Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001441.1

Orthogroup ID

OG0017743

Physical Location & Seq

Genomic Coordinates Forward (+)

605 .. 2370

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001441.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgtggtgggctctgaatgtggtgttcaatatttacaataagaaggtgttgaatgtgtacccgttcccttggttgacctccactctgtctctggcatgtgggtctttgatcatgttggtgtcttgggctaccaggattgttgaggcgcccaagactgatatgaatttttggaaggctctttttcctgctgagcaaagcaatcactgggaagttcggaaaaagcacggtatcggtggccgtagcactggcagtcggctcttggagagactaggactggaagtacggtcgcccggtttcaacaaggttgaaggtttgcttcggggaggctttgtaatcgctgggattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

116

Amino Acids

13.11

Weight (kDa)

9.91

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017743)

Species	Orthologous Gene IDs
malus_domestica	MD11G1223700.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165631 RchiOBHm_Chr4g0433031 RchiOBHm_Chr5g0036681
rosa_multiflora	Rmu_sc0001441.1_g000002 Rmu_sc0003559.1_g000025 Rmu_sc0005571.1_g000020 Rmu_sc0011299.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218300
rosa_rugosa	Rorug05G0168900
rosa_samantha	Rh5DG269700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	59, 282
AgsI	TTSAA	4 cut(s)	28, 52, 298, 308
AjnI	CCWGG	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	93, 259
AoxI	GGCC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	133
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	93, 259
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	133, 291
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	133, 291
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bse1I	ACTGG	3 cut(s)	209, 250, 279
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	209, 250, 279
BseYI	CCCAGC	1 cut(s)	338
Bsh1285I	CGRYCG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	93, 259
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	209, 250, 279
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	227, 285
BstACI	GRCGYC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	93, 259
BstMBI	GATC	1 cut(s)	108
BstMCI	CGRYCG	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	131, 289
BsuRI	GGCC	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	202, 243
CfoI	GCGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	58, 281
CviAII	CATG	2 cut(s)	96, 112
CviJI	RGCY	6 cut(s)	11, 128, 176, 237, 256, 327
CviKI_1	RGCY	6 cut(s)	11, 128, 176, 237, 256, 327
CviQI	GTAC	2 cut(s)	58, 281
DdeI	CTNAG	1 cut(s)	189
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	99, 115
FaiI	YATR	3 cut(s)	97, 113, 161
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	2 cut(s)	95, 111
FbaI	TGATCA	1 cut(s)	108
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	99, 115
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	58, 75
Hpy188I	TCNGA	2 cut(s)	15, 216
Hpy8I	GTNNAC	2 cut(s)	58, 75
HpyAV	CCTTC	3 cut(s)	37, 166, 302
HpyCH4III	ACNGT	2 cut(s)	227, 285
HpyF3I	CTNAG	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	99, 115
HspAI	GCGC	1 cut(s)	146
KasI	GGCGCC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	9 cut(s)	77, 118, 145, 190, 198, 231, 260, 304, 324
MaeI	CTAG	1 cut(s)	269
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	163
Mly113I	GGCGCC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	88, 136, 317
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	133, 291
MvaI	CCWGG	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	99, 115
NlaIV	GGNNCC	1 cut(s)	147
NspI	RCATGY	1 cut(s)	99
PluTI	GGCGCC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	147
RsaI	GTAC	2 cut(s)	59, 282
RsaNI	GTAC	2 cut(s)	58, 281
RseI	CAYNNNNRTG	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	133, 291
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	4 cut(s)	48, 80, 306, 313
SfoI	GGCGCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	163
SspDI	GGCGCC	1 cut(s)	145
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	131, 289
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	227, 285
TasI	AATT	1 cut(s)	163
TscAI	CASTG	2 cut(s)	209, 250
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	209, 250
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.