Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017743

Physical Location & Seq

Genomic Coordinates Forward (+)

492006 .. 493565

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTGGTGGGCTCTGAATGTGGTGTTCAATATTTACAATAAGAAGGTGTTGAATGTGTACCCGTTCCCTTGGTTGACCTCCACTCTGTCTCTGGCATGTGGGTCTTTGATCATTTTGGTGTCTTGGGCTACCAGGATTGTTGAGGCTCCCAAGACTGATATGGATTTTTGGAAGGCTCTTTTTCCTGTAAGTTTGATTTGGGTTTTGTTTGGCTGGTTCCTTTTGAATTGTTTTTGGTTTTGTGTAAATGATGGATGGAGTTTGCTGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

91

Amino Acids

10.77

Weight (kDa)

8.96

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 68	1.9e-18	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017743)

Species	Orthologous Gene IDs
malus_domestica	MD11G1223700.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165631 RchiOBHm_Chr4g0433031 RchiOBHm_Chr5g0036681
rosa_multiflora	Rmu_sc0001441.1_g000002 Rmu_sc0003559.1_g000025 Rmu_sc0005571.1_g000020 Rmu_sc0011299.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218300
rosa_rugosa	Rorug05G0168900
rosa_samantha	Rh5DG269700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	28, 52, 226
AjnI	CCWGG	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	13
BccI	CCATC	2 cut(s)	245, 249
BciT130I	CCWGG	1 cut(s)	133
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	147, 218
BmrFI	CCNGG	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	147, 218
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	96
CviJI	RGCY	5 cut(s)	11, 128, 146, 176, 213
CviKI_1	RGCY	5 cut(s)	11, 128, 146, 176, 213
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	99
FaiI	YATR	2 cut(s)	97, 161
FatI	CATG	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	108
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	58, 75
Hpy188I	TCNGA	1 cut(s)	15
Hpy8I	GTNNAC	2 cut(s)	58, 75
HpyAV	CCTTC	2 cut(s)	37, 166
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	77, 118, 145, 198, 199
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	2 cut(s)	88, 136
MslI	CAYNNNNRTG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	99
NlaIV	GGNNCC	2 cut(s)	147, 218
NspI	RCATGY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	147, 218
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	2 cut(s)	48, 80
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	226
SspI	AATATT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	68
TasI	AATT	1 cut(s)	226
XceI	RCATGY	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.