(s) 174, 869, 1005, 1009, 1204, 1228
BstMAI GTCTC 7 cut(s) 52, 102, 126, 222, 260, 702, 1349
BstMBI GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 6 cut(s) 50, 375, 384, 542, 551, 782
BstNI CCWGG 5 cut(s) 135, 190, 933, 1263, 1291
BstSCI CCNGG 5 cut(s) 133, 188, 931, 1261, 1289
BstSFI CTRYAG 2 cut(s) 543, 1036
BstSLI GKGCMC 1 cut(s) 991
BstV1I GCAGC 5 cut(s) 17, 20, 462, 956, 1096
BstX2I RGATCY 1 cut(s) 1201
BstYI RGATCY 1 cut(s) 1201
BstZ17I GTATAC 1 cut(s) 1280
Bsu15I ATCGAT 1 cut(s) 1005
BsuI GTATCC 1 cut(s) 1146
BsuRI GGCC 2 cut(s) 351, 952
BsuTUI ATCGAT 1 cut(s) 1005
BtgI CCRYGG 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 6 cut(s) 99, 536, 629, 814, 824, 1189
BtsI GCAGTG 2 cut(s) 371, 540
BtsIMutI CAGTG 4 cut(s) 339, 371, 540, 989
BveI ACCTGC 2 cut(s) 283, 1033
Cac8I GCNNGC 4 cut(s) 196, 547, 783, 917
CaiI CAGNNNCTG 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 1005
CseI GACGC 2 cut(s) 370, 1035
Csp6I GTAC 6 cut(s) 130, 238, 761, 854, 936, 1318
CspCI CAANNNNNGTGG 2 cut(s) 443, 478
CviAII CATG 4 cut(s) 406, 559, 682, 1165
CviQI GTAC 6 cut(s) 130, 238, 761, 854, 936, 1318
DdeI CTNAG 1 cut(s) 999
DpnI GATC 6 cut(s) 173, 868, 1004, 1008, 1203, 1227
DpnII GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
Eam1104I CTCTTC 1 cut(s) 1268
EarI CTCTTC 1 cut(s) 1268
EciI GGCGGA 1 cut(s) 1038
Eco130I CCWWGG 2 cut(s) 558, 1018
Eco24I GRGCYC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 183
EcoRII CCWGG 5 cut(s) 133, 188, 931, 1261, 1289
EcoT14I CCWWGG 2 cut(s) 558, 1018
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 558, 1018
Esp3I CGTCTC 2 cut(s) 222, 260
FaeI CATG 4 cut(s) 409, 562, 685, 1168
FaqI GGGAC 1 cut(s) 462
FatI CATG 4 cut(s) 405, 558, 681, 1164
FauNDI CATATG 1 cut(s) 488
FbaI TGATCA 1 cut(s) 1225
FblI GTMKAC 3 cut(s) 510, 582, 1279
Fnu4HI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
FokI GGATG 6 cut(s) 86, 523, 636, 811, 821, 1196
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
FspBI CTAG 2 cut(s) 335, 920
GluI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
GsuI CTGGAG 2 cut(s) 294, 684
HaeIII GGCC 2 cut(s) 351, 952
HapII CCGG 1 cut(s) 984
HgaI GACGC 2 cut(s) 370, 1035
Hin1II CATG 4 cut(s) 409, 562, 685, 1168
HincII GTYRAC 2 cut(s) 583, 979
HindII GTYRAC 2 cut(s) 583, 979
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 5 cut(s) 110, 159, 413, 704, 980
HpaII CCGG 1 cut(s) 984
HphI GGTGA 2 cut(s) 1057, 1324
Hpy166II GTNNAC 5 cut(s) 511, 583, 979, 989, 1280
Hpy188I TCNGA 6 cut(s) 727, 840, 908, 1002, 1062, 1206
Hpy188III TCNNGA 6 cut(s) 183, 269, 335, 358, 701, 1142
Hpy8I GTNNAC 5 cut(s) 511, 583, 979, 989, 1280
HpyCH4III ACNGT 4 cut(s) 289, 476, 527, 720
HpyCH4IV ACGT 4 cut(s) 253, 645, 742, 1316
HpyCH4V TGCA 9 cut(s) 44, 227, 292, 450, 545, 656, 972, 989, 1121
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 375, 384, 542, 551, 782
HpyF3I CTNAG 1 cut(s) 999
HpySE526I ACGT 4 cut(s) 253, 645, 742, 1316
Hsp92II CATG 4 cut(s) 409, 562, 685, 1168
KpnI GGTACC 2 cut(s) 764, 939
Ksp22I TGATCA 1 cut(s) 1225
Kzo9I GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
