Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0017743

Physical Location & Seq

Genomic Coordinates Forward (+)

32725793 .. 32730799

Gene Structure 5007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG269700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATCTGCTCTGTGAAACAATCCCCGGCGATCACAAATGGCTGTGATGTTTTTCTCCGGCCAAAAGCTCGGCCGTCGGTGCAAGGATCTTTGCATTTGCCGTCTCTGCCTTTGAAGAGCTTTCAAAGGTCGGTGCTTTCGGTACAGAAGCCTCTGCACGTGTCTAGCATAGAGACCTTTGGATCACTCAAGGCTCGAACGAGTTTGATCAAATGTCAGGCGTACGAGGCAGATCAGTCAGAGCCGATCGAGCTTCCAAAGGTGGACACTCGATCGGAGGCGGCCAAGAAGTTGAAGATCGGTGTGTATTTTGCTATGTGGTGGGCTCTGAATGTGGTGTTCAATATTTACAATAAGAAGGTGTTGAATGCGTACCCGTTTCCTTGGTTGACCTCCACTCTGTCTTTGGCATGTGGGTCTTTGATCATGTTGGTGTCTTGGGCTACCAGGATTGCTGAGGCGCCCAAGACTGATATGGATTTTTGGAAGGCTCTGTTTCCTGTTGCTGTGGCACATACAATTGGACATGTAGCTGCAACTGTTAGCATGTCTAAGGTTGCAGTTTCTTTCACCCATATCATCAAGAGTGGAGAGCCTGCTTTTAGTGTATTGGTTTCGAGGTTCCTGCTGGGCGAGTCCTTCCCTACTTCAGTCTACCTCTCCCTTCTTCCAATCATTGGTGGTTGTGGTCTTGCTGCTCTGACAGAGCTTAATTTTAACATGATTGGATTCATGGGGGCCATGATATCAAACTTGGCATTTGTCTTCCGAAACATATTTTCAAAGAAGGGCATGAAGGGGAAGTCTGTTAGCGGAATGAATTATTATGCTTGTCTATCTATTATGTCTCTCATAATTCTCACACCATTTGCAATTGCGGTGGAGGGACCCAAGATGTGGGCAGCTGGATTTGAAACAGCCATGGCGCAAATTGGTCCCAACTTGATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

317

Amino Acids

34.57

Weight (kDa)

9.55

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	98 - 304	2.2e-82	Triose-phosphate Transporter family
EamA	PF00892	105 - 231	5.1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017743)

