Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0017743

Physical Location & Seq

Genomic Coordinates Forward (+)

32770780 .. 32773694

Gene Structure 2915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1223700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATCTACTCTGTGAAGCAATACTCCGCCGTGACAAACGGGTCCGACATCTTTCTGCGGCGGAGCACACGGCCGACACAGGTGCAACGATCACTGCTTTTTCCGTCTCTTCAGGTGCAAAAGACTCAGAGACGAGTAATGTCGGTCCAAAGGGCCTTGCACCTGTCTGGAATCGGGAGTCTTGTTGGGTTGCTAAAGCCGACTCGAACAAGTGTGAACAAATGTCAGGCGTTCGAGGCCGACCGATCACAGCCGATCGAGTCCAACGTCGACATTGCGAATGTCGACGCGAAAGTGGAGGCGGCAAAGAAGCTGAAGATCGGCGTATATTTTGCTATGTGGTGGGCGCTGAACGTGGTGTTCAATATATACAATAAGAAGGTGTTGAATGCTTACCCCTTCCCATGGCTTACCTCCACTCTGTCTCTGGCATGTGGGTCTTTGATCATGCTGGTCTCCTGGGTCACCAGGATTGCTGAGGCCCCCAAAGTTGATATGGAGTTCTGGAAAGCTCTGTTTCCTGTGAGTTGCTGTGGCACATACAATTGGGCATGTAGCAGCTACGTAGTGATAAAAGGTTGGAGTTTCTTCACCCATATATCAAGAGTGGAGAGCCAGCTTTCATTGTATTTGGTTTCAGGATTCATGGGGGCCATGATATCAAACTTGGACTTTCTATTTCGACAGAAGGGCATGAAGGGGAAGTCTCGTGGAAAGGACACAGATGTGGGAAAGCTGGATTTATACAGCCTTCGCTCAAATTGGACCAACTTGATATGTTTTTATTTCGTGTATGGAGCCAGAAACTTTTGGCAATGTGTTGTAAATGCTGATTGGAACTTGAATCCCTGTAGGAGCAAAGTTTGTGTTTGTTCATTATTATATAACAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

299

Amino Acids

33.85

Weight (kDa)

9.61

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	105 - 200	1.6e-21	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017743)

