Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003559.1

Orthogroup ID

OG0017743

Physical Location & Seq

Genomic Coordinates Forward (+)

89065 .. 90518

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003559.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtatgaaccttcttcaactcgttgtgctctacacgcgaggaagttgaagatcggtgtgtattttgctatgtggtgggctctgaatgtggtgttcaatatttacaataagaaggtgttgaatgcgtacccgttcccttggttgacctccactgtatctctggcatgtgggtctttgatcatgttggtgtcttgggctaccaagattgttgaggcgcccaagactgatatggatttttggaaggctctttttcctaagctttggctctgcaactggtctgttctctctttgcaaagcgggtttgagaggatgagatgcaactttgagttggttggagaagaaggcccgggacagttggtattagagctaactcggctcaagaagcttactaccatgactggcaaaatgtcgaaccaacaacgattcgattggtatgaccaacaactcggagaacttgcgggggtgcccaacaaattgattgatcttactgccttgttagaccgcgtcaacctagaaggtttggcggctctgatgacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

179

Amino Acids

20.46

Weight (kDa)

8.9

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017743)

Species	Orthologous Gene IDs
malus_domestica	MD11G1223700.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165631 RchiOBHm_Chr4g0433031 RchiOBHm_Chr5g0036681
rosa_multiflora	Rmu_sc0001441.1_g000002 Rmu_sc0003559.1_g000025 Rmu_sc0005571.1_g000020 Rmu_sc0011299.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218300
rosa_rugosa	Rorug05G0168900
rosa_samantha	Rh5DG269700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	214, 463
AccII	CGCG	2 cut(s)	38, 504
AciI	CCGC	4 cut(s)	297, 458, 502, 524
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	18, 49, 97, 121
AluBI	AGCT	3 cut(s)	259, 367, 385
AluI	AGCT	3 cut(s)	259, 367, 385
Alw21I	GWGCWC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	344
AsuC2I	CCSGG	2 cut(s)	347, 348
AvaI	CYCGRG	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	468
BanI	GGYRCC	2 cut(s)	214, 463
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	347, 348
BfaI	CTAG	1 cut(s)	512
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	347, 348
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	216, 465
BmrFI	CCNGG	2 cut(s)	347, 348
BmsI	GCATC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	347, 348
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	137, 346
Bse1I	ACTGG	2 cut(s)	278, 403
BseDI	CCNNGG	2 cut(s)	137, 346
BseGI	GGATG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	278, 403
BseSI	GKGCMC	1 cut(s)	468
Bsh1236I	CGCG	2 cut(s)	38, 504
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	2 cut(s)	214, 463
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	3 cut(s)	31, 82, 468
Bsp143I	GATC	3 cut(s)	51, 177, 481
BspACI	CCGC	4 cut(s)	297, 458, 502, 524
BspANI	GGCC	1 cut(s)	345
BspFNI	CGCG	2 cut(s)	38, 504
BspLI	GGNNCC	2 cut(s)	216, 465
BspT107I	GGYRCC	2 cut(s)	214, 463
BsrI	ACTGG	2 cut(s)	278, 403
BssECI	CCNNGG	2 cut(s)	137, 346
BssMI	GATC	3 cut(s)	51, 177, 481
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	154, 354
BstACI	GRCGYC	1 cut(s)	215
BstDEI	CTNAG	2 cut(s)	255, 537
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	2 cut(s)	38, 504
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	54, 180, 484
BstMBI	GATC	3 cut(s)	51, 177, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 373, 382
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	345, 346
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	2 cut(s)	38, 504
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	150
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	344
Cfr9I	CCCGGG	1 cut(s)	346
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	3 cut(s)	165, 181, 394
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	255, 537
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	3 cut(s)	53, 179, 483
DpnII	GATC	3 cut(s)	51, 177, 481
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	82
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	168, 184, 397
FaiI	YATR	7 cut(s)	6, 71, 166, 182, 230, 395, 435
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	3 cut(s)	164, 180, 393
FauI	CCCGC	2 cut(s)	290, 451
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	168, 184, 397
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	144, 508
HindII	GTYRAC	2 cut(s)	144, 508
HindIII	AAGCTT	2 cut(s)	257, 383
HinfI	GANTC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	144, 508
Hpy188I	TCNGA	3 cut(s)	84, 449, 531
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	144, 508
HpyAV	CCTTC	5 cut(s)	21, 106, 235, 335, 509
HpyCH4III	ACNGT	2 cut(s)	154, 354
HpyCH4V	TGCA	3 cut(s)	270, 292, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 373, 382
HpyF3I	CTNAG	2 cut(s)	255, 537
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	168, 184, 397
HspAI	GCGC	1 cut(s)	215
KasI	GGCGCC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	51, 177, 481
LpnPI	CCDG	4 cut(s)	146, 259, 360, 384
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	512
MalI	GATC	3 cut(s)	53, 179, 483
MboI	GATC	3 cut(s)	51, 177, 481
MboII	GAAGA	3 cut(s)	6, 61, 350
MhlI	GDGCHC	3 cut(s)	31, 82, 468
MluCI	AATT	1 cut(s)	473
Mly113I	GGCGCC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	33, 157, 205, 300
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	347, 348
Mva1269I	GAATGC	1 cut(s)	127
MvnI	CGCG	2 cut(s)	38, 504
MwoI	GCNNNNNNNGC	3 cut(s)	35, 373, 382
NarI	GGCGCC	1 cut(s)	215
NciI	CCSGG	2 cut(s)	347, 348
NdeII	GATC	3 cut(s)	51, 177, 481
NlaIII	CATG	3 cut(s)	168, 184, 397
NlaIV	GGNNCC	2 cut(s)	216, 465
NmeAIII	GCCGAG	1 cut(s)	352
NspI	RCATGY	1 cut(s)	168
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	526
PluTI	GGCGCC	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	216, 465
PspPI	GGNCC	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	503
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	185
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	3 cut(s)	51, 177, 481
Sau96I	GGNCC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	347, 348
SduI	GDGCHC	3 cut(s)	31, 82, 468
SetI	ASST	8 cut(s)	13, 117, 149, 261, 369, 387, 513, 520
SfaNI	GCATC	1 cut(s)	305
SfoI	GGCGCC	1 cut(s)	216
SmaI	CCCGGG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	473
SsiI	CCGC	4 cut(s)	297, 458, 502, 524
SspDI	GGCGCC	1 cut(s)	214
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	345, 346
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	154, 354
TaqI	TCGA	2 cut(s)	410, 426
TasI	AATT	1 cut(s)	473
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	1 cut(s)	423
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	21
TspMI	CCCGGG	1 cut(s)	346
TspRI	CASTG	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	503
XceI	RCATGY	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	2 cut(s)	157, 226
XmaI	CCCGGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.