Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011299.1

Orthogroup ID

OG0017743

Physical Location & Seq

Genomic Coordinates Reverse (-)

13686 .. 15331

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011299.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgtggtgggctctgaatgtggtgttcaatatttacaataagaaggtgttgaatgcgtacccgttcccttggttgacctccactgtatctctggcatgtgggtctttgatcatgttggtgtcttgggctaccaggattgttgaggcgcccaagactgatatggatttttggaaggctctttttcctaagctttggctctgcaactggtctgttctctctttgcaaagcgggtttgagaggatgagatgcaactttgagttggttggagaagaaggcccgggacagttggtattagagccaactcggctcaagaagctcactaccatgactggcaaaatgtcgaaccaacaacgattcgattggaccgagttatggcccttgaaaaatcaaaagctcgaggaagtggaagggagagaagtgaagaagaagcttccgttccgaacgagcgcgcagataggggtgatgagtgatgcccttgatacactccagatgacagtggacactatggcagaagatgtccgagccaccattgatgctttcaaaaatgagctggtggagatgaataccaagctcaacttgaccatcgtgcgatgggaaaccaacctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

202

Amino Acids

23.42

Weight (kDa)

7.64

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017743)

Species	Orthologous Gene IDs
malus_domestica	MD11G1223700.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165631 RchiOBHm_Chr4g0433031 RchiOBHm_Chr5g0036681
rosa_multiflora	Rmu_sc0001441.1_g000002 Rmu_sc0003559.1_g000025 Rmu_sc0005571.1_g000020 Rmu_sc0011299.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218300
rosa_rugosa	Rorug05G0168900
rosa_samantha	Rh5DG269700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccII	CGCG	1 cut(s)	449
AciI	CCGC	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	28, 52, 382, 541
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	6 cut(s)	190, 316, 394, 430, 550, 571
AluI	AGCT	6 cut(s)	190, 316, 394, 430, 550, 571
Ama87I	CYCGRG	2 cut(s)	277, 395
AoxI	GGCC	2 cut(s)	274, 374
AspLEI	GCGC	3 cut(s)	148, 449, 451
AspS9I	GGNCC	3 cut(s)	275, 363, 375
AsuC2I	CCSGG	2 cut(s)	278, 279
AsuHPI	GGTGA	1 cut(s)	472
AvaI	CYCGRG	2 cut(s)	277, 395
AvaII	GGWCC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	13
BccI	CCATC	2 cut(s)	585, 590
BciT130I	CCWGG	1 cut(s)	133
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	2 cut(s)	278, 279
BfoI	RGCGCY	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	304
Bme1390I	CCNGG	3 cut(s)	133, 278, 279
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	2 cut(s)	277, 395
BmgT120I	GGNCC	3 cut(s)	275, 363, 375
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	3 cut(s)	133, 278, 279
BmsI	GCATC	3 cut(s)	236, 460, 523
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	2 cut(s)	278, 279
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	68, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	209, 334
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	68, 277
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseNI	ACTGG	2 cut(s)	209, 334
BsePI	GCGCGC	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	2 cut(s)	276, 376
BshNI	GGYRCC	1 cut(s)	145
BsiHKCI	CYCGRG	2 cut(s)	277, 395
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	276, 376
BsoBI	CYCGRG	2 cut(s)	277, 395
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	276, 376
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	209, 334
BssECI	CCNNGG	2 cut(s)	68, 277
BssHII	GCGCGC	1 cut(s)	447
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	3 cut(s)	85, 285, 496
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	3 cut(s)	148, 449, 451
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 313
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	3 cut(s)	131, 276, 277
BstUI	CGCG	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	276, 376
BtgZI	GCGATG	1 cut(s)	604
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	81, 501
Cac8I	GCNNGC	1 cut(s)	449
CfoI	GCGC	3 cut(s)	148, 449, 451
Cfr13I	GGNCC	3 cut(s)	275, 363, 375
Cfr9I	CCCGGG	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	3 cut(s)	96, 112, 325
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	186
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	363
Eco88I	CYCGRG	2 cut(s)	277, 395
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	99, 115, 328
FaiI	YATR	7 cut(s)	97, 113, 161, 326, 373, 506, 607
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	3 cut(s)	95, 111, 324
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	108
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	13
GlaI	GCGC	3 cut(s)	147, 448, 450
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	276, 376
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	3 cut(s)	148, 449, 451
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	99, 115, 328
Hin6I	GCGC	3 cut(s)	146, 447, 449
HinP1I	GCGC	3 cut(s)	146, 447, 449
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	2 cut(s)	188, 428
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	75, 499
Hpy188I	TCNGA	3 cut(s)	15, 440, 521
Hpy188III	TCNNGA	2 cut(s)	310, 487
Hpy8I	GTNNAC	2 cut(s)	75, 499
HpyAV	CCTTC	4 cut(s)	37, 166, 266, 401
HpyCH4III	ACNGT	3 cut(s)	85, 285, 496
HpyCH4V	TGCA	3 cut(s)	201, 223, 249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 313
HpyF3I	CTNAG	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	99, 115, 328
HspAI	GCGC	3 cut(s)	146, 447, 449
KasI	GGCGCC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	8 cut(s)	77, 118, 145, 190, 291, 315, 500, 536
LweI	GCATC	3 cut(s)	236, 460, 523
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	4 cut(s)	281, 433, 436, 524
MhlI	GDGCHC	1 cut(s)	13
Mly113I	GGCGCC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	88, 136, 231, 391
MslI	CAYNNNNRTG	2 cut(s)	116, 323
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	3 cut(s)	133, 278, 279
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	304, 313
NarI	GGCGCC	1 cut(s)	146
NciI	CCSGG	2 cut(s)	278, 279
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	99, 115, 328
NlaIV	GGNNCC	1 cut(s)	147
NmeAIII	GCCGAG	1 cut(s)	283
NspI	RCATGY	1 cut(s)	99
PaeR7I	CTCGAG	1 cut(s)	395
PauI	GCGCGC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	354
PluTI	GGCGCC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	275, 363, 375
PspXI	VCTCGAGB	1 cut(s)	395
PteI	GCGCGC	1 cut(s)	447
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	116, 323
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	3 cut(s)	275, 363, 375
ScrFI	CCNGG	3 cut(s)	133, 278, 279
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	9 cut(s)	48, 80, 192, 318, 396, 432, 552, 573, 606
SfaNI	GCATC	3 cut(s)	236, 460, 523
SfoI	GGCGCC	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	363
SlaI	CTCGAG	1 cut(s)	395
SmaI	CCCGGG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	116, 323
SmlI	CTYRAG	2 cut(s)	308, 395
SmoI	CTYRAG	2 cut(s)	308, 395
SsiI	CCGC	1 cut(s)	228
SspDI	GGCGCC	1 cut(s)	145
SspI	AATATT	1 cut(s)	31
StyD4I	CCNGG	3 cut(s)	131, 276, 277
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	85, 285, 496
TaqI	TCGA	3 cut(s)	341, 357, 396
TaqII	GACCGA	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	354
TscAI	CASTG	2 cut(s)	88, 501
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	423
TspMI	CCCGGG	1 cut(s)	277
TspRI	CASTG	2 cut(s)	88, 501
VpaK11BI	GGWCC	1 cut(s)	363
XceI	RCATGY	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 157
XhoI	CTCGAG	1 cut(s)	395
XmaI	CCCGGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.