Species	Orthologous Gene IDs
malus_domestica	MD11G1223700.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165631 RchiOBHm_Chr4g0433031 RchiOBHm_Chr5g0036681
rosa_multiflora	Rmu_sc0001441.1_g000002 Rmu_sc0003559.1_g000025 Rmu_sc0005571.1_g000020 Rmu_sc0011299.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218300
rosa_rugosa	Rorug05G0168900
rosa_samantha	Rh5DG269700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
AccI	GTMKAC	2 cut(s)	270, 285
AccII	CGCG	1 cut(s)	290
AciI	CCGC	4 cut(s)	27, 58, 61, 302
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	95, 335
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	364, 388, 844
AjnI	CCWGG	2 cut(s)	458, 467
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	5 cut(s)	313, 512, 561, 619, 736
AluI	AGCT	5 cut(s)	313, 512, 561, 619, 736
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	5 cut(s)	111, 124, 429, 460, 711
AoxI	GGCC	5 cut(s)	71, 153, 237, 480, 651
ApeKI	GCWGC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	6 cut(s)	42, 145, 153, 481, 651, 765
AsuHPI	GGTGA	2 cut(s)	457, 583
AvaII	GGWCC	3 cut(s)	42, 145, 765
BauI	CACGAG	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	570
BceAI	ACGGC	2 cut(s)	14, 86
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	2 cut(s)	460, 469
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	5 cut(s)	111, 124, 429, 460, 711
BfmI	CTRYAG	1 cut(s)	850
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	3 cut(s)	59, 303, 559
BlsI	GCNGC	3 cut(s)	60, 304, 560
Bme1390I	CCNGG	2 cut(s)	460, 469
Bme18I	GGWCC	3 cut(s)	42, 145, 765
BmgT120I	GGNCC	6 cut(s)	42, 145, 153, 481, 651, 765
BmiI	GGNNCC	4 cut(s)	43, 483, 652, 799
BmrFI	CCNGG	2 cut(s)	460, 469
Bpu10I	CCTNAGC	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	404, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse3DI	GCAATG	2 cut(s)	273, 821
BseBI	CCWGG	2 cut(s)	460, 469
BseDI	CCNNGG	2 cut(s)	404, 459
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	2 cut(s)	273, 821
BseMII	CTCAG	2 cut(s)	140, 468
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	3 cut(s)	74, 244, 258
BshFI	GGCC	5 cut(s)	73, 155, 239, 482, 653
BsiEI	CGRYCG	3 cut(s)	74, 244, 258
BsiHKAI	GWGCWC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	5 cut(s)	111, 124, 429, 460, 711
BsmBI	CGTCTC	2 cut(s)	111, 124
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	5 cut(s)	73, 155, 239, 482, 653
Bso31I	GGTCTC	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	4 cut(s)	27, 58, 61, 302
BspANI	GGCC	5 cut(s)	73, 155, 239, 482, 653
BspCNI	CTCAG	2 cut(s)	139, 469
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	4 cut(s)	43, 483, 652, 799
BspTNI	GGTCTC	1 cut(s)	460
BsrDI	GCAATG	2 cut(s)	273, 821
BssECI	CCNNGG	2 cut(s)	404, 459
BssMI	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
BssSI	CACGAG	1 cut(s)	708
BssT1I	CCWWGG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	708
Bst2UI	CCWGG	2 cut(s)	460, 469
Bst4CI	ACNGT	1 cut(s)	890
Bst6I	CTCTTC	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	565
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	2 cut(s)	126, 477
BstDSI	CCRYGG	1 cut(s)	404
BstEII	GGTNACC	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	6 cut(s)	6, 92, 248, 258, 321, 447
BstMAI	GTCTC	5 cut(s)	111, 124, 429, 460, 711
BstMBI	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
BstMCI	CGRYCG	3 cut(s)	74, 244, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	460, 469
BstNSI	RCATGY	2 cut(s)	435, 555
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	458, 467
BstSFI	CTRYAG	1 cut(s)	850
BstSNI	TACGTA	1 cut(s)	565
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	570
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	5 cut(s)	73, 155, 239, 482, 653
BtgI	CCRYGG	1 cut(s)	404
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	92, 895
Cac8I	GCNNGC	1 cut(s)	617
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	6 cut(s)	42, 145, 153, 481, 651, 765
CseI	GACGC	1 cut(s)	296
CviAII	CATG	7 cut(s)	405, 432, 448, 552, 646, 655, 694
DdeI	CTNAG	2 cut(s)	126, 477
DpnI	GATC	6 cut(s)	5, 91, 247, 257, 320, 446
DpnII	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	2 cut(s)	16, 76