Species	Orthologous Gene IDs
malus_domestica	MD11G1223700.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165631 RchiOBHm_Chr4g0433031 RchiOBHm_Chr5g0036681
rosa_multiflora	Rmu_sc0001441.1_g000002 Rmu_sc0003559.1_g000025 Rmu_sc0005571.1_g000020 Rmu_sc0011299.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218300
rosa_rugosa	Rorug05G0168900
rosa_samantha	Rh5DG269700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccB7I	CCANNNNNTGG	2 cut(s)	677, 897
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	3 cut(s)	281, 813, 878
AclWI	GGATC	2 cut(s)	94, 190
AcoI	YGGCCR	3 cut(s)	59, 71, 282
AcuI	CTGAAG	1 cut(s)	633
AcvI	CACGTG	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	3 cut(s)	144, 224, 374
AfiI	CCNNNNNNNGG	2 cut(s)	677, 897
AflIII	ACRYGT	2 cut(s)	159, 526
AgsI	TTSAA	7 cut(s)	115, 125, 295, 343, 367, 783, 914
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	6 cut(s)	68, 120, 253, 533, 709, 905
AluI	AGCT	6 cut(s)	68, 120, 253, 533, 709, 905
Alw26I	GTCTC	3 cut(s)	108, 167, 852
AlwI	GGATC	2 cut(s)	94, 190
AoxI	GGCC	4 cut(s)	59, 71, 282, 738
ApeKI	GCWGC	3 cut(s)	533, 695, 902
AspLEI	GCGC	2 cut(s)	463, 928
AspS9I	GGNCC	3 cut(s)	738, 887, 935
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	887, 935
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	757
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	520, 682, 914
BceAI	ACGGC	2 cut(s)	58, 85
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	1 cut(s)	448
BclI	TGATCA	2 cut(s)	207, 423
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	108, 167, 852
BfaI	CTAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	464
BisI	GCNGC	4 cut(s)	282, 534, 696, 903
BlsI	GCNGC	4 cut(s)	283, 535, 697, 904
Bme1390I	CCNGG	2 cut(s)	26, 448
Bme18I	GGWCC	2 cut(s)	887, 935
BmgT120I	GGNCC	3 cut(s)	738, 887, 935
BmiI	GGNNCC	6 cut(s)	462, 623, 739, 888, 889, 937
BmrFI	CCNGG	2 cut(s)	26, 448
BpiI	GAAGAC	1 cut(s)	757
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	160
BsaHI	GRCGYC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	24, 383, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 897
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	3 cut(s)	24, 383, 921
BseLI	CCNNNNNNNGG	2 cut(s)	677, 897
BseMII	CTCAG	1 cut(s)	447
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	520, 682, 914
BseYI	CCCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	140
Bsh1285I	CGRYCG	3 cut(s)	74, 249, 275
BshFI	GGCC	4 cut(s)	61, 73, 284, 740
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	3 cut(s)	74, 249, 275
BsiSI	CCGG	2 cut(s)	26, 58
BsiWI	CGTACG	1 cut(s)	222
BslFI	GGGAC	2 cut(s)	900, 921
BslI	CCNNNNNNNGG	2 cut(s)	677, 897
BsmAI	GTCTC	3 cut(s)	108, 167, 852
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	2 cut(s)	900, 921
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	61, 73, 284, 740
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	3 cut(s)	281, 813, 878
BspANI	GGCC	4 cut(s)	61, 73, 284, 740
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	6 cut(s)	462, 623, 739, 888, 889, 937
BspPI	GGATC	2 cut(s)	94, 190
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	24, 383, 921
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	2 cut(s)	383, 921
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	456, 552
BstDSI	CCRYGG	1 cut(s)	921
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	463, 928
BstMAI	GTCTC	3 cut(s)	108, 167, 852
BstMCI	CGRYCG	3 cut(s)	74, 249, 275
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 106, 227, 250
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	3 cut(s)	414, 530, 550
BstSCI	CCNGG	2 cut(s)	24, 446
BstV1I	GCAGC	3 cut(s)	520, 682, 914
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	61, 73, 284, 740
BtgI	CCRYGG	1 cut(s)	921
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	2 cut(s)	463, 928
Cfr13I	GGNCC	3 cut(s)	738, 887, 935
Csp6I	GTAC	3 cut(s)	143, 223, 373
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviAII	CATG	9 cut(s)	411, 427, 527, 547, 721, 733, 742, 793, 922
CviQI	GTAC	3 cut(s)	143, 223, 373
DdeI	CTNAG	2 cut(s)	456, 552
DinI	GGCGCC	1 cut(s)	462
EaeI	YGGCCR	3 cut(s)	59, 71, 282
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	383, 921
Eco24I	GRGCYC	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	887, 935
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	633
Eco72I	CACGTG	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	383, 921
EcoT38I	GRGCYC	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	383, 921