LmnI GCTCC 1 cut(s) 1286
Lsp1109I GCAGC 5 cut(s) 17, 20, 462, 956, 1096
LweI GCATC 6 cut(s) 545, 558, 614, 981, 1174, 1303
MaeI CTAG 2 cut(s) 335, 920
MaeII ACGT 4 cut(s) 253, 645, 742, 1316
MaeIII GTNAC 3 cut(s) 730, 1127, 1312
MalI GATC 6 cut(s) 173, 868, 1004, 1008, 1203, 1227
MboI GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
MboII GAAGA 2 cut(s) 271, 1285
MflI RGATCY 1 cut(s) 1201
MhlI GDGCHC 2 cut(s) 196, 991
MlyI GAGTC 2 cut(s) 104, 974
MmeI TCCRAC 3 cut(s) 283, 873, 886
MseI TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 1 cut(s) 984
MspR9I CCNGG 5 cut(s) 135, 190, 933, 1263, 1291
MvaI CCWGG 5 cut(s) 135, 190, 933, 1263, 1291
MwoI GCNNNNNNNGC 6 cut(s) 50, 375, 384, 542, 551, 782
NcoI CCATGG 1 cut(s) 558
NdeI CATATG 1 cut(s) 488
NdeII GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
NlaIII CATG 4 cut(s) 409, 562, 685, 1168
NlaIV GGNNCC 5 cut(s) 762, 786, 937, 1203, 1288
NmuCI GTSAC 2 cut(s) 730, 1312
NspV TTCGAA 1 cut(s) 71
OliI CACNNNNGTG 1 cut(s) 320
PaqCI CACCTGC 1 cut(s) 1033
PfeI GAWTC 3 cut(s) 159, 413, 704
Pfl23II CGTACG 1 cut(s) 1317
PkrI GCNGC 6 cut(s) 7, 10, 452, 968, 971, 1086
PleI GAGTC 2 cut(s) 104, 974
PpsI GAGTC 2 cut(s) 104, 974
PsiI TTATAA 1 cut(s) 1071
Psp1406I AACGTT 2 cut(s) 645, 742
Psp6I CCWGG 5 cut(s) 133, 188, 931, 1261, 1289
PspGI CCWGG 5 cut(s) 133, 188, 931, 1261, 1289
PspLI CGTACG 1 cut(s) 1317
PspN4I GGNNCC 5 cut(s) 762, 786, 937, 1203, 1288
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 1201
RsaI GTAC 6 cut(s) 131, 239, 762, 855, 937, 1319
RsaNI GTAC 6 cut(s) 130, 238, 761, 854, 936, 1318
RseI CAYNNNNRTG 1 cut(s) 320
SalI GTCGAC 1 cut(s) 581
SaqAI TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
SatI GCNGC 6 cut(s) 6, 9, 451, 967, 970, 1085
Sau3AI GATC 6 cut(s) 171, 866, 1002, 1006, 1201, 1225
SchI GAGTC 2 cut(s) 104, 974
ScrFI CCNGG 5 cut(s) 135, 190, 933, 1263, 1291
SduI GDGCHC 2 cut(s) 196, 991
SfaNI GCATC 6 cut(s) 545, 558, 614, 981, 1174, 1303
SfcI CTRYAG 2 cut(s) 543, 1036
SfuI TTCGAA 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 4 cut(s) 92, 771, 1110, 1140
SmoI CTYRAG 4 cut(s) 92, 771, 1110, 1140
SsiI CCGC 7 cut(s) 345, 392, 588, 639, 966, 1023, 1187
SspI AATATT 1 cut(s) 835
SspMI CTAG 2 cut(s) 335, 920
StyD4I CCNGG 5 cut(s) 133, 188, 931, 1261, 1289
StyI CCWWGG 2 cut(s) 558, 1018
TaaI ACNGT 4 cut(s) 289, 476, 527, 720
TaiI ACGT 4 cut(s) 256, 648, 745, 1319
TaqI TCGA 9 cut(s) 71, 162, 174, 411, 416, 582, 601, 830, 1005
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 3 cut(s) 159, 413, 704
Tru1I TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
Tru9I TTAA 7 cut(s) 26, 380, 519, 884, 1149, 1332, 1375
TscAI CASTG 4 cut(s) 346, 371, 547, 996
TseFI GTSAC 2 cut(s) 730, 1312
TseI GCWGC 5 cut(s) 5, 8, 450, 969, 1084
Tsp45I GTSAC 2 cut(s) 730, 1312
TspDTI ATGAA 1 cut(s) 696
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 4 cut(s) 346, 371, 547, 996
VneI GTGCAC 1 cut(s) 987
XapI RAATTY 2 cut(s) 886, 1216
XbaI TCTAGA 1 cut(s) 334
XmiI GTMKAC 3 cut(s) 510, 582, 1279
XspI CTAG 2 cut(s) 335, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.