EclXI	CGGCCG	1 cut(s)	71
Eco105I	TACGTA	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	3 cut(s)	42, 145, 765
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	95, 335
Eco91I	GGTNACC	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	153, 481
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	458, 467
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
Esp3I	CGTCTC	2 cut(s)	111, 124
FaeI	CATG	7 cut(s)	408, 435, 451, 555, 649, 658, 697
FatI	CATG	7 cut(s)	404, 431, 447, 551, 645, 654, 693
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	2 cut(s)	270, 285
Fnu4HI	GCNGC	3 cut(s)	59, 303, 559
Fsp4HI	GCNGC	3 cut(s)	59, 303, 559
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	3 cut(s)	59, 303, 559
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	5 cut(s)	73, 155, 239, 482, 653
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	7 cut(s)	408, 435, 451, 555, 649, 658, 697
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	271, 286
HindII	GTYRAC	2 cut(s)	271, 286
HinfI	GANTC	7 cut(s)	124, 171, 178, 202, 260, 642, 844
HphI	GGTGA	2 cut(s)	457, 583
Hpy166II	GTNNAC	3 cut(s)	217, 271, 286
Hpy188I	TCNGA	2 cut(s)	46, 129
Hpy188III	TCNNGA	5 cut(s)	168, 175, 505, 603, 639
Hpy8I	GTNNAC	3 cut(s)	217, 271, 286
Hpy99I	CGWCG	2 cut(s)	272, 290
HpyAV	CCTTC	5 cut(s)	373, 409, 682, 691, 761
HpyCH4III	ACNGT	1 cut(s)	890
HpyCH4IV	ACGT	3 cut(s)	267, 354, 564
HpyCH4V	TGCA	3 cut(s)	85, 118, 160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	126, 477
HpySE526I	ACGT	3 cut(s)	267, 354, 564
Hsp92II	CATG	7 cut(s)	408, 435, 451, 555, 649, 658, 697
HspAI	GCGC	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
LmnI	GCTCC	3 cut(s)	63, 797, 855
Lsp1109I	GCAGC	1 cut(s)	570
MaeII	ACGT	3 cut(s)	267, 354, 564
MaeIII	GTNAC	2 cut(s)	31, 463
MalI	GATC	6 cut(s)	5, 91, 247, 257, 320, 446
MboI	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
MboII	GAAGA	3 cut(s)	101, 328, 580
MfeI	CAATTG	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	544, 760
MlyI	GAGTC	4 cut(s)	118, 187, 196, 269
MmeI	TCCRAC	3 cut(s)	69, 288, 560
MnlI	CCTC	4 cut(s)	229, 292, 424, 472
MslI	CAYNNNNRTG	1 cut(s)	725
MspR9I	CCNGG	2 cut(s)	460, 469
MunI	CAATTG	1 cut(s)	544
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	460, 469
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
NlaIII	CATG	7 cut(s)	408, 435, 451, 555, 649, 658, 697
NlaIV	GGNNCC	4 cut(s)	43, 483, 652, 799
NmuCI	GTSAC	2 cut(s)	31, 463
NspI	RCATGY	2 cut(s)	435, 555
OliI	CACNNNNGTG	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	171, 642, 844
PkrI	GCNGC	3 cut(s)	60, 304, 560
Ple19I	CGATCG	1 cut(s)	258
PleI	GAGTC	4 cut(s)	118, 186, 196, 268
PpsI	GAGTC	4 cut(s)	118, 186, 196, 268
Ppu21I	YACGTR	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	458, 467
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	2 cut(s)	458, 467
PspN4I	GGNNCC	4 cut(s)	43, 483, 652, 799
PspPI	GGNCC	6 cut(s)	42, 145, 153, 481, 651, 765
PvuI	CGATCG	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	725
SalI	GTCGAC	2 cut(s)	269, 284
SatI	GCNGC	3 cut(s)	59, 303, 559
Sau3AI	GATC	6 cut(s)	3, 89, 245, 255, 318, 444
Sau96I	GGNCC	6 cut(s)	42, 145, 153, 481, 651, 765
SchI	GAGTC	4 cut(s)	118, 187, 196, 269
ScrFI	CCNGG	2 cut(s)	460, 469
SduI	GDGCHC	1 cut(s)	68
SfcI	CTRYAG	1 cut(s)	850
SinI	GGWCC	3 cut(s)	42, 145, 765
SmiMI	CAYNNNNRTG	1 cut(s)	725
SnaBI	TACGTA	1 cut(s)	565
Sse9I	AATT	2 cut(s)	544, 760
SsiI	CCGC	4 cut(s)	27, 58, 61, 302
StyD4I	CCNGG	2 cut(s)	458, 467
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	890
TaiI	ACGT	3 cut(s)	270, 357, 567
TaqI	TCGA	6 cut(s)	205, 234, 258, 270, 285, 682
TaqII	GACCGA	2 cut(s)	133, 258
TasI	AATT	2 cut(s)	544, 760
TauI	GCSGC	2 cut(s)	61, 305
TfiI	GAWTC	3 cut(s)	171, 642, 844
TscAI	CASTG	2 cut(s)	99, 895
TseFI	GTSAC	2 cut(s)	31, 463
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	2 cut(s)	31, 463
TspDTI	ATGAA	4 cut(s)	612, 634, 710, 864
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	99, 895
VpaK11BI	GGWCC	3 cut(s)	42, 145, 765
XceI	RCATGY	2 cut(s)	435, 555
XcmI	CCANNNNNNNNNTGG	2 cut(s)	424, 493
XmiI	GTMKAC	2 cut(s)	270, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.