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	9 cut(s)	414, 430, 530, 550, 724, 736, 745, 796, 925
FaqI	GGGAC	2 cut(s)	900, 921
FatI	CATG	9 cut(s)	410, 426, 526, 546, 720, 732, 741, 792, 921
FbaI	TGATCA	2 cut(s)	207, 423
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	282, 534, 696, 903
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	282, 534, 696, 903
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	2 cut(s)	462, 927
GluI	GCNGC	4 cut(s)	282, 534, 696, 903
GsaI	CCCAGC	1 cut(s)	632
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	4 cut(s)	61, 73, 284, 740
HapII	CCGG	2 cut(s)	26, 58
HhaI	GCGC	2 cut(s)	463, 928
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	9 cut(s)	414, 430, 530, 550, 724, 736, 745, 796, 925
Hin6I	GCGC	2 cut(s)	461, 926
HinP1I	GCGC	2 cut(s)	461, 926
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	635, 729
HpaII	CCGG	2 cut(s)	26, 58
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	3 cut(s)	265, 390, 655
Hpy188I	TCNGA	5 cut(s)	241, 277, 330, 702, 770
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	3 cut(s)	265, 390, 655
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	6 cut(s)	352, 481, 649, 674, 781, 790
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	6 cut(s)	82, 94, 157, 536, 560, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 106, 227, 250
HpyF3I	CTNAG	2 cut(s)	456, 552
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	9 cut(s)	414, 430, 530, 550, 724, 736, 745, 796, 925
HspAI	GCGC	2 cut(s)	461, 926
KasI	GGCGCC	1 cut(s)	460
KflI	GGGWCCC	1 cut(s)	887
Ksp22I	TGATCA	2 cut(s)	207, 423
LguI	GCTCTTC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	520, 682, 914
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	159
MboII	GAAGA	4 cut(s)	127, 307, 659, 757
MfeI	CAATTG	2 cut(s)	519, 873
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	6 cut(s)	519, 712, 820, 855, 873, 930
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	644
MnlI	CCTC	8 cut(s)	162, 220, 271, 403, 451, 612, 668, 877
MseI	TTAA	2 cut(s)	711, 717
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	2 cut(s)	26, 58
MspR9I	CCNGG	2 cut(s)	26, 448
MunI	CAATTG	2 cut(s)	519, 873
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	79, 106, 227, 250
NarI	GGCGCC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	921
NlaIII	CATG	9 cut(s)	414, 430, 530, 550, 724, 736, 745, 796, 925
NlaIV	GGNNCC	6 cut(s)	462, 623, 739, 888, 889, 937
NmeAIII	GCCGAG	1 cut(s)	49
NspI	RCATGY	3 cut(s)	414, 530, 550
PciI	ACATGT	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	729
Pfl23II	CGTACG	1 cut(s)	222
PflMI	CCANNNNNTGG	2 cut(s)	677, 897
PkrI	GCNGC	4 cut(s)	283, 535, 697, 904
Ple19I	CGATCG	2 cut(s)	249, 275
PleI	GAGTC	1 cut(s)	643
PluTI	GGCGCC	1 cut(s)	464
PmaCI	CACGTG	1 cut(s)	160
PmlI	CACGTG	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	643
Ppu21I	YACGTR	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	887
PscI	ACATGT	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	446
PspCI	CACGTG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	446
PspLI	CGTACG	1 cut(s)	222
PspN4I	GGNNCC	6 cut(s)	462, 623, 739, 888, 889, 937
PspPI	GGNCC	3 cut(s)	738, 887, 935
PspPPI	RGGWCCY	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	86
PvuI	CGATCG	2 cut(s)	249, 275
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	3 cut(s)	144, 224, 374
RsaNI	GTAC	3 cut(s)	143, 223, 373
RseI	CAYNNNNRTG	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	711, 717
SatI	GCNGC	4 cut(s)	282, 534, 696, 903
Sau96I	GGNCC	3 cut(s)	738, 887, 935
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	26, 448
SduI	GDGCHC	1 cut(s)	328
SfoI	GGCGCC	1 cut(s)	462
SinI	GGWCC	2 cut(s)	887, 935
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	6 cut(s)	519, 712, 820, 855, 873, 930
SsiI	CCGC	3 cut(s)	281, 813, 878
SspDI	GGCGCC	1 cut(s)	460
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	24, 446
StyI	CCWWGG	2 cut(s)	383, 921
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	4 cut(s)	196, 249, 271, 617
TasI	AATT	6 cut(s)	519, 712, 820, 855, 873, 930
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	729
Tru1I	TTAA	2 cut(s)	711, 717
Tru9I	TTAA	2 cut(s)	711, 717
TseI	GCWGC	3 cut(s)	533, 695, 902
TspDTI	ATGAA	3 cut(s)	721, 809, 833
Van91I	CCANNNNNTGG	2 cut(s)	677, 897
VpaK11BI	GGWCC	2 cut(s)	887, 935
XceI	RCATGY	3 cut(s)	414, 530, 550
XcmI	CCANNNNNNNNNTGG	2 cut(s)	403, 472
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.